Wall clock time and date at job start Tue Mar 31 2020 17:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47362 * 2 1 4 4 C 1.53003 * 109.47152 * 119.99533 * 2 1 3 5 5 N 1.46501 * 109.47616 * 175.00232 * 4 2 1 6 6 C 1.46496 * 119.99795 * 269.72846 * 5 4 2 7 7 C 1.34772 * 119.99859 * 89.99942 * 5 4 2 8 8 O 1.21539 * 120.00049 * 357.22073 * 7 5 4 9 9 C 1.48020 * 120.00063 * 177.22254 * 7 5 4 10 10 N 1.32798 * 119.72024 * 5.95773 * 9 7 5 11 11 C 1.31435 * 121.66722 * 179.71268 * 10 9 7 12 12 C 1.38807 * 120.91638 * 0.56417 * 11 10 9 13 13 Cl 1.73601 * 120.32806 * 179.74295 * 12 11 10 14 14 C 1.38666 * 119.34583 * 359.72771 * 12 11 10 15 15 C 1.38734 * 118.46574 * 359.97438 * 14 12 11 16 16 Cl 1.73600 * 120.47858 * 179.97438 * 15 14 12 17 17 N 1.46497 * 109.47754 * 239.99496 * 2 1 3 18 18 C 1.36942 * 119.99403 * 84.99831 * 17 2 1 19 19 H 1.07996 * 120.00180 * 0.02562 * 18 17 2 20 20 C 1.38817 * 119.99358 * 180.02562 * 18 17 2 21 21 N 1.31618 * 120.00452 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99642 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47174 * 90.00155 * 22 20 18 24 24 H 1.48497 * 109.47213 * 210.00250 * 22 20 18 25 25 H 1.48501 * 109.47173 * 330.00313 * 22 20 18 26 26 H 1.08991 * 109.47891 * 300.00258 * 1 2 3 27 27 H 1.08998 * 109.46909 * 60.00767 * 1 2 3 28 28 H 1.09001 * 109.46856 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46705 * 55.00143 * 4 2 1 30 30 H 1.08999 * 109.47486 * 295.00513 * 4 2 1 31 31 H 1.09007 * 109.47115 * 96.10517 * 6 5 4 32 32 H 1.09001 * 109.46899 * 216.10010 * 6 5 4 33 33 H 1.08994 * 109.47298 * 336.10452 * 6 5 4 34 34 H 1.08000 * 119.54386 * 180.29103 * 11 10 9 35 35 H 1.07994 * 120.76461 * 180.02562 * 14 12 11 36 36 H 0.96996 * 120.00165 * 265.00618 * 17 2 1 37 37 H 0.96999 * 119.99819 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1908 6 6 4.1258 -1.9947 0.5669 7 6 4.2674 0.1493 1.7158 8 8 3.7492 1.1399 2.1925 9 6 5.7415 0.0144 1.7118 10 7 6.3070 -1.0110 1.0854 11 6 7.6119 -1.1650 1.0529 12 6 8.4528 -0.2608 1.6869 13 17 10.1740 -0.4827 1.6399 14 6 7.9046 0.8218 2.3580 15 6 6.5244 0.9621 2.3703 16 17 5.7825 2.2974 3.1950 17 7 2.0184 -0.6907 -1.1960 18 6 2.1492 -0.0075 -2.3757 19 1 1.8927 1.0404 -2.4241 20 6 2.6116 -0.6621 -3.5091 21 7 2.9238 -1.9394 -3.4502 22 14 2.7907 0.2699 -5.1181 23 1 4.1533 0.8540 -5.2027 24 1 2.5797 -0.6611 -6.2556 25 1 1.7814 1.3577 -5.1750 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6053 -1.7198 1.2952 30 1 1.7516 -0.1583 2.1370 31 1 4.3783 -1.7626 -0.4678 32 1 5.0327 -2.2558 1.1123 33 1 3.4321 -2.8351 0.5918 34 1 8.0356 -2.0093 0.5293 35 1 8.5374 1.5394 2.8587 36 1 2.2491 -1.6318 -1.1524 37 1 3.2465 -2.3968 -4.2424 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734349881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:36 Heat of formation + Delta-G solvation = 31.730828 kcal Electronic energy + Delta-G solvation = -24100.142061 eV Core-core repulsion = 20352.130456 eV Total energy + Delta-G solvation = -3748.011605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95844 -39.01986 -37.09226 -36.76362 -36.21110 -34.29360 -32.79753 -31.98690 -31.24654 -28.76668 -26.74731 -26.15218 -24.34432 -23.91868 -23.32143 -20.61213 -19.56213 -17.59004 -17.51193 -17.23215 -16.78182 -15.75949 -15.49662 -15.33208 -14.67706 -14.28893 -14.18657 -13.89228 -13.60417 -13.24687 -12.95748 -12.60297 -12.37076 -12.24906 -12.14004 -12.00761 -11.88946 -11.58234 -11.35488 -11.32826 -11.14269 -10.82766 -10.66881 -10.32568 -10.04981 -9.96126 -9.90650 -9.61219 -9.16713 -9.12511 -8.89055 -8.04919 -6.89615 -5.73501 -2.99935 0.14532 0.60818 1.43278 1.94848 2.66051 3.17808 3.45008 3.50950 3.51952 3.58359 3.96443 4.23171 4.35235 4.57425 4.62858 4.69323 5.20942 5.36986 5.50656 5.59505 5.70874 5.76688 5.79846 5.93640 6.13265 6.28935 6.37569 6.41139 6.64955 6.77504 6.89896 6.91500 7.17282 7.27863 7.72474 7.76299 8.40966 8.45837 9.57298 10.13947 10.50234 11.49266 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011263 B = 0.004226 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.361304 B = 6623.796079 C = 7956.757720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.052 0.948 4 C 0.110 3.890 5 N -0.568 5.568 6 C 0.073 3.927 7 C 0.558 3.442 8 O -0.522 6.522 9 C 0.105 3.895 10 N -0.409 5.409 11 C 0.111 3.889 12 C -0.065 4.065 13 Cl -0.042 7.042 14 C -0.070 4.070 15 C -0.032 4.032 16 Cl -0.005 7.005 17 N -0.719 5.719 18 C -0.230 4.230 19 H 0.067 0.933 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.902 3.098 23 H -0.292 1.292 24 H -0.292 1.292 25 H -0.283 1.283 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.179 0.821 35 H 0.160 0.840 36 H 0.383 0.617 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.514 0.681 14.967 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.070 0.930 4 C -0.014 4.014 5 N -0.297 5.297 6 C -0.070 4.070 7 C 0.343 3.657 8 O -0.399 6.399 9 C -0.034 4.034 10 N -0.120 5.120 11 C -0.049 4.049 12 C -0.095 4.095 13 Cl -0.013 7.013 14 C -0.096 4.096 15 C -0.062 4.062 16 Cl 0.025 6.975 17 N -0.361 5.361 18 C -0.361 4.361 19 H 0.085 0.915 20 C -0.208 4.208 21 N -0.583 5.583 22 Si 0.733 3.267 23 H -0.220 1.220 24 H -0.219 1.219 25 H -0.209 1.209 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.196 0.804 35 H 0.177 0.823 36 H 0.217 0.783 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.731 0.815 14.729 18.242 hybrid contribution 0.930 0.774 -0.756 1.427 sum 11.661 1.589 13.973 18.268 Atomic orbital electron populations 1.22366 0.98784 1.00818 1.00265 1.20637 0.91960 0.96303 0.86684 0.92992 1.21979 0.78275 1.01449 0.99648 1.47502 1.06606 1.20876 1.54716 1.22527 0.98175 0.85815 1.00447 1.17530 0.84295 0.83809 0.80037 1.90850 1.72986 1.28855 1.47189 1.21456 0.96139 0.90762 0.95034 1.68667 1.10938 1.18070 1.14369 1.23235 0.88226 0.98168 0.95229 1.22276 0.87125 0.98062 1.01991 1.98406 1.09093 1.96620 1.97182 1.21441 0.93026 0.97219 0.97963 1.21875 0.92580 0.93155 0.98634 1.98441 1.81843 1.42007 1.75229 1.42383 1.78092 1.10498 1.05158 1.19220 1.35847 0.93754 0.87292 0.91493 1.24645 1.02483 0.95948 0.97759 1.69637 1.51450 1.08465 1.28702 0.86264 0.77725 0.78664 0.84017 1.21965 1.21858 1.20892 0.94310 0.92578 0.93483 0.90673 0.90063 0.90055 0.88677 0.92450 0.80402 0.82275 0.78298 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.49 37.16 0.35 -2.60 16 2 C 0.15 3.16 3.20 -67.93 -0.22 2.95 16 3 H 0.05 1.18 8.08 -51.93 -0.42 0.76 16 4 C 0.11 1.88 5.05 -4.04 -0.02 1.86 16 5 N -0.57 -9.98 2.73 -182.62 -0.50 -10.47 16 6 C 0.07 1.21 7.98 59.84 0.48 1.69 16 7 C 0.56 10.00 7.64 -12.25 -0.09 9.91 16 8 O -0.52 -10.11 13.59 5.33 0.07 -10.04 16 9 C 0.11 1.62 6.64 -82.98 -0.55 1.07 16 10 N -0.41 -5.77 5.99 -9.75 -0.06 -5.82 16 11 C 0.11 1.23 10.98 -17.51 -0.19 1.04 16 12 C -0.06 -0.65 6.35 -39.21 -0.25 -0.90 16 13 Cl -0.04 -0.35 28.99 -51.86 -1.50 -1.86 16 14 C -0.07 -0.72 9.78 -39.24 -0.38 -1.11 16 15 C -0.03 -0.43 6.37 -38.94 -0.25 -0.67 16 16 Cl 0.00 -0.06 26.05 -51.86 -1.35 -1.41 16 17 N -0.72 -17.55 4.49 -53.43 -0.24 -17.79 16 18 C -0.23 -6.35 9.93 -15.05 -0.15 -6.50 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 22 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.17 7.85 -51.92 -0.41 0.76 16 30 H 0.08 1.32 7.46 -51.93 -0.39 0.93 16 31 H 0.08 1.67 7.78 -51.92 -0.40 1.26 16 32 H 0.10 1.40 5.15 -53.62 -0.28 1.12 16 33 H 0.06 0.89 7.82 -51.93 -0.41 0.48 16 34 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.38 9.64 6.41 -40.82 -0.26 9.38 16 37 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -30.92 341.89 -8.32 -39.23 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.22 Total: 5.74 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.37 Total: 6.27 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.07 Total: -60.62 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -2.85 Total: -3.27 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.92 -8.32 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734349881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.965 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds