Wall clock time and date at job start Tue Mar 31 2020 17:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47362 * 2 1 4 4 C 1.53003 * 109.47152 * 119.99533 * 2 1 3 5 5 N 1.46501 * 109.47616 * 175.00232 * 4 2 1 6 6 C 1.46496 * 119.99795 * 269.72846 * 5 4 2 7 7 C 1.34772 * 119.99859 * 89.99942 * 5 4 2 8 8 O 1.21539 * 120.00049 * 357.22073 * 7 5 4 9 9 C 1.48020 * 120.00063 * 177.22254 * 7 5 4 10 10 N 1.32798 * 119.72024 * 5.95773 * 9 7 5 11 11 C 1.31435 * 121.66722 * 179.71268 * 10 9 7 12 12 C 1.38807 * 120.91638 * 0.56417 * 11 10 9 13 13 Cl 1.73601 * 120.32806 * 179.74295 * 12 11 10 14 14 C 1.38666 * 119.34583 * 359.72771 * 12 11 10 15 15 C 1.38734 * 118.46574 * 359.97438 * 14 12 11 16 16 Cl 1.73600 * 120.47858 * 179.97438 * 15 14 12 17 17 N 1.46497 * 109.47754 * 239.99496 * 2 1 3 18 18 C 1.36942 * 119.99403 * 84.99831 * 17 2 1 19 19 H 1.07996 * 120.00180 * 0.02562 * 18 17 2 20 20 C 1.38817 * 119.99358 * 180.02562 * 18 17 2 21 21 N 1.31618 * 120.00452 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99642 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47174 * 90.00155 * 22 20 18 24 24 H 1.48497 * 109.47213 * 210.00250 * 22 20 18 25 25 H 1.48501 * 109.47173 * 330.00313 * 22 20 18 26 26 H 1.08991 * 109.47891 * 300.00258 * 1 2 3 27 27 H 1.08998 * 109.46909 * 60.00767 * 1 2 3 28 28 H 1.09001 * 109.46856 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46705 * 55.00143 * 4 2 1 30 30 H 1.08999 * 109.47486 * 295.00513 * 4 2 1 31 31 H 1.09007 * 109.47115 * 96.10517 * 6 5 4 32 32 H 1.09001 * 109.46899 * 216.10010 * 6 5 4 33 33 H 1.08994 * 109.47298 * 336.10452 * 6 5 4 34 34 H 1.08000 * 119.54386 * 180.29103 * 11 10 9 35 35 H 1.07994 * 120.76461 * 180.02562 * 14 12 11 36 36 H 0.96996 * 120.00165 * 265.00618 * 17 2 1 37 37 H 0.96999 * 119.99819 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1908 6 6 4.1258 -1.9947 0.5669 7 6 4.2674 0.1493 1.7158 8 8 3.7492 1.1399 2.1925 9 6 5.7415 0.0144 1.7118 10 7 6.3070 -1.0110 1.0854 11 6 7.6119 -1.1650 1.0529 12 6 8.4528 -0.2608 1.6869 13 17 10.1740 -0.4827 1.6399 14 6 7.9046 0.8218 2.3580 15 6 6.5244 0.9621 2.3703 16 17 5.7825 2.2974 3.1950 17 7 2.0184 -0.6907 -1.1960 18 6 2.1492 -0.0075 -2.3757 19 1 1.8927 1.0404 -2.4241 20 6 2.6116 -0.6621 -3.5091 21 7 2.9238 -1.9394 -3.4502 22 14 2.7907 0.2699 -5.1181 23 1 4.1533 0.8540 -5.2027 24 1 2.5797 -0.6611 -6.2556 25 1 1.7814 1.3577 -5.1750 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6053 -1.7198 1.2952 30 1 1.7516 -0.1583 2.1370 31 1 4.3783 -1.7626 -0.4678 32 1 5.0327 -2.2558 1.1123 33 1 3.4321 -2.8351 0.5918 34 1 8.0356 -2.0093 0.5293 35 1 8.5374 1.5394 2.8587 36 1 2.2491 -1.6318 -1.1524 37 1 3.2465 -2.3968 -4.2424 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734349881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:35 Heat of formation + Delta-G solvation = 13.597894 kcal Electronic energy + Delta-G solvation = -24100.928364 eV Core-core repulsion = 20352.130456 eV Total energy + Delta-G solvation = -3748.797908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03011 -40.28258 -38.05627 -37.79685 -37.63764 -35.85660 -34.14600 -33.50525 -32.33320 -30.63570 -28.14902 -27.43463 -25.86003 -25.18701 -24.67039 -22.06570 -20.98530 -19.26082 -18.72434 -18.52063 -17.85940 -17.05549 -16.94375 -16.45773 -16.31277 -15.67244 -15.59987 -15.14290 -15.00764 -14.74670 -14.11601 -13.96839 -13.73908 -13.58202 -13.39495 -13.35179 -13.11995 -12.93451 -12.80662 -12.74490 -12.47994 -12.38238 -12.30729 -12.17728 -11.85038 -11.62857 -11.11822 -10.95229 -10.85593 -10.28898 -10.14929 -9.49245 -8.90486 -7.89708 -5.14853 -0.86486 -0.29595 0.55906 0.99097 1.45279 1.45884 1.51261 1.53809 1.94845 2.43156 2.57392 2.91013 3.31248 3.42202 3.44005 3.56323 3.78890 3.91628 4.14935 4.25613 4.36521 4.52006 4.55692 4.67864 4.72608 4.82646 4.86682 5.08030 5.12194 5.28248 5.35622 5.47118 5.54272 5.70197 6.25253 6.32908 6.41441 7.06411 7.40393 8.14553 8.42626 9.32766 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011263 B = 0.004226 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.361304 B = 6623.796079 C = 7956.757720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.153 3.847 3 H 0.022 0.978 4 C 0.115 3.885 5 N -0.575 5.575 6 C 0.086 3.914 7 C 0.550 3.450 8 O -0.545 6.545 9 C 0.077 3.923 10 N -0.429 5.429 11 C 0.112 3.888 12 C -0.052 4.052 13 Cl -0.017 7.017 14 C -0.059 4.059 15 C -0.038 4.038 16 Cl -0.013 7.013 17 N -0.724 5.724 18 C -0.234 4.234 19 H 0.059 0.941 20 C -0.063 4.063 21 N -0.957 5.957 22 Si 0.957 3.043 23 H -0.293 1.293 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.205 0.795 35 H 0.189 0.811 36 H 0.378 0.622 37 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.907 0.526 15.745 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.040 0.960 4 C -0.008 4.008 5 N -0.304 5.304 6 C -0.056 4.056 7 C 0.337 3.663 8 O -0.423 6.423 9 C -0.061 4.061 10 N -0.141 5.141 11 C -0.048 4.048 12 C -0.082 4.082 13 Cl 0.012 6.988 14 C -0.085 4.085 15 C -0.068 4.068 16 Cl 0.016 6.984 17 N -0.366 5.366 18 C -0.366 4.366 19 H 0.077 0.923 20 C -0.256 4.256 21 N -0.608 5.608 22 Si 0.788 3.212 23 H -0.221 1.221 24 H -0.218 1.218 25 H -0.203 1.203 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.222 0.778 35 H 0.206 0.794 36 H 0.212 0.788 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.108 0.678 15.534 19.708 hybrid contribution 0.639 0.846 -0.949 1.423 sum 12.747 1.524 14.585 19.430 Atomic orbital electron populations 1.22202 0.96695 1.01506 1.00742 1.20769 0.93350 0.94754 0.86791 0.95954 1.21927 0.78499 1.02283 0.98110 1.47614 1.06759 1.21200 1.54797 1.22394 0.99372 0.85626 0.98203 1.18004 0.85646 0.83334 0.79367 1.90815 1.73890 1.29513 1.48118 1.21149 0.94961 0.92575 0.97383 1.68491 1.12637 1.18213 1.14765 1.23673 0.87314 0.98960 0.94902 1.22303 0.88255 0.97162 1.00497 1.98426 1.06984 1.96461 1.96954 1.21726 0.91967 0.97584 0.97245 1.21945 0.93560 0.92628 0.98706 1.98433 1.82271 1.42331 1.75379 1.42436 1.78370 1.10254 1.05505 1.19420 1.34981 0.93575 0.88647 0.92332 1.25265 1.03120 0.96815 1.00391 1.69756 1.52512 1.09453 1.29065 0.85380 0.77455 0.77652 0.80724 1.22074 1.21832 1.20298 0.91255 0.94642 0.92629 0.88617 0.88894 0.94212 0.86602 0.91582 0.77832 0.79416 0.78831 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 9.49 71.98 0.68 -4.71 16 2 C 0.15 6.29 3.20 44.99 0.14 6.43 16 3 H 0.02 1.05 8.08 -2.39 -0.02 1.03 16 4 C 0.11 3.88 5.05 86.38 0.44 4.32 16 5 N -0.57 -20.31 2.73 -849.98 -2.32 -22.63 16 6 C 0.09 2.90 7.98 127.77 1.02 3.92 16 7 C 0.55 19.94 7.64 86.84 0.66 20.60 16 8 O -0.55 -21.43 13.59 -3.84 -0.05 -21.48 16 9 C 0.08 2.36 6.64 41.89 0.28 2.64 16 10 N -0.43 -11.82 5.99 -184.75 -1.11 -12.93 16 11 C 0.11 2.26 10.98 84.89 0.93 3.19 16 12 C -0.05 -0.92 6.35 22.51 0.14 -0.78 16 13 Cl -0.02 -0.24 28.99 -2.72 -0.08 -0.32 16 14 C -0.06 -1.09 9.78 22.49 0.22 -0.87 16 15 C -0.04 -0.97 6.37 22.68 0.14 -0.83 16 16 Cl -0.01 -0.36 26.05 -2.72 -0.07 -0.44 16 17 N -0.72 -35.92 4.49 -322.94 -1.45 -37.37 16 18 C -0.23 -13.16 9.93 84.03 0.83 -12.33 16 19 H 0.06 3.33 7.83 -2.91 -0.02 3.30 16 20 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 21 N -0.96 -56.57 13.06 21.65 0.28 -56.29 16 22 Si 0.96 46.77 29.55 68.60 2.03 48.79 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.10 2.83 7.85 -2.38 -0.02 2.82 16 30 H 0.09 2.94 7.46 -2.39 -0.02 2.92 16 31 H 0.04 1.67 7.78 -2.38 -0.02 1.65 16 32 H 0.12 3.37 5.15 -5.73 -0.03 3.34 16 33 H 0.07 2.04 7.82 -2.39 -0.02 2.02 16 34 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.38 19.37 6.41 -92.71 -0.59 18.77 16 37 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -67.45 341.89 3.70 -63.74 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.51 Total: 20.47 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 5.96 Total: 18.46 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -4.59 Total: -129.22 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.05 Total: -21.48 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.15 Total: -0.75 kcal Total: -67.45 3.70 -63.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734349881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.340 kcal (2) G-P(sol) polarization free energy of solvation -67.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds