Wall clock time and date at job start Tue Mar 31 2020 17:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.53005 * 109.47452 * 184.99601 * 3 2 1 6 6 N 1.46501 * 109.47085 * 184.99949 * 5 3 2 7 7 C 1.34776 * 119.99681 * 180.02562 * 6 5 3 8 8 O 1.21537 * 119.99861 * 0.02562 * 7 6 5 9 9 C 1.48016 * 120.00127 * 179.97438 * 7 6 5 10 10 N 1.32798 * 119.71857 * 359.73019 * 9 7 6 11 11 C 1.31436 * 121.66473 * 179.70795 * 10 9 7 12 12 C 1.38807 * 120.91862 * 0.56458 * 11 10 9 13 13 Cl 1.73593 * 120.32874 * 179.74641 * 12 11 10 14 14 C 1.38656 * 119.34476 * 359.72492 * 12 11 10 15 15 C 1.38736 * 118.46825 * 359.97438 * 14 12 11 16 16 Cl 1.73603 * 120.47864 * 179.97438 * 15 14 12 17 17 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 18 18 C 1.36936 * 119.99838 * 275.00217 * 17 3 2 19 19 H 1.07999 * 120.00085 * 0.02562 * 18 17 3 20 20 C 1.38815 * 119.99824 * 179.97438 * 18 17 3 21 21 N 1.31616 * 119.99954 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99939 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46941 * 90.00290 * 22 20 18 24 24 H 1.48500 * 109.47176 * 210.00256 * 22 20 18 25 25 H 1.48494 * 109.47445 * 330.00360 * 22 20 18 26 26 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 28 28 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 29 29 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 30 30 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 31 31 H 1.09000 * 109.46872 * 305.00625 * 5 3 2 32 32 H 1.09001 * 109.46455 * 65.00085 * 5 3 2 33 33 H 0.96998 * 120.00018 * 0.02562 * 6 5 3 34 34 H 1.07998 * 119.53919 * 180.29189 * 11 10 9 35 35 H 1.07999 * 120.76853 * 180.02562 * 14 12 11 36 36 H 0.97000 * 119.99812 * 94.99561 * 17 3 2 37 37 H 0.97000 * 120.00432 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1256 6 7 4.0631 2.8168 -0.0059 7 6 5.3857 3.0630 -0.0867 8 8 6.1650 2.1465 -0.2594 9 6 5.8891 4.4497 0.0338 10 7 5.0321 5.4477 0.2160 11 6 5.4375 6.6925 0.3335 12 6 6.7859 7.0135 0.2593 13 17 7.3037 8.6635 0.4100 14 6 7.7152 6.0031 0.0641 15 6 7.2588 4.6979 -0.0502 16 17 8.3766 3.3926 -0.2962 17 7 1.6524 2.0975 1.2518 18 6 0.4156 2.6735 1.3687 19 1 -0.2742 2.6446 0.5382 20 6 0.0482 3.2938 2.5550 21 7 0.8887 3.3286 3.5672 22 14 -1.6387 4.0801 2.7142 23 1 -2.6057 3.0774 3.2286 24 1 -1.5641 5.2250 3.6571 25 1 -2.0873 4.5632 1.3836 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9954 0.8310 0.6660 32 1 3.8499 1.0377 -1.0959 33 1 3.4411 3.5483 0.1316 34 1 4.7109 7.4769 0.4855 35 1 8.7700 6.2268 0.0033 36 1 2.2719 2.1231 1.9978 37 1 0.6322 3.7623 4.3960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753491378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:51 Heat of formation + Delta-G solvation = 1.751548 kcal Electronic energy + Delta-G solvation = -23355.824767 eV Core-core repulsion = 19606.513164 eV Total energy + Delta-G solvation = -3749.311604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86981 -38.96860 -37.13538 -36.79882 -36.60161 -33.82578 -32.79656 -32.31460 -31.42613 -29.72902 -27.96904 -25.11082 -24.13113 -23.47622 -22.43418 -20.53103 -19.98842 -18.29873 -17.51218 -17.26681 -16.87437 -15.60231 -15.42950 -15.39187 -15.05667 -14.37748 -14.20667 -13.92459 -13.65936 -13.26548 -13.09634 -12.95209 -12.74137 -12.47163 -12.14109 -12.04601 -11.85874 -11.48701 -11.36196 -10.94352 -10.88614 -10.71038 -10.41924 -10.33071 -10.19189 -10.00487 -10.00007 -9.52703 -9.41139 -9.22994 -8.93741 -8.62897 -7.01528 -5.79069 -3.08198 0.09448 0.58550 1.39598 1.90017 2.60004 3.21538 3.41193 3.47153 3.48397 3.55427 3.94110 4.19735 4.38957 4.55975 4.58984 4.71332 5.27404 5.35383 5.41233 5.45962 5.57146 5.82115 5.92659 5.96274 5.96884 6.13951 6.42935 6.53661 6.58018 6.60511 6.84131 7.02379 7.23313 7.25389 7.68485 7.88497 8.37621 8.42826 9.49973 10.04631 10.40457 11.42829 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.003672 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.738366 B = 7623.282744 C = 9690.057394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.113 3.887 6 N -0.686 5.686 7 C 0.558 3.442 8 O -0.524 6.524 9 C 0.101 3.899 10 N -0.416 5.416 11 C 0.121 3.879 12 C -0.064 4.064 13 Cl -0.039 7.039 14 C -0.070 4.070 15 C -0.032 4.032 16 Cl -0.004 7.004 17 N -0.721 5.721 18 C -0.237 4.237 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.929 5.929 22 Si 0.902 3.098 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.282 1.282 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.421 0.579 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.385 0.615 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.820 6.218 -8.766 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.011 4.011 6 N -0.337 5.337 7 C 0.341 3.659 8 O -0.400 6.400 9 C -0.039 4.039 10 N -0.127 5.127 11 C -0.040 4.040 12 C -0.094 4.094 13 Cl -0.010 7.010 14 C -0.097 4.097 15 C -0.063 4.063 16 Cl 0.025 6.975 17 N -0.363 5.363 18 C -0.368 4.368 19 H 0.091 0.909 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.260 0.740 34 H 0.197 0.803 35 H 0.178 0.822 36 H 0.219 0.781 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.423 5.420 -8.875 16.980 hybrid contribution -0.030 1.146 0.556 1.274 sum 13.393 6.566 -8.319 17.079 Atomic orbital electron populations 1.21770 0.95713 0.99622 1.03273 1.22068 0.96993 0.98329 1.00035 1.20567 0.89717 0.92889 0.91566 0.92765 1.21782 0.95898 0.82052 1.01388 1.45863 1.06578 1.11451 1.69825 1.17593 0.83495 0.86025 0.78813 1.90860 1.55754 1.43921 1.49477 1.21422 0.88702 0.95164 0.98573 1.68001 1.36495 0.99308 1.08888 1.23054 0.92501 0.93991 0.94504 1.22274 0.95169 0.87570 1.04375 1.98408 1.90764 1.15928 1.95907 1.21448 1.01335 0.89392 0.97519 1.21904 0.91761 0.90849 1.01788 1.98441 1.59117 1.45933 1.94014 1.42445 1.16806 1.65825 1.11216 1.19189 0.91838 1.27777 0.97958 0.90915 1.24713 0.97958 1.01524 0.96401 1.69660 1.35091 1.48949 1.03955 0.86274 0.84287 0.78799 0.77315 1.21828 1.21896 1.20764 0.94888 0.89642 0.94113 0.93828 0.92495 0.91428 0.91470 0.74048 0.80299 0.82191 0.78084 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.24 16 2 C -0.13 -2.27 5.61 -26.73 -0.15 -2.42 16 3 C 0.16 2.99 2.59 -67.93 -0.18 2.81 16 4 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 5 C 0.11 1.89 5.23 -4.04 -0.02 1.87 16 6 N -0.69 -11.81 5.38 -61.19 -0.33 -12.14 16 7 C 0.56 9.49 7.80 -12.25 -0.10 9.39 16 8 O -0.52 -9.57 13.94 5.33 0.07 -9.49 16 9 C 0.10 1.51 6.75 -82.99 -0.56 0.95 16 10 N -0.42 -6.01 9.54 -9.75 -0.09 -6.10 16 11 C 0.12 1.37 10.98 -17.51 -0.19 1.18 16 12 C -0.06 -0.64 6.35 -39.22 -0.25 -0.89 16 13 Cl -0.04 -0.33 28.98 -51.86 -1.50 -1.83 16 14 C -0.07 -0.70 9.78 -39.24 -0.38 -1.09 16 15 C -0.03 -0.41 6.37 -38.94 -0.25 -0.66 16 16 Cl 0.00 -0.06 26.03 -51.86 -1.35 -1.41 16 17 N -0.72 -16.40 4.51 -53.42 -0.24 -16.64 16 18 C -0.24 -5.99 7.75 -15.06 -0.12 -6.11 16 19 H 0.07 1.80 7.32 -52.49 -0.38 1.42 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -26.75 13.06 55.49 0.72 -26.02 16 22 Si 0.90 21.47 29.55 -169.99 -5.02 16.45 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.78 5.99 -51.93 -0.31 1.47 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.42 7.69 7.46 -40.82 -0.30 7.38 16 34 H 0.18 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.39 9.65 7.80 -40.82 -0.32 9.33 16 37 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -28.68 346.14 -8.73 -37.41 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -4.26 Total: 12.11 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.95 Total: 2.45 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.06 Total: -60.91 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -2.85 Total: -3.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.68 -8.73 -37.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753491378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.163 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds