Wall clock time and date at job start Tue Mar 31 2020 17:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.53005 * 109.47452 * 184.99601 * 3 2 1 6 6 N 1.46501 * 109.47085 * 184.99949 * 5 3 2 7 7 C 1.34776 * 119.99681 * 180.02562 * 6 5 3 8 8 O 1.21537 * 119.99861 * 0.02562 * 7 6 5 9 9 C 1.48016 * 120.00127 * 179.97438 * 7 6 5 10 10 N 1.32798 * 119.71857 * 359.73019 * 9 7 6 11 11 C 1.31436 * 121.66473 * 179.70795 * 10 9 7 12 12 C 1.38807 * 120.91862 * 0.56458 * 11 10 9 13 13 Cl 1.73593 * 120.32874 * 179.74641 * 12 11 10 14 14 C 1.38656 * 119.34476 * 359.72492 * 12 11 10 15 15 C 1.38736 * 118.46825 * 359.97438 * 14 12 11 16 16 Cl 1.73603 * 120.47864 * 179.97438 * 15 14 12 17 17 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 18 18 C 1.36936 * 119.99838 * 275.00217 * 17 3 2 19 19 H 1.07999 * 120.00085 * 0.02562 * 18 17 3 20 20 C 1.38815 * 119.99824 * 179.97438 * 18 17 3 21 21 N 1.31616 * 119.99954 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99939 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46941 * 90.00290 * 22 20 18 24 24 H 1.48500 * 109.47176 * 210.00256 * 22 20 18 25 25 H 1.48494 * 109.47445 * 330.00360 * 22 20 18 26 26 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 28 28 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 29 29 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 30 30 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 31 31 H 1.09000 * 109.46872 * 305.00625 * 5 3 2 32 32 H 1.09001 * 109.46455 * 65.00085 * 5 3 2 33 33 H 0.96998 * 120.00018 * 0.02562 * 6 5 3 34 34 H 1.07998 * 119.53919 * 180.29189 * 11 10 9 35 35 H 1.07999 * 120.76853 * 180.02562 * 14 12 11 36 36 H 0.97000 * 119.99812 * 94.99561 * 17 3 2 37 37 H 0.97000 * 120.00432 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1256 6 7 4.0631 2.8168 -0.0059 7 6 5.3857 3.0630 -0.0867 8 8 6.1650 2.1465 -0.2594 9 6 5.8891 4.4497 0.0338 10 7 5.0321 5.4477 0.2160 11 6 5.4375 6.6925 0.3335 12 6 6.7859 7.0135 0.2593 13 17 7.3037 8.6635 0.4100 14 6 7.7152 6.0031 0.0641 15 6 7.2588 4.6979 -0.0502 16 17 8.3766 3.3926 -0.2962 17 7 1.6524 2.0975 1.2518 18 6 0.4156 2.6735 1.3687 19 1 -0.2742 2.6446 0.5382 20 6 0.0482 3.2938 2.5550 21 7 0.8887 3.3286 3.5672 22 14 -1.6387 4.0801 2.7142 23 1 -2.6057 3.0774 3.2286 24 1 -1.5641 5.2250 3.6571 25 1 -2.0873 4.5632 1.3836 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9954 0.8310 0.6660 32 1 3.8499 1.0377 -1.0959 33 1 3.4411 3.5483 0.1316 34 1 4.7109 7.4769 0.4855 35 1 8.7700 6.2268 0.0033 36 1 2.2719 2.1231 1.9978 37 1 0.6322 3.7623 4.3960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753491378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:50 Heat of formation + Delta-G solvation = -16.418869 kcal Electronic energy + Delta-G solvation = -23356.612696 eV Core-core repulsion = 19606.513164 eV Total energy + Delta-G solvation = -3750.099532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.89777 -40.21243 -38.28485 -37.87583 -37.70043 -35.28847 -34.19621 -33.63976 -32.43096 -31.45722 -29.47743 -26.33465 -25.38338 -24.91107 -23.80260 -21.80374 -21.45351 -19.58878 -18.96269 -18.48779 -17.93853 -17.02738 -16.70945 -16.53928 -16.36400 -15.86417 -15.51339 -15.23616 -14.96443 -14.64713 -14.46377 -14.15590 -14.03428 -13.76632 -13.40133 -13.03622 -12.95811 -12.78708 -12.74832 -12.70940 -12.40429 -12.27766 -12.07108 -11.83841 -11.59662 -11.35526 -11.29590 -10.87960 -10.87505 -10.56805 -10.25146 -9.92496 -8.93971 -7.83942 -5.10797 -0.89131 -0.30160 0.53754 0.97091 1.48582 1.51896 1.52993 1.60104 2.02240 2.44639 2.62649 2.93180 3.33895 3.43496 3.50668 3.63215 3.77738 3.92349 3.98032 4.29928 4.41087 4.50450 4.54576 4.59480 4.75581 4.89989 4.93440 5.12205 5.15445 5.23223 5.45133 5.58757 5.64314 5.75327 6.23144 6.35925 6.56525 7.09100 7.43908 8.15634 8.40400 9.39150 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.003672 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.738366 B = 7623.282744 C = 9690.057394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.164 3.836 4 H 0.057 0.943 5 C 0.121 3.879 6 N -0.691 5.691 7 C 0.555 3.445 8 O -0.542 6.542 9 C 0.075 3.925 10 N -0.443 5.443 11 C 0.116 3.884 12 C -0.052 4.052 13 Cl -0.015 7.015 14 C -0.058 4.058 15 C -0.036 4.036 16 Cl -0.010 7.010 17 N -0.727 5.727 18 C -0.215 4.215 19 H 0.080 0.920 20 C -0.071 4.071 21 N -0.968 5.968 22 Si 0.958 3.042 23 H -0.295 1.295 24 H -0.302 1.302 25 H -0.269 1.269 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.415 0.585 34 H 0.200 0.800 35 H 0.191 0.809 36 H 0.372 0.628 37 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.371 7.045 -10.241 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.055 3.945 4 H 0.075 0.925 5 C -0.003 4.003 6 N -0.341 5.341 7 C 0.339 3.661 8 O -0.420 6.420 9 C -0.064 4.064 10 N -0.154 5.154 11 C -0.045 4.045 12 C -0.081 4.081 13 Cl 0.014 6.986 14 C -0.085 4.085 15 C -0.067 4.067 16 Cl 0.019 6.981 17 N -0.368 5.368 18 C -0.347 4.347 19 H 0.098 0.902 20 C -0.263 4.263 21 N -0.619 5.619 22 Si 0.789 3.211 23 H -0.222 1.222 24 H -0.230 1.230 25 H -0.194 1.194 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.253 0.747 34 H 0.217 0.783 35 H 0.208 0.792 36 H 0.203 0.797 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.972 6.223 -10.411 18.502 hybrid contribution -0.131 0.946 0.931 1.333 sum 13.841 7.169 -9.480 18.243 Atomic orbital electron populations 1.21700 0.96002 1.00584 1.01779 1.21980 0.96619 0.97142 1.01162 1.20725 0.90828 0.93416 0.89486 0.92481 1.21700 0.94532 0.82081 1.02017 1.45882 1.06815 1.11244 1.70180 1.17933 0.83095 0.87025 0.78044 1.90833 1.55960 1.44853 1.50364 1.21147 0.89693 0.94314 1.01205 1.67920 1.37214 1.00315 1.09926 1.23433 0.93802 0.93403 0.93857 1.22279 0.94635 0.88633 1.02576 1.98427 1.90481 1.14107 1.95611 1.21747 1.02838 0.88059 0.95835 1.21966 0.90915 0.91763 1.02021 1.98435 1.58993 1.46548 1.94074 1.42566 1.15797 1.66113 1.12309 1.19491 0.92374 1.25368 0.97458 0.90240 1.25345 1.00875 1.03466 0.96658 1.69810 1.36760 1.51060 1.04293 0.85359 0.80938 0.77456 0.77351 1.22233 1.22964 1.19397 0.92831 0.93322 0.93208 0.90479 0.93510 0.92456 0.89489 0.74730 0.78314 0.79160 0.79653 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.18 71.98 0.66 -4.14 16 2 C -0.13 -4.14 5.61 30.59 0.17 -3.97 16 3 C 0.16 5.88 2.59 44.99 0.12 5.99 16 4 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 5 C 0.12 3.99 5.23 86.38 0.45 4.44 16 6 N -0.69 -23.98 5.38 -465.79 -2.50 -26.49 16 7 C 0.55 19.05 7.80 86.84 0.68 19.72 16 8 O -0.54 -19.90 13.94 -3.83 -0.05 -19.95 16 9 C 0.07 2.23 6.75 41.89 0.28 2.51 16 10 N -0.44 -12.69 9.54 -184.75 -1.76 -14.45 16 11 C 0.12 2.50 10.98 84.89 0.93 3.43 16 12 C -0.05 -0.91 6.35 22.51 0.14 -0.77 16 13 Cl -0.02 -0.21 28.98 -2.72 -0.08 -0.29 16 14 C -0.06 -1.05 9.78 22.49 0.22 -0.83 16 15 C -0.04 -0.89 6.37 22.68 0.14 -0.74 16 16 Cl -0.01 -0.25 26.03 -2.72 -0.07 -0.32 16 17 N -0.73 -33.33 4.51 -322.92 -1.46 -34.79 16 18 C -0.22 -10.89 7.75 84.03 0.65 -10.24 16 19 H 0.08 3.87 7.32 -2.91 -0.02 3.85 16 20 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 21 N -0.97 -57.20 13.06 21.65 0.28 -56.91 16 22 Si 0.96 44.63 29.55 68.60 2.03 46.66 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.99 5.99 -2.39 -0.01 1.98 16 28 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.42 15.43 7.46 -92.71 -0.69 14.74 16 34 H 0.20 3.27 8.06 -2.91 -0.02 3.24 16 35 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.37 19.08 7.80 -92.71 -0.72 18.36 16 37 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -62.38 346.14 1.02 -61.36 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -0.28 Total: 33.21 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 4.92 Total: 11.98 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -5.44 Total: -132.64 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.05 Total: -19.95 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.15 Total: -0.61 kcal Total: -62.38 1.02 -61.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753491378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.939 kcal (2) G-P(sol) polarization free energy of solvation -62.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds