Wall clock time and date at job start Tue Mar 31 2020 17:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47283 * 2 1 4 4 C 1.52998 * 109.46928 * 239.99705 * 2 1 3 5 5 N 1.46504 * 109.47136 * 185.00419 * 4 2 1 6 6 C 1.46497 * 119.99587 * 269.99922 * 5 4 2 7 7 C 1.36938 * 120.00137 * 89.99697 * 5 4 2 8 8 H 1.08000 * 119.99693 * 22.36805 * 7 5 4 9 9 C 1.38805 * 119.99874 * 202.37018 * 7 5 4 10 10 N 1.31618 * 120.00336 * 11.22561 * 9 7 5 11 11 Si 1.86810 * 119.99782 * 191.22978 * 9 7 5 12 12 H 1.48503 * 109.47174 * 89.99881 * 11 9 7 13 13 H 1.48497 * 109.46952 * 209.99933 * 11 9 7 14 14 H 1.48499 * 109.47067 * 329.99743 * 11 9 7 15 15 N 1.46499 * 109.46855 * 119.99799 * 2 1 3 16 16 C 1.34777 * 120.00250 * 274.99668 * 15 2 1 17 17 O 1.21532 * 119.99579 * 0.02562 * 16 15 2 18 18 C 1.48019 * 120.00416 * 179.97438 * 16 15 2 19 19 N 1.32805 * 119.71975 * 359.73245 * 18 16 15 20 20 C 1.31427 * 121.66326 * 179.70502 * 19 18 16 21 21 C 1.38802 * 120.92129 * 0.56914 * 20 19 18 22 22 Cl 1.73597 * 120.33087 * 179.74524 * 21 20 19 23 23 C 1.38662 * 119.34658 * 359.72086 * 21 20 19 24 24 C 1.38737 * 118.46457 * 359.97438 * 23 21 20 25 25 Cl 1.73602 * 120.47455 * 179.97438 * 24 23 21 26 26 H 1.09001 * 109.46940 * 59.99955 * 1 2 3 27 27 H 1.09000 * 109.47788 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47355 * 300.00744 * 1 2 3 29 29 H 1.09006 * 109.47234 * 305.00042 * 4 2 1 30 30 H 1.09000 * 109.47582 * 65.00371 * 4 2 1 31 31 H 1.09000 * 109.46810 * 94.24406 * 6 5 4 32 32 H 1.08999 * 109.46639 * 214.23801 * 6 5 4 33 33 H 1.08997 * 109.47485 * 334.23896 * 6 5 4 34 34 H 0.97001 * 119.99699 * 180.02562 * 10 9 7 35 35 H 0.97004 * 120.00326 * 94.99871 * 15 2 1 36 36 H 1.07997 * 119.53780 * 180.28666 * 20 19 18 37 37 H 1.07999 * 120.76988 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8266 -1.1905 6 6 4.3343 0.2338 -1.7613 7 6 4.0849 -1.9160 -0.6022 8 1 3.5338 -2.8402 -0.5089 9 6 5.3859 -1.8326 -0.1257 10 7 5.9798 -0.6615 -0.0352 11 14 6.2940 -3.3825 0.3871 12 1 7.0217 -3.9394 -0.7815 13 1 7.2630 -3.0551 1.4637 14 1 5.3191 -4.3850 0.8868 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8576 1.1609 2.4118 18 6 2.6398 -0.7161 3.5659 19 7 2.9484 -2.0061 3.5016 20 6 3.3946 -2.6619 4.5495 21 6 3.5498 -2.0280 5.7746 22 17 4.1342 -2.9106 7.1505 23 6 3.2340 -0.6827 5.8885 24 6 2.7713 -0.0146 4.7640 25 17 2.3600 1.6699 4.8478 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3634 0.5140 0.8900 29 1 1.6053 -1.7199 -1.2951 30 1 1.7517 -0.1584 -2.1370 31 1 4.6025 0.9452 -0.9801 32 1 5.2402 -0.2032 -2.1813 33 1 3.7810 0.7483 -2.5469 34 1 6.8891 -0.6033 0.2975 35 1 2.2489 -1.6318 1.1527 36 1 3.6396 -3.7097 4.4573 37 1 3.3465 -0.1666 6.8305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754328888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:17 Heat of formation + Delta-G solvation = 3.384115 kcal Electronic energy + Delta-G solvation = -24447.907487 eV Core-core repulsion = 20698.666677 eV Total energy + Delta-G solvation = -3749.240810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83781 -40.17983 -38.10330 -37.81401 -37.66943 -35.69576 -33.90352 -33.08541 -32.45891 -31.22151 -28.00528 -27.33374 -26.09401 -24.96744 -23.58205 -22.33050 -21.23340 -19.44614 -18.59082 -18.43549 -17.88078 -16.89149 -16.80368 -16.45350 -16.28608 -15.60836 -15.42095 -15.18859 -14.83944 -14.59007 -14.44141 -14.07716 -13.81212 -13.51406 -13.26210 -13.06637 -12.99433 -12.89281 -12.73494 -12.62430 -12.49215 -12.31494 -12.10799 -11.92678 -11.90029 -11.64652 -11.27850 -10.86454 -10.56304 -10.47180 -10.17683 -9.74482 -8.72249 -7.73593 -5.20107 -0.83870 -0.28155 0.53735 0.98463 1.47384 1.49586 1.56896 1.60213 2.17292 2.56383 2.56979 3.00718 3.36787 3.42525 3.47095 3.67420 3.76603 3.80971 4.17706 4.35074 4.47203 4.54294 4.57711 4.79165 4.87814 4.92687 4.96348 5.03710 5.20712 5.37305 5.43161 5.70205 5.74522 5.78182 6.29909 6.39000 6.75346 7.22077 7.32046 7.94355 8.39344 9.29773 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.010218 B = 0.005611 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.646892 B = 4988.984418 C = 6747.618519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.119 3.881 3 H 0.047 0.953 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.180 3.820 7 C -0.238 4.238 8 H 0.077 0.923 9 C -0.044 4.044 10 N -0.935 5.935 11 Si 0.947 3.053 12 H -0.294 1.294 13 H -0.306 1.306 14 H -0.255 1.255 15 N -0.665 5.665 16 C 0.554 3.446 17 O -0.555 6.555 18 C 0.081 3.919 19 N -0.437 5.437 20 C 0.113 3.887 21 C -0.055 4.055 22 Cl -0.016 7.016 23 C -0.060 4.060 24 C -0.042 4.042 25 Cl -0.013 7.013 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.077 0.923 31 H -0.009 1.009 32 H 0.018 0.982 33 H 0.028 0.972 34 H 0.239 0.761 35 H 0.411 0.589 36 H 0.201 0.799 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.959 -3.582 11.792 15.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.065 0.935 4 C 0.014 3.986 5 N -0.334 5.334 6 C 0.035 3.965 7 C -0.369 4.369 8 H 0.095 0.905 9 C -0.239 4.239 10 N -0.583 5.583 11 Si 0.776 3.224 12 H -0.222 1.222 13 H -0.234 1.234 14 H -0.179 1.179 15 N -0.313 5.313 16 C 0.338 3.662 17 O -0.434 6.434 18 C -0.057 4.057 19 N -0.148 5.148 20 C -0.049 4.049 21 C -0.085 4.085 22 Cl 0.013 6.987 23 C -0.087 4.087 24 C -0.073 4.073 25 Cl 0.016 6.984 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.010 0.990 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.248 0.752 36 H 0.218 0.782 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.129 -3.063 11.107 14.700 hybrid contribution 1.440 -0.298 1.208 1.903 sum -7.689 -3.361 12.315 14.902 Atomic orbital electron populations 1.22023 0.93446 1.02639 1.02313 1.21847 0.94340 0.96434 0.86229 0.93457 1.21402 0.83254 0.99391 0.94520 1.44140 1.00873 1.22043 1.66387 1.20482 0.92733 0.89922 0.93363 1.19356 0.96843 0.90131 1.30522 0.90536 1.25582 0.99822 0.98067 1.00428 1.70270 1.12818 1.23393 1.51798 0.85548 0.78879 0.81010 0.76926 1.22198 1.23359 1.17853 1.45682 1.62837 1.14750 1.08067 1.17899 0.78677 0.86093 0.83569 1.90781 1.52216 1.15266 1.85165 1.21270 0.99787 0.90823 0.93851 1.67896 1.09272 1.06886 1.30774 1.23458 0.93715 1.02049 0.85660 1.22251 1.01430 0.93237 0.91594 1.98412 1.86062 1.74294 1.39895 1.21716 0.95253 0.92551 0.99132 1.22002 1.01575 0.89193 0.94496 1.98420 1.91106 1.10730 1.98152 0.89708 0.91292 0.93946 0.91543 0.90449 0.99037 0.96311 0.95339 0.95163 0.75167 0.78212 0.79307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.48 71.98 0.68 -3.40 16 2 C 0.12 4.35 2.88 44.99 0.13 4.48 16 3 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 4 C 0.14 5.14 5.36 86.38 0.46 5.61 16 5 N -0.61 -28.78 2.82 -726.94 -2.05 -30.83 16 6 C 0.18 8.89 9.01 127.77 1.15 10.04 16 7 C -0.24 -12.03 8.02 84.03 0.67 -11.35 16 8 H 0.08 3.68 7.84 -2.91 -0.02 3.66 16 9 C -0.04 -2.37 5.13 84.86 0.44 -1.93 16 10 N -0.94 -54.98 10.58 21.65 0.23 -54.75 16 11 Si 0.95 43.71 29.57 68.60 2.03 45.73 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 13 H -0.31 -14.68 7.11 99.48 0.71 -13.97 16 14 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 15 N -0.66 -26.44 4.48 -445.25 -1.99 -28.44 16 16 C 0.55 22.92 7.77 86.84 0.67 23.60 16 17 O -0.56 -24.67 13.60 -3.82 -0.05 -24.72 16 18 C 0.08 2.95 6.75 41.89 0.28 3.23 16 19 N -0.44 -14.77 9.54 -184.76 -1.76 -16.53 16 20 C 0.11 2.92 10.98 84.89 0.93 3.86 16 21 C -0.06 -1.24 6.35 22.51 0.14 -1.10 16 22 Cl -0.02 -0.27 28.99 -2.72 -0.08 -0.35 16 23 C -0.06 -1.40 9.78 22.49 0.22 -1.19 16 24 C -0.04 -1.31 6.37 22.68 0.14 -1.16 16 25 Cl -0.01 -0.42 26.03 -2.72 -0.07 -0.50 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.07 2.22 8.03 -2.38 -0.02 2.21 16 30 H 0.08 2.46 7.86 -2.39 -0.02 2.44 16 31 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 32 H 0.02 0.98 7.19 -2.39 -0.02 0.97 16 33 H 0.03 1.18 7.84 -2.39 -0.02 1.17 16 34 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 35 H 0.41 16.59 6.72 -92.71 -0.62 15.97 16 36 H 0.20 3.98 8.06 -2.91 -0.02 3.96 16 37 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -66.20 344.15 2.67 -63.52 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.49 Total: 16.20 kcal Atomic # 6 Polarization: 24.74 SS G_CDS: 5.93 Total: 30.67 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -5.58 Total: -130.55 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.15 Total: -0.85 kcal Total: -66.20 2.67 -63.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754328888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.907 kcal (2) G-P(sol) polarization free energy of solvation -66.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds