Wall clock time and date at job start Tue Mar 31 2020 17:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.46481 * 2 1 4 4 C 1.36932 * 120.00298 * 275.30784 * 3 2 1 5 5 H 1.07998 * 119.99990 * 37.57925 * 4 3 2 6 6 C 1.38814 * 120.00245 * 217.58321 * 4 3 2 7 7 N 1.31612 * 120.00275 * 21.42852 * 6 4 3 8 8 Si 1.86798 * 119.99740 * 201.43467 * 6 4 3 9 9 H 1.48498 * 109.47351 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47423 * 119.99811 * 8 6 4 11 11 H 1.48508 * 109.46858 * 239.99559 * 8 6 4 12 12 C 1.46502 * 119.99779 * 95.31481 * 3 2 1 13 13 C 1.53000 * 109.46869 * 269.99594 * 12 3 2 14 14 N 1.46500 * 109.47484 * 180.02562 * 13 12 3 15 15 C 1.34770 * 120.00327 * 179.97438 * 14 13 12 16 16 O 1.21536 * 120.00381 * 0.02562 * 15 14 13 17 17 C 1.48027 * 120.00073 * 179.97438 * 15 14 13 18 18 N 1.32801 * 119.72021 * 0.02562 * 17 15 14 19 19 C 1.31432 * 121.66670 * 179.97438 * 18 17 15 20 20 C 1.38806 * 120.91646 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 120.32489 * 180.02562 * 20 19 18 22 22 C 1.38659 * 119.34574 * 0.02562 * 20 19 18 23 23 C 1.38729 * 118.47137 * 359.97438 * 22 20 19 24 24 Cl 1.73597 * 120.48099 * 179.97438 * 23 22 20 25 25 H 1.08999 * 109.46997 * 299.99591 * 1 2 3 26 26 H 1.08989 * 109.47343 * 60.00215 * 1 2 3 27 27 H 1.09001 * 109.46595 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47459 * 240.00309 * 2 1 3 29 29 H 1.09003 * 109.47434 * 119.99862 * 2 1 3 30 30 H 0.97000 * 120.00142 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47041 * 149.99987 * 12 3 2 32 32 H 1.08995 * 109.47732 * 29.99360 * 12 3 2 33 33 H 1.08996 * 109.47257 * 60.00117 * 13 12 3 34 34 H 1.09003 * 109.47278 * 300.00058 * 13 12 3 35 35 H 0.97005 * 119.99557 * 359.97438 * 14 13 12 36 36 H 1.07997 * 119.53925 * 180.28360 * 19 18 17 37 37 H 1.08001 * 120.76209 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1430 2.0635 -1.1807 5 1 1.4105 1.9279 -1.9627 6 6 3.2110 2.9291 -1.3728 7 7 4.3025 2.7983 -0.6491 8 14 3.0989 4.2798 -2.6582 9 1 1.7772 4.2137 -3.3319 10 1 3.2546 5.6025 -2.0014 11 1 4.1763 4.0968 -3.6638 12 6 2.3731 2.0328 1.2633 13 6 1.1425 2.7382 1.8366 14 7 1.4973 3.3902 3.0996 15 6 0.5650 4.0777 3.7884 16 8 -0.5704 4.1564 3.3621 17 6 0.9235 4.7360 5.0649 18 7 2.1657 4.6460 5.5259 19 6 2.5258 5.2157 6.6542 20 6 1.6140 5.9385 7.4110 21 17 2.1065 6.6854 8.8988 22 6 0.3058 6.0582 6.9670 23 6 -0.0457 5.4463 5.7726 24 17 -1.6690 5.5620 5.1683 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8899 29 1 1.8935 -0.5138 0.8900 30 1 5.0487 3.4035 -0.7831 31 1 3.1615 2.7643 1.0860 32 1 2.7254 1.2835 1.9722 33 1 0.3541 2.0068 2.0139 34 1 0.7901 3.4876 1.1278 35 1 2.4035 3.3271 3.4401 36 1 3.5466 5.1244 6.9947 37 1 -0.4226 6.6149 7.5379 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753092136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:58 Heat of formation + Delta-G solvation = 15.244049 kcal Electronic energy + Delta-G solvation = -23193.550779 eV Core-core repulsion = 19444.824255 eV Total energy + Delta-G solvation = -3748.726525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95947 -38.90309 -37.20875 -36.82293 -36.29349 -34.18826 -32.90385 -31.88362 -31.57338 -29.58499 -27.61139 -25.14269 -24.30242 -23.88876 -21.91036 -20.65141 -20.25400 -18.37798 -17.61504 -17.09092 -16.55244 -15.61344 -15.49574 -15.25543 -14.99574 -14.43816 -14.29558 -13.81396 -13.74610 -13.55471 -13.12318 -12.84904 -12.48620 -12.38844 -12.18661 -12.03409 -11.94634 -11.54080 -11.41005 -11.12525 -10.78080 -10.65819 -10.48482 -10.45608 -10.10032 -10.06999 -9.86310 -9.79434 -9.41502 -9.31638 -8.58058 -8.45448 -6.62699 -5.83296 -3.42169 -0.00569 0.46679 1.29785 1.83099 2.53337 3.18386 3.35125 3.43884 3.47459 3.49363 3.82161 4.08298 4.30039 4.45657 4.49039 4.62682 5.16315 5.26519 5.29236 5.54641 5.70230 5.99114 6.10202 6.16123 6.38633 6.40595 6.50844 6.68756 6.80032 6.91994 6.99836 7.09922 7.16921 7.54818 7.81032 7.86164 8.41758 8.48826 9.14661 9.76618 10.34638 11.16708 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.002974 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.402205 B = 9414.076768 C = 9973.180206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.261 4.261 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.137 3.863 13 C 0.096 3.904 14 N -0.693 5.693 15 C 0.554 3.446 16 O -0.516 6.516 17 C 0.102 3.898 18 N -0.425 5.425 19 C 0.117 3.883 20 C -0.066 4.066 21 Cl -0.038 7.038 22 C -0.068 4.068 23 C -0.032 4.032 24 Cl 0.000 7.000 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.255 0.745 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.407 0.593 36 H 0.180 0.820 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 5.984 19.483 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.390 4.390 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.029 4.029 14 N -0.344 5.344 15 C 0.336 3.664 16 O -0.391 6.391 17 C -0.038 4.038 18 N -0.136 5.136 19 C -0.043 4.043 20 C -0.095 4.095 21 Cl -0.010 7.010 22 C -0.095 4.095 23 C -0.063 4.063 24 Cl 0.029 6.971 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.243 0.757 36 H 0.197 0.803 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.886 5.659 18.645 20.088 hybrid contribution -0.265 1.420 0.269 1.470 sum -5.151 7.079 18.914 20.842 Atomic orbital electron populations 1.22389 0.99909 0.99081 1.01399 1.20885 0.91761 0.86971 0.98917 1.43619 1.76038 1.08275 1.02063 1.19050 1.04775 1.21259 0.93954 0.92031 1.25187 0.94171 1.01213 0.98107 1.69998 1.03172 1.37195 1.42429 0.86351 0.77776 0.82209 0.81214 1.19964 1.21389 1.21587 1.21055 0.94466 0.97045 0.86443 1.22592 1.01407 0.96634 0.82270 1.46021 1.13426 1.51068 1.23863 1.17637 0.85819 0.80135 0.82820 1.90884 1.19378 1.60548 1.68312 1.21547 0.88656 0.96875 0.96719 1.67940 1.16169 1.17215 1.12281 1.23011 1.00215 0.91945 0.89177 1.22255 0.95030 1.00483 0.91751 1.98412 1.91201 1.80362 1.30981 1.21480 0.95540 0.98118 0.94399 1.21931 0.90247 0.99189 0.94929 1.98455 1.15711 1.96183 1.86748 0.93657 0.93101 0.94468 0.93564 0.94711 0.93545 0.88302 0.95165 0.92591 0.91365 0.75744 0.80342 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 10.21 37.16 0.38 -2.72 16 2 C 0.14 2.93 6.44 -4.04 -0.03 2.90 16 3 N -0.58 -13.98 2.43 -173.23 -0.42 -14.40 16 4 C -0.26 -6.96 9.45 -15.06 -0.14 -7.10 16 5 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.28 16 7 N -0.89 -24.63 11.47 55.49 0.64 -24.00 16 8 Si 0.90 21.35 29.60 -169.99 -5.03 16.32 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 C 0.14 3.05 5.45 -4.04 -0.02 3.02 16 13 C 0.10 1.93 6.00 -4.04 -0.02 1.90 16 14 N -0.69 -12.05 5.54 -61.19 -0.34 -12.39 16 15 C 0.55 9.51 7.80 -12.25 -0.10 9.41 16 16 O -0.52 -10.03 13.94 5.33 0.07 -9.95 16 17 C 0.10 1.43 6.75 -82.98 -0.56 0.87 16 18 N -0.42 -5.26 9.54 -9.75 -0.09 -5.36 16 19 C 0.12 1.09 10.98 -17.51 -0.19 0.90 16 20 C -0.07 -0.56 6.35 -39.22 -0.25 -0.81 16 21 Cl -0.04 -0.27 28.99 -51.86 -1.50 -1.77 16 22 C -0.07 -0.63 9.78 -39.24 -0.38 -1.01 16 23 C -0.03 -0.39 6.37 -38.95 -0.25 -0.64 16 24 Cl 0.00 -0.01 26.03 -51.86 -1.35 -1.36 16 25 H 0.04 0.84 6.64 -51.93 -0.34 0.49 16 26 H 0.05 0.99 8.14 -51.94 -0.42 0.56 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 29 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 30 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.10 2.47 5.52 -51.93 -0.29 2.19 16 32 H 0.03 0.63 7.86 -51.93 -0.41 0.22 16 33 H 0.06 1.13 6.64 -51.93 -0.34 0.79 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.41 6.47 7.80 -40.82 -0.32 6.15 16 36 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -29.53 346.54 -8.65 -38.18 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.19 Total: 2.50 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -1.65 Total: 7.01 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.22 Total: -56.14 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -2.85 Total: -3.13 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.53 -8.65 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753092136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.421 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds