Wall clock time and date at job start Tue Mar 31 2020 17:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47062 * 2 1 4 4 C 1.52991 * 109.47164 * 239.99844 * 2 1 3 5 5 N 1.46506 * 109.47335 * 64.99922 * 4 2 1 6 6 C 1.36931 * 120.00267 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99891 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00082 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00115 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00096 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47065 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47208 * 120.00270 * 10 8 6 13 13 H 1.48503 * 109.46742 * 239.99995 * 10 8 6 14 14 C 1.52997 * 109.46682 * 119.99852 * 2 1 3 15 15 N 1.46499 * 109.47551 * 295.00110 * 14 2 1 16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 2 17 17 O 1.21533 * 119.99911 * 359.97438 * 16 15 14 18 18 C 1.48020 * 119.99964 * 180.27114 * 16 15 14 19 19 N 1.32801 * 119.72409 * 359.44974 * 18 16 15 20 20 C 1.31431 * 121.66790 * 179.74471 * 19 18 16 21 21 C 1.38800 * 120.91838 * 0.53645 * 20 19 18 22 22 Cl 1.73605 * 120.32795 * 179.76211 * 21 20 19 23 23 C 1.38656 * 119.34749 * 359.72895 * 21 20 19 24 24 C 1.38741 * 118.46790 * 0.02562 * 23 21 20 25 25 Cl 1.73601 * 120.47943 * 179.97438 * 24 23 21 26 26 H 1.09008 * 109.46787 * 59.99676 * 1 2 3 27 27 H 1.08992 * 109.47470 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47004 * 300.00550 * 1 2 3 29 29 H 1.08999 * 109.47199 * 185.00246 * 4 2 1 30 30 H 1.09006 * 109.47165 * 305.00671 * 4 2 1 31 31 H 0.97006 * 119.99248 * 0.02562 * 5 4 2 32 32 H 0.97003 * 120.00355 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.47059 * 174.99871 * 14 2 1 34 34 H 1.08997 * 109.47280 * 54.99942 * 14 2 1 35 35 H 0.97001 * 120.00074 * 359.97438 * 15 14 2 36 36 H 1.07996 * 119.53865 * 180.24309 * 20 19 18 37 37 H 1.07999 * 120.76795 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 1.6525 0.0353 -2.4424 6 6 2.0020 -0.4203 -3.6855 7 1 2.5630 -1.3376 -3.7863 8 6 1.6352 0.2968 -4.8160 9 7 0.9519 1.4150 -4.6931 10 14 2.1114 -0.3251 -6.5118 11 1 2.8713 -1.5939 -6.3784 12 1 0.8848 -0.5642 -7.3138 13 1 2.9573 0.6889 -7.1913 14 6 2.0400 -0.7212 1.2493 15 7 1.6524 0.0353 2.4424 16 6 1.9963 -0.4131 3.6660 17 8 2.6276 -1.4454 3.7795 18 6 1.5995 0.3482 4.8718 19 7 0.9141 1.4781 4.7411 20 6 0.5380 2.1818 5.7856 21 6 0.8554 1.7721 7.0732 22 17 0.3561 2.7166 8.4416 23 6 1.5745 0.6008 7.2559 24 6 1.9537 -0.1240 6.1353 25 17 2.8558 -1.5976 6.3035 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1263 -0.7995 -1.2055 30 1 1.6053 -1.7198 -1.2951 31 1 1.1489 0.8594 -2.3517 32 1 0.6959 1.9164 -5.4830 33 1 3.1262 -0.7995 1.2057 34 1 1.6053 -1.7197 1.2952 35 1 1.1488 0.8594 2.3518 36 1 -0.0216 3.0938 5.6396 37 1 1.8335 0.2604 8.2476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732361158.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:46 Heat of formation + Delta-G solvation = -20.439498 kcal Electronic energy + Delta-G solvation = -22481.867741 eV Core-core repulsion = 18731.593861 eV Total energy + Delta-G solvation = -3750.273880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.93973 -40.29282 -38.27599 -37.87735 -37.71064 -35.98929 -34.30736 -33.60026 -32.49785 -31.72009 -27.92729 -27.30148 -25.75160 -24.96838 -24.10632 -21.95170 -21.39219 -19.63112 -18.93474 -18.50821 -17.93947 -17.07939 -16.80933 -16.55547 -16.31960 -16.01514 -15.51550 -15.42986 -15.16794 -14.90296 -14.50434 -14.16294 -14.04356 -13.66815 -13.56682 -13.39062 -13.03671 -12.95035 -12.82457 -12.72924 -12.38668 -12.17462 -12.11558 -11.98583 -11.67747 -11.64124 -11.39814 -10.94165 -10.88181 -10.64894 -10.29969 -10.00062 -8.97801 -7.94309 -5.22370 -0.91806 -0.32558 0.54923 0.97010 1.45066 1.48633 1.48947 1.59241 1.89383 2.40589 2.57204 2.86660 3.31641 3.39560 3.42413 3.59136 3.72185 3.77195 3.97667 4.09141 4.27275 4.37002 4.54436 4.56086 4.72007 4.76978 4.92288 4.95552 5.06042 5.14638 5.29076 5.39311 5.48249 5.51827 6.15184 6.28639 6.47994 7.03491 7.35313 8.10836 8.34814 9.29429 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.002091 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.335886 B =13390.667424 C =14464.609641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.077 0.923 4 C 0.157 3.843 5 N -0.742 5.742 6 C -0.244 4.244 7 H 0.074 0.926 8 C -0.076 4.076 9 N -0.968 5.968 10 Si 0.972 3.028 11 H -0.267 1.267 12 H -0.293 1.293 13 H -0.293 1.293 14 C 0.138 3.862 15 N -0.695 5.695 16 C 0.558 3.442 17 O -0.539 6.539 18 C 0.076 3.924 19 N -0.437 5.437 20 C 0.121 3.879 21 C -0.053 4.053 22 Cl -0.017 7.017 23 C -0.060 4.060 24 C -0.038 4.038 25 Cl -0.014 7.014 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.022 0.978 30 H 0.024 0.976 31 H 0.376 0.624 32 H 0.251 0.749 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.417 0.583 36 H 0.209 0.791 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 2.013 31.906 32.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.095 0.905 4 C 0.030 3.970 5 N -0.385 5.385 6 C -0.375 4.375 7 H 0.092 0.908 8 C -0.268 4.268 9 N -0.619 5.619 10 Si 0.802 3.198 11 H -0.192 1.192 12 H -0.220 1.220 13 H -0.220 1.220 14 C 0.014 3.986 15 N -0.347 5.347 16 C 0.342 3.658 17 O -0.416 6.416 18 C -0.062 4.062 19 N -0.149 5.149 20 C -0.040 4.040 21 C -0.082 4.082 22 Cl 0.012 6.988 23 C -0.087 4.087 24 C -0.069 4.069 25 Cl 0.015 6.985 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.209 0.791 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.255 0.745 36 H 0.226 0.774 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.304 1.325 31.115 31.170 hybrid contribution 0.058 0.142 -0.278 0.318 sum -1.247 1.467 30.836 30.896 Atomic orbital electron populations 1.21722 0.93974 1.01963 1.01607 1.21331 0.97122 1.00071 0.92836 0.90474 1.20726 0.96638 0.94156 0.85467 1.42526 1.66787 1.27823 1.01370 1.19667 1.27625 1.05237 0.85019 0.90760 1.25546 1.01814 0.97949 1.01517 1.69810 1.45219 1.17879 1.29011 0.85083 0.77074 0.77606 0.80062 1.19189 1.22002 1.22038 1.21253 1.00027 0.95090 0.82253 1.45790 1.56142 1.28032 1.04696 1.17913 0.80098 0.84551 0.83216 1.90886 1.40269 1.24069 1.86355 1.21034 0.98697 0.93814 0.92631 1.67874 1.08929 1.04031 1.34039 1.23499 0.95753 0.99675 0.85073 1.22327 0.99875 0.94542 0.91500 1.98443 1.89125 1.70254 1.40975 1.21747 0.94834 0.92097 0.99988 1.21995 0.98561 0.92382 0.93942 1.98454 1.71477 1.30936 1.97608 0.93817 0.92784 0.90991 0.96036 0.95847 0.79110 0.93990 0.91340 0.90999 0.74514 0.77434 0.79686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 8.94 71.98 0.64 -3.28 16 2 C -0.09 -2.85 2.46 -10.80 -0.03 -2.88 16 3 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.16 6.17 5.65 86.38 0.49 6.66 16 5 N -0.74 -37.39 5.33 -343.45 -1.83 -39.22 16 6 C -0.24 -13.66 9.99 84.03 0.84 -12.83 16 7 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 8 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 9 N -0.97 -59.09 13.06 21.65 0.28 -58.80 16 10 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 13 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 14 C 0.14 3.64 5.06 86.38 0.44 4.08 16 15 N -0.69 -16.48 5.27 -465.82 -2.46 -18.93 16 16 C 0.56 14.27 7.80 86.84 0.68 14.95 16 17 O -0.54 -16.49 13.94 -3.82 -0.05 -16.54 16 18 C 0.08 1.58 6.75 41.89 0.28 1.87 16 19 N -0.44 -7.52 9.54 -184.76 -1.76 -9.28 16 20 C 0.12 1.38 10.98 84.89 0.93 2.31 16 21 C -0.05 -0.54 6.35 22.50 0.14 -0.40 16 22 Cl -0.02 -0.14 28.99 -2.72 -0.08 -0.21 16 23 C -0.06 -0.71 9.78 22.49 0.22 -0.49 16 24 C -0.04 -0.69 6.37 22.68 0.14 -0.54 16 25 Cl -0.01 -0.29 26.03 -2.72 -0.07 -0.36 16 26 H 0.04 1.51 7.18 -2.38 -0.02 1.50 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.67 7.18 -2.39 -0.02 1.66 16 29 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.38 19.93 6.85 -92.70 -0.64 19.30 16 32 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.42 8.73 6.98 -92.71 -0.65 8.08 16 36 H 0.21 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -68.11 347.97 1.15 -66.95 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -0.15 Total: 22.48 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.25 Total: 5.54 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -5.77 Total: -126.24 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.05 Total: -16.54 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.15 Total: -0.58 kcal Total: -68.11 1.15 -66.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732361158.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.514 kcal (2) G-P(sol) polarization free energy of solvation -68.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds