Wall clock time and date at job start Tue Mar 31 2020 17:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21528 * 119.99804 * 359.97438 * 7 6 5 9 9 C 1.48025 * 120.00228 * 179.97438 * 7 6 5 10 10 N 1.32799 * 119.71619 * 359.72143 * 9 7 6 11 11 C 1.31436 * 121.66242 * 179.70670 * 10 9 7 12 12 C 1.38803 * 120.91608 * 0.57613 * 11 10 9 13 13 Cl 1.73602 * 120.32614 * 179.73975 * 12 11 10 14 14 C 1.38660 * 119.34718 * 359.71312 * 12 11 10 15 15 C 1.38729 * 118.46899 * 0.02562 * 14 12 11 16 16 Cl 1.73602 * 120.47930 * 179.97438 * 15 14 12 17 17 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 18 18 C 1.36943 * 119.99752 * 84.72207 * 17 3 2 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 3 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 3 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 27 27 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 29 29 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 30 30 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 31 31 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 32 32 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 33 33 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 34 34 H 1.07997 * 119.53708 * 180.28758 * 11 10 9 35 35 H 1.08001 * 120.76496 * 180.02562 * 14 12 11 36 36 H 0.97001 * 120.00384 * 265.00562 * 17 3 2 37 37 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1650 2.1463 0.2578 9 6 5.8892 4.4495 -0.0356 10 7 5.0331 5.4462 -0.2289 11 6 5.4376 6.6921 -0.3364 12 6 6.7861 7.0129 -0.2632 13 17 7.3040 8.6630 -0.4140 14 6 7.7154 6.0025 -0.0678 15 6 7.2590 4.6976 0.0476 16 17 8.3769 3.3922 0.2925 17 7 1.6525 2.0975 -1.2518 18 6 0.4135 2.6685 -1.3707 19 1 -0.2763 2.6399 -0.5402 20 6 0.0441 3.2841 -2.5588 21 7 0.8846 3.3185 -3.5712 22 14 -1.6456 4.0637 -2.7208 23 1 -2.3942 3.8913 -1.4500 24 1 -1.4966 5.5118 -3.0144 25 1 -2.3891 3.4084 -3.8267 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.8498 1.0377 1.0961 32 1 3.9954 0.8311 -0.6659 33 1 3.4410 3.5482 -0.1315 34 1 4.7111 7.4765 -0.4886 35 1 8.7702 6.2263 -0.0069 36 1 2.2719 2.1231 -1.9978 37 1 0.6267 3.7490 -4.4012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753491379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:54 Heat of formation + Delta-G solvation = 1.711522 kcal Electronic energy + Delta-G solvation = -23355.104956 eV Core-core repulsion = 19605.791617 eV Total energy + Delta-G solvation = -3749.313339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87093 -38.97086 -37.13557 -36.80009 -36.60419 -33.82859 -32.79745 -32.31382 -31.42686 -29.72907 -27.97139 -25.11199 -24.13213 -23.47924 -22.43363 -20.53193 -19.99069 -18.29991 -17.51274 -17.26785 -16.87530 -15.60172 -15.43443 -15.39192 -15.05919 -14.37678 -14.20729 -13.92131 -13.66137 -13.26801 -13.09615 -12.95584 -12.74243 -12.47188 -12.14201 -12.04741 -11.85884 -11.48745 -11.36243 -10.95626 -10.88284 -10.71514 -10.42022 -10.33099 -10.18197 -10.00095 -9.98634 -9.53014 -9.41189 -9.23091 -8.94365 -8.63034 -7.01553 -5.79396 -3.08481 0.09377 0.58519 1.39519 1.89956 2.59949 3.21420 3.40735 3.47169 3.49002 3.55387 3.94031 4.19699 4.38881 4.55788 4.58927 4.71268 5.27347 5.35322 5.41158 5.45789 5.57093 5.82060 5.92468 5.96255 5.96881 6.13934 6.42900 6.53619 6.58034 6.60510 6.84034 7.02373 7.23309 7.25560 7.68836 7.88373 8.37372 8.42717 9.49765 10.04421 10.40164 11.42581 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011349 B = 0.003667 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.541581 B = 7634.160512 C = 9697.058112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.113 3.887 6 N -0.686 5.686 7 C 0.558 3.442 8 O -0.524 6.524 9 C 0.101 3.899 10 N -0.416 5.416 11 C 0.120 3.880 12 C -0.064 4.064 13 Cl -0.039 7.039 14 C -0.070 4.070 15 C -0.032 4.032 16 Cl -0.004 7.004 17 N -0.721 5.721 18 C -0.236 4.236 19 H 0.074 0.926 20 C -0.010 4.010 21 N -0.928 5.928 22 Si 0.901 3.099 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.293 1.293 26 H 0.085 0.915 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.421 0.579 34 H 0.180 0.820 35 H 0.161 0.839 36 H 0.385 0.615 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.824 6.213 8.817 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.011 4.011 6 N -0.337 5.337 7 C 0.341 3.659 8 O -0.400 6.400 9 C -0.039 4.039 10 N -0.127 5.127 11 C -0.041 4.041 12 C -0.094 4.094 13 Cl -0.010 7.010 14 C -0.097 4.097 15 C -0.063 4.063 16 Cl 0.025 6.975 17 N -0.363 5.363 18 C -0.367 4.367 19 H 0.092 0.908 20 C -0.206 4.206 21 N -0.576 5.576 22 Si 0.733 3.267 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.220 1.220 26 H 0.104 0.896 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.259 0.741 34 H 0.197 0.803 35 H 0.178 0.822 36 H 0.219 0.781 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.423 5.404 8.918 16.998 hybrid contribution -0.024 1.152 -0.563 1.282 sum 13.400 6.556 8.355 17.098 Atomic orbital electron populations 1.21772 0.95707 0.99621 1.03291 1.22068 0.96998 0.98331 1.00036 1.20566 0.89723 0.92880 0.91570 0.92763 1.21780 0.95884 0.82053 1.01391 1.45863 1.06575 1.11452 1.69835 1.17592 0.83495 0.86022 0.78813 1.90858 1.55755 1.43908 1.49483 1.21425 0.88718 0.95189 0.98542 1.68002 1.36503 0.99308 1.08865 1.23054 0.92508 0.93964 0.94534 1.22275 0.95162 0.87568 1.04374 1.98409 1.90763 1.15935 1.95904 1.21448 1.01341 0.89396 0.97514 1.21901 0.91753 0.90855 1.01788 1.98441 1.59105 1.45914 1.94043 1.42458 1.16674 1.65943 1.11236 1.19238 0.91702 1.27884 0.97849 0.90848 1.24716 0.97962 1.01575 0.96382 1.69676 1.35041 1.49071 1.03858 0.86206 0.84204 0.78885 0.77418 1.20557 1.21948 1.22007 0.89630 0.94892 0.94112 0.92493 0.93831 0.91463 0.91427 0.74052 0.80300 0.82190 0.78085 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.17 37.15 0.34 -2.25 16 2 C -0.13 -2.27 5.61 -26.74 -0.15 -2.42 16 3 C 0.16 2.98 2.59 -67.93 -0.18 2.81 16 4 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 5 C 0.11 1.89 5.23 -4.04 -0.02 1.87 16 6 N -0.69 -11.80 5.38 -61.19 -0.33 -12.13 16 7 C 0.56 9.48 7.80 -12.25 -0.10 9.39 16 8 O -0.52 -9.56 13.94 5.34 0.07 -9.49 16 9 C 0.10 1.51 6.75 -82.98 -0.56 0.95 16 10 N -0.42 -6.01 9.54 -9.75 -0.09 -6.10 16 11 C 0.12 1.37 10.98 -17.51 -0.19 1.18 16 12 C -0.06 -0.64 6.35 -39.22 -0.25 -0.89 16 13 Cl -0.04 -0.33 28.99 -51.86 -1.50 -1.83 16 14 C -0.07 -0.70 9.78 -39.24 -0.38 -1.09 16 15 C -0.03 -0.41 6.37 -38.95 -0.25 -0.66 16 16 Cl 0.00 -0.06 26.03 -51.86 -1.35 -1.41 16 17 N -0.72 -16.40 4.51 -53.43 -0.24 -16.64 16 18 C -0.24 -5.96 7.74 -15.06 -0.12 -6.08 16 19 H 0.07 1.82 7.31 -52.49 -0.38 1.44 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -26.76 13.06 55.49 0.72 -26.03 16 22 Si 0.90 21.47 29.55 -169.99 -5.02 16.45 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H 0.08 1.79 5.97 -51.93 -0.31 1.48 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.42 7.67 7.46 -40.82 -0.30 7.37 16 34 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.39 9.65 7.80 -40.82 -0.32 9.33 16 37 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -28.72 346.10 -8.73 -37.45 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.25 Total: 12.07 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.95 Total: 2.45 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.06 Total: -60.90 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -2.85 Total: -3.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.72 -8.73 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753491379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.159 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds