Wall clock time and date at job start Tue Mar 31 2020 17:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47086 * 2 1 4 4 C 1.46495 * 120.00763 * 262.91207 * 3 2 1 5 5 C 1.53005 * 109.47086 * 270.00348 * 4 3 2 6 6 N 1.46492 * 109.47040 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00002 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00254 * 0.02562 * 7 6 5 9 9 C 1.38811 * 120.00169 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99931 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99993 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47218 * 90.00303 * 11 9 7 13 13 H 1.48498 * 109.46865 * 210.00316 * 11 9 7 14 14 H 1.48505 * 109.47088 * 329.99948 * 11 9 7 15 15 C 1.34785 * 119.99413 * 82.90918 * 3 2 1 16 16 O 1.21530 * 119.99533 * 183.68559 * 15 3 2 17 17 C 1.48024 * 120.00018 * 3.68813 * 15 3 2 18 18 N 1.32791 * 119.72169 * 353.86877 * 17 15 3 19 19 C 1.31435 * 121.66597 * 179.97438 * 18 17 15 20 20 C 1.38801 * 120.91685 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.32523 * 180.02562 * 20 19 18 22 22 C 1.38658 * 119.34615 * 0.02562 * 20 19 18 23 23 C 1.38732 * 118.47039 * 359.97438 * 22 20 19 24 24 Cl 1.73602 * 120.48135 * 179.97438 * 23 22 20 25 25 H 1.08994 * 109.47072 * 299.99450 * 1 2 3 26 26 H 1.09002 * 109.47082 * 60.00048 * 1 2 3 27 27 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46761 * 240.00617 * 2 1 3 29 29 H 1.08996 * 109.47039 * 120.00377 * 2 1 3 30 30 H 1.09005 * 109.46578 * 29.99683 * 4 3 2 31 31 H 1.08996 * 109.47577 * 150.00030 * 4 3 2 32 32 H 1.09004 * 109.46814 * 299.99707 * 5 4 3 33 33 H 1.09004 * 109.46947 * 59.99198 * 5 4 3 34 34 H 0.97002 * 120.00746 * 0.02562 * 6 5 4 35 35 H 0.97002 * 120.00011 * 179.97438 * 10 9 7 36 36 H 1.07999 * 119.53659 * 180.27981 * 19 18 17 37 37 H 1.08003 * 120.76210 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4101 2.0198 -1.2589 5 6 3.8962 1.7648 -1.5192 6 7 4.2878 2.4029 -2.7784 7 6 5.5805 2.3094 -3.2203 8 1 6.3113 1.7649 -2.6407 9 6 5.9515 2.9135 -4.4137 10 7 5.0609 3.5766 -5.1203 11 14 7.7149 2.7853 -5.0168 12 1 7.8596 1.5789 -5.8705 13 1 8.0568 3.9950 -5.8073 14 1 8.6300 2.6802 -3.8520 15 6 2.1071 2.0645 1.1584 16 8 2.4481 3.2310 1.1512 17 6 1.7892 1.3942 2.4393 18 7 1.3008 0.1594 2.4327 19 6 1.0058 -0.4719 3.5472 20 6 1.1959 0.1336 4.7816 21 17 0.8016 -0.7146 6.2440 22 6 1.7039 1.4227 4.8351 23 6 2.0063 2.0644 3.6429 24 17 2.6443 3.6789 3.6490 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.8214 1.6031 -2.0762 31 1 2.2317 3.0930 -1.1929 32 1 4.4849 2.1815 -0.7019 33 1 4.0746 0.6915 -1.5851 34 1 3.6317 2.8923 -3.2989 35 1 5.3202 3.9991 -5.9541 36 1 0.6145 -1.4775 3.5019 37 1 1.8606 1.9157 5.7831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754074089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:50 Heat of formation + Delta-G solvation = 33.250842 kcal Electronic energy + Delta-G solvation = -23429.093450 eV Core-core repulsion = 19681.147758 eV Total energy + Delta-G solvation = -3747.945692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.27912 -39.26558 -37.29060 -36.97860 -36.16141 -34.60768 -33.04622 -31.88764 -31.33827 -30.20756 -27.73486 -25.21205 -24.36571 -23.54029 -23.17015 -21.62644 -19.91202 -17.90063 -17.74757 -17.14707 -17.02647 -15.92016 -15.81564 -15.48079 -14.89071 -14.50199 -14.32359 -14.12419 -13.64300 -13.44899 -13.28412 -13.17094 -12.91178 -12.72219 -12.43379 -12.32989 -12.02708 -11.83520 -11.50963 -11.24722 -11.07748 -10.95611 -10.86535 -10.64916 -10.21284 -10.10008 -10.02990 -9.73036 -9.39802 -9.37452 -8.84178 -8.45006 -6.89973 -5.73020 -3.02089 -0.10722 0.36035 1.22644 1.76461 2.40004 2.86668 3.30926 3.46631 3.51522 3.53750 3.64378 3.99164 4.08305 4.32428 4.42794 4.64432 4.96808 5.13619 5.16506 5.37670 5.46897 5.52355 5.58150 5.69825 5.80061 5.87091 6.01275 6.09060 6.20756 6.34462 6.60468 6.76400 6.91449 6.98866 7.46936 7.73474 8.15212 8.45529 9.56463 10.12696 10.47846 11.49946 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.002735 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.903659 B =10236.158053 C =10801.527987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 N -0.583 5.583 4 C 0.107 3.893 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.557 3.443 16 O -0.503 6.503 17 C 0.099 3.901 18 N -0.414 5.414 19 C 0.107 3.893 20 C -0.063 4.063 21 Cl -0.039 7.039 22 C -0.068 4.068 23 C -0.030 4.030 24 Cl 0.003 6.997 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.022 0.978 33 H 0.019 0.981 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.179 0.821 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.399 -10.235 23.824 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.029 4.029 3 N -0.315 5.315 4 C -0.016 4.016 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.342 3.658 16 O -0.377 6.377 17 C -0.040 4.040 18 N -0.125 5.125 19 C -0.053 4.053 20 C -0.092 4.092 21 Cl -0.010 7.010 22 C -0.095 4.095 23 C -0.060 4.060 24 Cl 0.033 6.967 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.196 0.804 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.128 -9.939 23.089 28.359 hybrid contribution 0.848 0.410 0.449 1.043 sum -12.280 -9.530 23.538 28.207 Atomic orbital electron populations 1.22030 0.95965 1.01719 1.01435 1.22162 0.94580 0.81817 1.04297 1.47819 1.62532 1.14632 1.06483 1.21799 0.97074 0.99360 0.83319 1.20904 0.91533 0.95932 0.90125 1.42201 1.09819 1.63820 1.21623 1.19201 0.86773 1.27719 1.03108 0.91219 1.24745 0.97889 1.00637 0.97745 1.69661 1.32941 1.39588 1.16038 0.86167 0.84427 0.76996 0.78473 1.21718 1.21734 1.20754 1.17636 0.79423 0.86112 0.82672 1.90928 1.46150 1.14870 1.85763 1.21434 0.97732 0.90744 0.94040 1.68591 1.09367 1.06743 1.27848 1.23175 0.95771 1.00844 0.85503 1.22274 1.02663 0.94206 0.90076 1.98418 1.92073 1.76421 1.34065 1.21497 0.96391 0.92915 0.98698 1.21932 0.99674 0.90938 0.93487 1.98474 1.83298 1.16407 1.98561 0.92829 0.93087 0.91853 0.90725 0.87044 0.90147 0.89440 0.95978 0.96327 0.78233 0.93501 0.80408 0.82097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.60 37.16 0.36 -1.17 16 2 C 0.09 1.09 5.70 -4.04 -0.02 1.07 16 3 N -0.58 -8.68 2.49 -174.73 -0.44 -9.12 16 4 C 0.11 1.86 5.52 -4.04 -0.02 1.84 16 5 C 0.14 3.08 6.58 -4.04 -0.03 3.05 16 6 N -0.73 -19.24 5.60 -59.91 -0.34 -19.58 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 11 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.56 8.71 7.58 -12.24 -0.09 8.61 16 16 O -0.50 -9.37 13.54 5.34 0.07 -9.29 16 17 C 0.10 1.22 6.52 -82.99 -0.54 0.68 16 18 N -0.41 -4.06 4.40 -9.75 -0.04 -4.10 16 19 C 0.11 0.76 10.98 -17.51 -0.19 0.57 16 20 C -0.06 -0.44 6.35 -39.22 -0.25 -0.69 16 21 Cl -0.04 -0.23 28.99 -51.86 -1.50 -1.73 16 22 C -0.07 -0.55 9.78 -39.24 -0.38 -0.93 16 23 C -0.03 -0.33 6.37 -38.95 -0.25 -0.58 16 24 Cl 0.00 0.04 26.05 -51.86 -1.35 -1.31 16 25 H 0.05 0.56 6.84 -51.93 -0.36 0.20 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 29 H 0.11 1.20 5.17 -53.33 -0.28 0.93 16 30 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.09 1.67 7.37 -51.93 -0.38 1.29 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.38 10.49 7.67 -40.82 -0.31 10.18 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -33.09 343.44 -8.63 -41.72 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.24 Total: 3.50 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.67 Total: 4.93 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.09 Total: -60.88 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.29 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -2.85 Total: -3.04 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.09 -8.63 -41.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754074089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.975 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds