Wall clock time and date at job start Tue Mar 31 2020 17:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47086 * 2 1 4 4 C 1.46495 * 120.00763 * 262.91207 * 3 2 1 5 5 C 1.53005 * 109.47086 * 270.00348 * 4 3 2 6 6 N 1.46492 * 109.47040 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00002 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00254 * 0.02562 * 7 6 5 9 9 C 1.38811 * 120.00169 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99931 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99993 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47218 * 90.00303 * 11 9 7 13 13 H 1.48498 * 109.46865 * 210.00316 * 11 9 7 14 14 H 1.48505 * 109.47088 * 329.99948 * 11 9 7 15 15 C 1.34785 * 119.99413 * 82.90918 * 3 2 1 16 16 O 1.21530 * 119.99533 * 183.68559 * 15 3 2 17 17 C 1.48024 * 120.00018 * 3.68813 * 15 3 2 18 18 N 1.32791 * 119.72169 * 353.86877 * 17 15 3 19 19 C 1.31435 * 121.66597 * 179.97438 * 18 17 15 20 20 C 1.38801 * 120.91685 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.32523 * 180.02562 * 20 19 18 22 22 C 1.38658 * 119.34615 * 0.02562 * 20 19 18 23 23 C 1.38732 * 118.47039 * 359.97438 * 22 20 19 24 24 Cl 1.73602 * 120.48135 * 179.97438 * 23 22 20 25 25 H 1.08994 * 109.47072 * 299.99450 * 1 2 3 26 26 H 1.09002 * 109.47082 * 60.00048 * 1 2 3 27 27 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46761 * 240.00617 * 2 1 3 29 29 H 1.08996 * 109.47039 * 120.00377 * 2 1 3 30 30 H 1.09005 * 109.46578 * 29.99683 * 4 3 2 31 31 H 1.08996 * 109.47577 * 150.00030 * 4 3 2 32 32 H 1.09004 * 109.46814 * 299.99707 * 5 4 3 33 33 H 1.09004 * 109.46947 * 59.99198 * 5 4 3 34 34 H 0.97002 * 120.00746 * 0.02562 * 6 5 4 35 35 H 0.97002 * 120.00011 * 179.97438 * 10 9 7 36 36 H 1.07999 * 119.53659 * 180.27981 * 19 18 17 37 37 H 1.08003 * 120.76210 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4101 2.0198 -1.2589 5 6 3.8962 1.7648 -1.5192 6 7 4.2878 2.4029 -2.7784 7 6 5.5805 2.3094 -3.2203 8 1 6.3113 1.7649 -2.6407 9 6 5.9515 2.9135 -4.4137 10 7 5.0609 3.5766 -5.1203 11 14 7.7149 2.7853 -5.0168 12 1 7.8596 1.5789 -5.8705 13 1 8.0568 3.9950 -5.8073 14 1 8.6300 2.6802 -3.8520 15 6 2.1071 2.0645 1.1584 16 8 2.4481 3.2310 1.1512 17 6 1.7892 1.3942 2.4393 18 7 1.3008 0.1594 2.4327 19 6 1.0058 -0.4719 3.5472 20 6 1.1959 0.1336 4.7816 21 17 0.8016 -0.7146 6.2440 22 6 1.7039 1.4227 4.8351 23 6 2.0063 2.0644 3.6429 24 17 2.6443 3.6789 3.6490 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.8214 1.6031 -2.0762 31 1 2.2317 3.0930 -1.1929 32 1 4.4849 2.1815 -0.7019 33 1 4.0746 0.6915 -1.5851 34 1 3.6317 2.8923 -3.2989 35 1 5.3202 3.9991 -5.9541 36 1 0.6145 -1.4775 3.5019 37 1 1.8606 1.9157 5.7831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754074089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:50 Heat of formation + Delta-G solvation = 13.021827 kcal Electronic energy + Delta-G solvation = -23429.970646 eV Core-core repulsion = 19681.147758 eV Total energy + Delta-G solvation = -3748.822888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14119 -40.32637 -37.98574 -37.81363 -37.44045 -36.37671 -34.03104 -33.36173 -32.35971 -31.49858 -29.29894 -26.43543 -25.41049 -24.82900 -24.19572 -23.27400 -21.03969 -19.30886 -18.66458 -18.55859 -17.93971 -17.15988 -16.90783 -16.47967 -16.32349 -15.67877 -15.52752 -15.28247 -15.15383 -14.93037 -14.71790 -14.35640 -13.90744 -13.63964 -13.36740 -13.14431 -13.07932 -12.92472 -12.78028 -12.71270 -12.64322 -12.36234 -12.24976 -12.13756 -11.89555 -11.85011 -11.12485 -10.98232 -10.83501 -10.36782 -10.17435 -9.65759 -9.07145 -7.98022 -5.28853 -0.89703 -0.31138 0.57327 0.99253 1.45216 1.47101 1.48745 1.57186 1.75910 2.38736 2.54817 2.80797 3.27490 3.35208 3.41867 3.52720 3.77763 4.03156 4.05734 4.21724 4.29701 4.30797 4.53975 4.55913 4.59357 4.73477 4.85909 4.94253 5.05744 5.11095 5.22310 5.43880 5.51814 5.59221 6.18490 6.23513 6.35863 6.98566 7.29604 8.00866 8.26751 9.25395 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.002735 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.903659 B =10236.158053 C =10801.527987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.091 3.909 3 N -0.584 5.584 4 C 0.123 3.877 5 C 0.151 3.849 6 N -0.742 5.742 7 C -0.250 4.250 8 H 0.073 0.927 9 C -0.073 4.073 10 N -0.968 5.968 11 Si 0.978 3.022 12 H -0.281 1.281 13 H -0.293 1.293 14 H -0.272 1.272 15 C 0.549 3.451 16 O -0.545 6.545 17 C 0.079 3.921 18 N -0.416 5.416 19 C 0.118 3.882 20 C -0.051 4.051 21 Cl -0.018 7.018 22 C -0.061 4.061 23 C -0.040 4.040 24 Cl -0.022 7.022 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.001 0.999 33 H 0.029 0.971 34 H 0.376 0.624 35 H 0.254 0.746 36 H 0.216 0.784 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.934 -12.860 25.583 31.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 N -0.315 5.315 4 C -0.001 4.001 5 C 0.024 3.976 6 N -0.385 5.385 7 C -0.382 4.382 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.618 5.618 11 Si 0.806 3.194 12 H -0.208 1.208 13 H -0.219 1.219 14 H -0.197 1.197 15 C 0.336 3.664 16 O -0.422 6.422 17 C -0.058 4.058 18 N -0.128 5.128 19 C -0.042 4.042 20 C -0.081 4.081 21 Cl 0.012 6.988 22 C -0.087 4.087 23 C -0.071 4.071 24 Cl 0.007 6.993 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.142 0.858 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.019 0.981 33 H 0.047 0.953 34 H 0.208 0.792 35 H 0.062 0.938 36 H 0.233 0.767 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.679 -12.611 24.885 31.071 hybrid contribution 0.930 1.086 0.081 1.432 sum -12.749 -11.525 24.966 30.310 Atomic orbital electron populations 1.21959 0.94429 1.03188 1.00679 1.22423 0.95787 0.79838 1.04995 1.47911 1.62383 1.15829 1.05380 1.21406 0.94693 0.98597 0.85375 1.20922 0.93787 0.95564 0.87367 1.42376 1.09086 1.64093 1.22975 1.19576 0.87906 1.27390 1.03287 0.90938 1.25624 1.02201 1.00665 0.98061 1.69819 1.34962 1.40653 1.16366 0.85086 0.79426 0.76898 0.78005 1.20765 1.21925 1.19686 1.18193 0.78497 0.85858 0.83854 1.90895 1.47971 1.16735 1.86584 1.20908 1.00309 0.92050 0.92526 1.68487 1.09504 1.05637 1.29221 1.23768 0.94103 1.01747 0.84631 1.22347 1.01062 0.93690 0.90951 1.98440 1.91707 1.75813 1.32889 1.21707 0.95377 0.93222 0.98400 1.21997 1.00684 0.90109 0.94280 1.98461 1.83836 1.18354 1.98620 0.93284 0.94140 0.89159 0.90569 0.85798 0.88646 0.91616 0.98104 0.95313 0.79191 0.93769 0.76744 0.79959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.60 71.98 0.69 -1.90 16 2 C 0.09 1.97 5.70 86.38 0.49 2.47 16 3 N -0.58 -17.54 2.49 -825.02 -2.06 -19.60 16 4 C 0.12 4.42 5.52 86.38 0.48 4.90 16 5 C 0.15 6.65 6.58 86.38 0.57 7.21 16 6 N -0.74 -40.09 5.60 -343.45 -1.92 -42.01 16 7 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 9 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 10 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 11 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 14 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 15 C 0.55 17.62 7.58 86.84 0.66 18.28 16 16 O -0.54 -21.42 13.54 -3.81 -0.05 -21.47 16 17 C 0.08 1.91 6.52 41.89 0.27 2.18 16 18 N -0.42 -7.25 4.40 -184.75 -0.81 -8.07 16 19 C 0.12 1.27 10.98 84.89 0.93 2.20 16 20 C -0.05 -0.55 6.35 22.50 0.14 -0.41 16 21 Cl -0.02 -0.15 28.99 -2.72 -0.08 -0.22 16 22 C -0.06 -0.84 9.78 22.49 0.22 -0.62 16 23 C -0.04 -0.87 6.37 22.68 0.14 -0.72 16 24 Cl -0.02 -0.58 26.05 -2.72 -0.07 -0.65 16 25 H 0.05 0.93 6.84 -2.39 -0.02 0.92 16 26 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.63 8.02 -2.39 -0.02 1.61 16 29 H 0.12 2.42 5.17 -5.15 -0.03 2.39 16 30 H 0.10 3.12 8.07 -2.38 -0.02 3.10 16 31 H 0.07 2.66 7.37 -2.39 -0.02 2.64 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.38 21.23 7.67 -92.71 -0.71 20.52 16 35 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.22 0.68 8.06 -2.91 -0.02 0.65 16 37 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -73.31 343.44 3.62 -69.70 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.39 Total: 17.48 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 5.91 Total: 15.90 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -4.51 Total: -130.08 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.15 Total: -0.87 kcal Total: -73.31 3.62 -69.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754074089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.717 kcal (2) G-P(sol) polarization free energy of solvation -73.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds