Wall clock time and date at job start Tue Mar 31 2020 17:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47062 * 2 1 4 4 C 1.52991 * 109.47164 * 239.99844 * 2 1 3 5 5 N 1.46506 * 109.47335 * 64.99922 * 4 2 1 6 6 C 1.36931 * 120.00267 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99891 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00082 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00115 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00096 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47065 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47208 * 120.00270 * 10 8 6 13 13 H 1.48503 * 109.46742 * 239.99995 * 10 8 6 14 14 C 1.52997 * 109.46682 * 119.99852 * 2 1 3 15 15 N 1.46499 * 109.47551 * 295.00110 * 14 2 1 16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 2 17 17 O 1.21533 * 119.99911 * 359.97438 * 16 15 14 18 18 C 1.48020 * 119.99964 * 180.27114 * 16 15 14 19 19 N 1.32801 * 119.72409 * 359.44974 * 18 16 15 20 20 C 1.31431 * 121.66790 * 179.74471 * 19 18 16 21 21 C 1.38800 * 120.91838 * 0.53645 * 20 19 18 22 22 Cl 1.73605 * 120.32795 * 179.76211 * 21 20 19 23 23 C 1.38656 * 119.34749 * 359.72895 * 21 20 19 24 24 C 1.38741 * 118.46790 * 0.02562 * 23 21 20 25 25 Cl 1.73601 * 120.47943 * 179.97438 * 24 23 21 26 26 H 1.09008 * 109.46787 * 59.99676 * 1 2 3 27 27 H 1.08992 * 109.47470 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47004 * 300.00550 * 1 2 3 29 29 H 1.08999 * 109.47199 * 185.00246 * 4 2 1 30 30 H 1.09006 * 109.47165 * 305.00671 * 4 2 1 31 31 H 0.97006 * 119.99248 * 0.02562 * 5 4 2 32 32 H 0.97003 * 120.00355 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.47059 * 174.99871 * 14 2 1 34 34 H 1.08997 * 109.47280 * 54.99942 * 14 2 1 35 35 H 0.97001 * 120.00074 * 359.97438 * 15 14 2 36 36 H 1.07996 * 119.53865 * 180.24309 * 20 19 18 37 37 H 1.07999 * 120.76795 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 1.6525 0.0353 -2.4424 6 6 2.0020 -0.4203 -3.6855 7 1 2.5630 -1.3376 -3.7863 8 6 1.6352 0.2968 -4.8160 9 7 0.9519 1.4150 -4.6931 10 14 2.1114 -0.3251 -6.5118 11 1 2.8713 -1.5939 -6.3784 12 1 0.8848 -0.5642 -7.3138 13 1 2.9573 0.6889 -7.1913 14 6 2.0400 -0.7212 1.2493 15 7 1.6524 0.0353 2.4424 16 6 1.9963 -0.4131 3.6660 17 8 2.6276 -1.4454 3.7795 18 6 1.5995 0.3482 4.8718 19 7 0.9141 1.4781 4.7411 20 6 0.5380 2.1818 5.7856 21 6 0.8554 1.7721 7.0732 22 17 0.3561 2.7166 8.4416 23 6 1.5745 0.6008 7.2559 24 6 1.9537 -0.1240 6.1353 25 17 2.8558 -1.5976 6.3035 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1263 -0.7995 -1.2055 30 1 1.6053 -1.7198 -1.2951 31 1 1.1489 0.8594 -2.3517 32 1 0.6959 1.9164 -5.4830 33 1 3.1262 -0.7995 1.2057 34 1 1.6053 -1.7197 1.2952 35 1 1.1488 0.8594 2.3518 36 1 -0.0216 3.0938 5.6396 37 1 1.8335 0.2604 8.2476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732361158.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:46 Heat of formation + Delta-G solvation = 0.415992 kcal Electronic energy + Delta-G solvation = -22480.963379 eV Core-core repulsion = 18731.593861 eV Total energy + Delta-G solvation = -3749.369518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.21503 -39.35420 -37.40350 -37.06300 -36.77443 -34.44336 -33.24440 -32.43287 -31.66404 -29.99010 -26.80859 -25.72145 -24.77243 -24.15574 -22.46617 -20.97977 -20.07559 -18.58287 -17.83716 -17.37095 -16.92835 -15.96294 -15.81890 -15.73460 -15.03464 -14.73432 -14.44529 -14.14781 -13.91869 -13.61496 -13.43111 -13.03416 -12.89040 -12.57793 -12.39324 -12.27479 -12.13832 -12.02682 -11.67004 -11.05336 -10.91570 -10.72429 -10.69943 -10.55257 -10.37744 -10.28445 -10.01519 -9.77769 -9.64904 -9.54387 -9.04284 -8.87232 -6.91113 -5.76143 -3.04411 -0.23421 0.26236 1.12504 1.62484 2.25007 2.81670 3.18953 3.44297 3.50150 3.52296 3.56661 3.89421 4.05907 4.26335 4.36872 4.60210 4.92450 5.03215 5.09581 5.22236 5.40681 5.48211 5.58746 5.81910 5.96372 5.97495 6.11209 6.25628 6.38733 6.43954 6.67053 6.78602 6.84421 6.88146 7.40581 7.71990 8.00289 8.42984 9.54351 10.11814 10.46571 11.46930 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.002091 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.335886 B =13390.667424 C =14464.609641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.125 3.875 15 N -0.700 5.700 16 C 0.560 3.440 17 O -0.511 6.511 18 C 0.096 3.904 19 N -0.426 5.426 20 C 0.118 3.882 21 C -0.062 4.062 22 Cl -0.034 7.034 23 C -0.068 4.068 24 C -0.030 4.030 25 Cl 0.001 6.999 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.411 0.589 36 H 0.181 0.819 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 1.580 30.225 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.352 5.352 16 C 0.343 3.657 17 O -0.385 6.385 18 C -0.043 4.043 19 N -0.137 5.137 20 C -0.043 4.043 21 C -0.092 4.092 22 Cl -0.005 7.005 23 C -0.095 4.095 24 C -0.061 4.061 25 Cl 0.031 6.969 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.247 0.753 36 H 0.198 0.802 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.024 0.909 29.404 29.436 hybrid contribution 0.002 0.213 0.087 0.231 sum -1.022 1.123 29.491 29.530 Atomic orbital electron populations 1.21800 0.94580 1.01948 1.01637 1.21556 0.96826 1.00584 0.94005 0.90400 1.20574 0.96621 0.94209 0.85347 1.42348 1.66924 1.27687 1.00582 1.19283 1.28520 1.05398 0.83644 0.91092 1.24739 1.01084 0.97435 0.97868 1.69665 1.43676 1.16599 1.28358 0.86109 0.77577 0.77828 0.84645 1.20547 1.21895 1.21904 1.21524 1.00413 0.95314 0.82537 1.45917 1.56115 1.27963 1.05156 1.17580 0.80762 0.84756 0.82613 1.90907 1.39002 1.22773 1.85851 1.21360 0.96811 0.92859 0.93277 1.67902 1.08656 1.04267 1.32888 1.23009 0.96487 0.99378 0.85413 1.22280 1.00953 0.94903 0.91051 1.98425 1.89434 1.70795 1.41864 1.21513 0.95727 0.92483 0.99751 1.21931 0.98124 0.92508 0.93533 1.98463 1.70990 1.29882 1.97605 0.91107 0.92822 0.93753 0.96088 0.95949 0.78185 0.93590 0.90916 0.90909 0.75298 0.80207 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.94 37.16 0.33 -1.78 16 2 C -0.11 -1.69 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.16 3.16 5.65 -4.04 -0.02 3.14 16 5 N -0.73 -18.25 5.33 -59.91 -0.32 -18.57 16 6 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 7 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 10 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C 0.13 1.70 5.06 -4.04 -0.02 1.68 16 15 N -0.70 -8.59 5.27 -61.20 -0.32 -8.92 16 16 C 0.56 7.29 7.80 -12.25 -0.10 7.19 16 17 O -0.51 -7.79 13.94 5.34 0.07 -7.72 16 18 C 0.10 1.05 6.75 -82.98 -0.56 0.49 16 19 N -0.43 -4.03 9.54 -9.75 -0.09 -4.12 16 20 C 0.12 0.82 10.98 -17.52 -0.19 0.63 16 21 C -0.06 -0.40 6.35 -39.22 -0.25 -0.65 16 22 Cl -0.03 -0.19 28.99 -51.86 -1.50 -1.69 16 23 C -0.07 -0.47 9.78 -39.24 -0.38 -0.86 16 24 C -0.03 -0.29 6.37 -38.94 -0.25 -0.54 16 25 Cl 0.00 0.01 26.03 -51.86 -1.35 -1.34 16 26 H 0.07 1.23 7.18 -51.92 -0.37 0.85 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.55 7.18 -51.93 -0.37 0.18 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.38 9.99 6.85 -40.82 -0.28 9.71 16 32 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.41 4.56 6.98 -40.82 -0.28 4.27 16 36 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -31.73 347.97 -8.72 -40.44 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.24 Total: 6.58 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.91 Total: 0.05 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.01 Total: -59.02 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.07 Total: -7.72 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -2.85 Total: -3.03 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.73 -8.72 -40.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732361158.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.860 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds