Wall clock time and date at job start Tue Mar 31 2020 17:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47283 * 2 1 4 4 C 1.52998 * 109.46928 * 239.99705 * 2 1 3 5 5 N 1.46504 * 109.47136 * 185.00419 * 4 2 1 6 6 C 1.46497 * 119.99587 * 269.99922 * 5 4 2 7 7 C 1.36938 * 120.00137 * 89.99697 * 5 4 2 8 8 H 1.08000 * 119.99693 * 22.36805 * 7 5 4 9 9 C 1.38805 * 119.99874 * 202.37018 * 7 5 4 10 10 N 1.31618 * 120.00336 * 11.22561 * 9 7 5 11 11 Si 1.86810 * 119.99782 * 191.22978 * 9 7 5 12 12 H 1.48503 * 109.47174 * 89.99881 * 11 9 7 13 13 H 1.48497 * 109.46952 * 209.99933 * 11 9 7 14 14 H 1.48499 * 109.47067 * 329.99743 * 11 9 7 15 15 N 1.46499 * 109.46855 * 119.99799 * 2 1 3 16 16 C 1.34777 * 120.00250 * 274.99668 * 15 2 1 17 17 O 1.21532 * 119.99579 * 0.02562 * 16 15 2 18 18 C 1.48019 * 120.00416 * 179.97438 * 16 15 2 19 19 N 1.32805 * 119.71975 * 359.73245 * 18 16 15 20 20 C 1.31427 * 121.66326 * 179.70502 * 19 18 16 21 21 C 1.38802 * 120.92129 * 0.56914 * 20 19 18 22 22 Cl 1.73597 * 120.33087 * 179.74524 * 21 20 19 23 23 C 1.38662 * 119.34658 * 359.72086 * 21 20 19 24 24 C 1.38737 * 118.46457 * 359.97438 * 23 21 20 25 25 Cl 1.73602 * 120.47455 * 179.97438 * 24 23 21 26 26 H 1.09001 * 109.46940 * 59.99955 * 1 2 3 27 27 H 1.09000 * 109.47788 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47355 * 300.00744 * 1 2 3 29 29 H 1.09006 * 109.47234 * 305.00042 * 4 2 1 30 30 H 1.09000 * 109.47582 * 65.00371 * 4 2 1 31 31 H 1.09000 * 109.46810 * 94.24406 * 6 5 4 32 32 H 1.08999 * 109.46639 * 214.23801 * 6 5 4 33 33 H 1.08997 * 109.47485 * 334.23896 * 6 5 4 34 34 H 0.97001 * 119.99699 * 180.02562 * 10 9 7 35 35 H 0.97004 * 120.00326 * 94.99871 * 15 2 1 36 36 H 1.07997 * 119.53780 * 180.28666 * 20 19 18 37 37 H 1.07999 * 120.76988 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8266 -1.1905 6 6 4.3343 0.2338 -1.7613 7 6 4.0849 -1.9160 -0.6022 8 1 3.5338 -2.8402 -0.5089 9 6 5.3859 -1.8326 -0.1257 10 7 5.9798 -0.6615 -0.0352 11 14 6.2940 -3.3825 0.3871 12 1 7.0217 -3.9394 -0.7815 13 1 7.2630 -3.0551 1.4637 14 1 5.3191 -4.3850 0.8868 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8576 1.1609 2.4118 18 6 2.6398 -0.7161 3.5659 19 7 2.9484 -2.0061 3.5016 20 6 3.3946 -2.6619 4.5495 21 6 3.5498 -2.0280 5.7746 22 17 4.1342 -2.9106 7.1505 23 6 3.2340 -0.6827 5.8885 24 6 2.7713 -0.0146 4.7640 25 17 2.3600 1.6699 4.8478 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3634 0.5140 0.8900 29 1 1.6053 -1.7199 -1.2951 30 1 1.7517 -0.1584 -2.1370 31 1 4.6025 0.9452 -0.9801 32 1 5.2402 -0.2032 -2.1813 33 1 3.7810 0.7483 -2.5469 34 1 6.8891 -0.6033 0.2975 35 1 2.2489 -1.6318 1.1527 36 1 3.6396 -3.7097 4.4573 37 1 3.3465 -0.1666 6.8305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754328888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:18 Heat of formation + Delta-G solvation = 21.483325 kcal Electronic energy + Delta-G solvation = -24447.122646 eV Core-core repulsion = 20698.666677 eV Total energy + Delta-G solvation = -3748.455970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.61151 -38.74148 -36.95714 -36.54885 -36.21147 -33.98003 -32.71551 -31.52132 -30.94867 -29.77024 -26.15751 -25.57884 -24.83762 -23.82696 -21.92880 -20.77255 -19.69932 -18.08075 -17.29294 -16.81415 -16.55646 -15.39623 -15.22516 -15.10269 -14.80456 -14.14817 -13.93309 -13.62057 -13.47848 -13.06025 -12.90835 -12.80966 -12.38183 -12.16433 -11.91053 -11.82270 -11.65524 -11.38273 -11.30297 -11.08646 -10.84986 -10.65967 -10.39921 -10.24123 -10.05667 -10.00048 -9.80122 -9.78589 -9.06992 -8.97850 -8.53889 -8.24314 -6.75722 -5.70983 -3.16844 0.35172 0.81188 1.58236 2.12687 2.90435 3.36195 3.42958 3.44213 3.53396 3.92337 4.19401 4.39768 4.49539 4.64122 4.81167 4.95803 5.36982 5.48515 5.53010 5.58175 5.68810 5.89009 5.99411 6.07003 6.18294 6.26903 6.46714 6.52184 6.76518 6.89341 7.23319 7.40909 7.49675 7.74611 7.82399 8.27486 8.39364 8.84296 9.23612 9.87218 10.36457 11.33249 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.010218 B = 0.005611 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.646892 B = 4988.984418 C = 6747.618519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.079 0.921 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.165 3.835 7 C -0.252 4.252 8 H 0.067 0.933 9 C 0.010 3.990 10 N -0.900 5.900 11 Si 0.894 3.106 12 H -0.290 1.290 13 H -0.293 1.293 14 H -0.276 1.276 15 N -0.661 5.661 16 C 0.563 3.437 17 O -0.531 6.531 18 C 0.112 3.888 19 N -0.414 5.414 20 C 0.117 3.883 21 C -0.068 4.068 22 Cl -0.045 7.045 23 C -0.071 4.071 24 C -0.034 4.034 25 Cl -0.006 7.006 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.044 0.956 33 H -0.005 1.005 34 H 0.250 0.750 35 H 0.414 0.586 36 H 0.176 0.824 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 -1.814 10.807 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 H 0.097 0.903 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.382 4.382 8 H 0.085 0.915 9 C -0.189 4.189 10 N -0.545 5.545 11 Si 0.725 3.275 12 H -0.217 1.217 13 H -0.220 1.220 14 H -0.201 1.201 15 N -0.310 5.310 16 C 0.346 3.654 17 O -0.408 6.408 18 C -0.027 4.027 19 N -0.124 5.124 20 C -0.044 4.044 21 C -0.098 4.098 22 Cl -0.016 7.016 23 C -0.098 4.098 24 C -0.065 4.065 25 Cl 0.023 6.977 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.014 0.986 34 H 0.061 0.939 35 H 0.252 0.748 36 H 0.193 0.807 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.009 -1.273 10.133 12.978 hybrid contribution 1.139 -0.789 1.451 2.006 sum -6.870 -2.062 11.584 13.624 Atomic orbital electron populations 1.22155 0.96649 1.01377 1.01655 1.21938 0.91947 0.98511 0.86758 0.90259 1.21199 0.86040 0.97952 0.93462 1.43915 0.98869 1.22677 1.66610 1.20792 0.92960 0.90452 0.93809 1.19064 0.97093 0.89394 1.32629 0.91503 1.24955 0.98677 0.96043 0.99229 1.70076 1.13226 1.21555 1.49623 0.86401 0.79929 0.83247 0.77944 1.21681 1.21967 1.20111 1.45608 1.62697 1.14968 1.07703 1.17476 0.79078 0.86124 0.82738 1.90817 1.51110 1.14345 1.84552 1.21524 0.97325 0.89954 0.93943 1.67987 1.08260 1.07110 1.29080 1.22994 0.94527 1.01071 0.85786 1.22220 1.03121 0.93297 0.91124 1.98392 1.86642 1.74986 1.41586 1.21404 0.96915 0.92447 0.99002 1.21898 1.01026 0.89404 0.94134 1.98429 1.90963 1.10143 1.98165 0.92116 0.92935 0.92864 0.93260 0.92833 0.95427 0.93707 0.98608 0.93926 0.74807 0.80711 0.82407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 37.16 0.35 -2.03 16 2 C 0.12 2.16 2.88 -67.93 -0.20 1.96 16 3 H 0.08 1.68 7.58 -51.93 -0.39 1.28 16 4 C 0.14 2.71 5.36 -4.04 -0.02 2.69 16 5 N -0.60 -14.21 2.82 -181.12 -0.51 -14.72 16 6 C 0.16 4.00 9.01 59.85 0.54 4.54 16 7 C -0.25 -6.43 8.02 -15.06 -0.12 -6.55 16 8 H 0.07 1.66 7.84 -52.49 -0.41 1.25 16 9 C 0.01 0.27 5.13 -17.43 -0.09 0.18 16 10 N -0.90 -25.66 10.58 55.49 0.59 -25.08 16 11 Si 0.89 21.27 29.57 -169.99 -5.03 16.24 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 N -0.66 -13.08 4.48 -54.70 -0.24 -13.33 16 16 C 0.56 11.41 7.77 -12.25 -0.10 11.31 16 17 O -0.53 -11.44 13.60 5.34 0.07 -11.37 16 18 C 0.11 2.03 6.75 -82.98 -0.56 1.47 16 19 N -0.41 -7.12 9.54 -9.75 -0.09 -7.21 16 20 C 0.12 1.63 10.98 -17.52 -0.19 1.44 16 21 C -0.07 -0.85 6.35 -39.22 -0.25 -1.09 16 22 Cl -0.04 -0.46 28.99 -51.86 -1.50 -1.97 16 23 C -0.07 -0.90 9.78 -39.24 -0.38 -1.28 16 24 C -0.03 -0.54 6.37 -38.94 -0.25 -0.78 16 25 Cl -0.01 -0.10 26.03 -51.86 -1.35 -1.45 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.05 0.89 8.03 -51.93 -0.42 0.48 16 30 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 31 H 0.03 0.74 7.42 -51.93 -0.39 0.36 16 32 H 0.04 1.17 7.19 -51.93 -0.37 0.80 16 33 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 34 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.41 8.40 6.72 -40.82 -0.27 8.12 16 36 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -29.76 344.15 -8.47 -38.22 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.32 Total: 3.61 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -1.26 Total: 11.86 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.26 Total: -60.34 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -2.85 Total: -3.42 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.76 -8.47 -38.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754328888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.704 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds