Wall clock time and date at job start Tue Mar 31 2020 17:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46994 * 2 1 4 4 C 1.52999 * 109.47226 * 119.99978 * 2 1 3 5 5 N 1.46497 * 109.47523 * 175.00420 * 4 2 1 6 6 C 1.46500 * 119.99781 * 270.00131 * 5 4 2 7 7 C 1.36930 * 120.00373 * 89.99300 * 5 4 2 8 8 H 1.08007 * 120.00259 * 23.63906 * 7 5 4 9 9 C 1.38811 * 120.00354 * 203.63283 * 7 5 4 10 10 N 1.31622 * 119.99747 * 11.29019 * 9 7 5 11 11 Si 1.86799 * 120.00468 * 191.28967 * 9 7 5 12 12 H 1.48496 * 109.47387 * 89.99788 * 11 9 7 13 13 H 1.48501 * 109.47456 * 210.00267 * 11 9 7 14 14 H 1.48510 * 109.46943 * 330.00118 * 11 9 7 15 15 N 1.46507 * 109.47232 * 239.99726 * 2 1 3 16 16 C 1.34775 * 119.99802 * 85.00305 * 15 2 1 17 17 O 1.21532 * 120.00126 * 359.97438 * 16 15 2 18 18 C 1.48014 * 119.99814 * 180.02562 * 16 15 2 19 19 N 1.32799 * 119.72427 * 359.72262 * 18 16 15 20 20 C 1.31431 * 121.66961 * 179.71240 * 19 18 16 21 21 C 1.38804 * 120.91616 * 0.56405 * 20 19 18 22 22 Cl 1.73601 * 120.32695 * 179.74476 * 21 20 19 23 23 C 1.38657 * 119.34867 * 359.72966 * 21 20 19 24 24 C 1.38739 * 118.46640 * 359.97438 * 23 21 20 25 25 Cl 1.73601 * 120.47870 * 179.97438 * 24 23 21 26 26 H 1.09005 * 109.47020 * 60.00442 * 1 2 3 27 27 H 1.09003 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47132 * 300.00424 * 1 2 3 29 29 H 1.09005 * 109.46720 * 295.00293 * 4 2 1 30 30 H 1.08997 * 109.47442 * 54.99382 * 4 2 1 31 31 H 1.08999 * 109.47446 * 94.55214 * 6 5 4 32 32 H 1.08999 * 109.46978 * 214.55988 * 6 5 4 33 33 H 1.09003 * 109.46957 * 334.55257 * 6 5 4 34 34 H 0.97007 * 119.99835 * 179.97438 * 10 9 7 35 35 H 0.97003 * 119.99497 * 264.99857 * 15 2 1 36 36 H 1.08003 * 119.54252 * 180.29068 * 20 19 18 37 37 H 1.08000 * 120.77015 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5613 7 6 4.2798 0.1649 1.7240 8 1 3.8834 0.8070 2.4968 9 6 5.5798 0.3445 1.2717 10 7 5.9917 -0.2794 0.1884 11 14 6.7446 1.4716 2.2002 12 1 7.4751 0.6892 3.2295 13 1 7.7170 2.0696 1.2505 14 1 5.9676 2.5522 2.8591 15 7 2.0184 -0.6907 -1.1962 16 6 2.1471 -0.0183 -2.3571 17 8 1.8577 1.1607 -2.4119 18 6 2.6400 -0.7163 -3.5658 19 7 2.9590 -2.0036 -3.4987 20 6 3.3949 -2.6622 -4.5492 21 6 3.5502 -2.0284 -5.7743 22 17 4.1335 -2.9115 -7.1504 23 6 3.2344 -0.6831 -5.8883 24 6 2.7707 -0.0151 -4.7642 25 17 2.3606 1.6697 -4.8478 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.7516 -0.1582 2.1370 30 1 1.6054 -1.7197 1.2953 31 1 4.3536 -1.7640 -0.4800 32 1 5.0469 -2.2390 1.0892 33 1 3.4425 -2.8399 0.6066 34 1 6.9001 -0.1536 -0.1279 35 1 2.2491 -1.6319 -1.1525 36 1 3.6400 -3.7100 -4.4569 37 1 3.3461 -0.1673 -6.8306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754328892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:21 Heat of formation + Delta-G solvation = 21.613514 kcal Electronic energy + Delta-G solvation = -24190.639616 eV Core-core repulsion = 20442.189292 eV Total energy + Delta-G solvation = -3748.450324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.70832 -38.83305 -37.02514 -36.61202 -36.24541 -34.01712 -32.79577 -31.57008 -30.92529 -29.92040 -26.12691 -25.60134 -24.91047 -23.91308 -21.95639 -20.72567 -19.90050 -18.11215 -17.38074 -16.86534 -16.66206 -15.41933 -15.32037 -15.15657 -14.78979 -14.25240 -13.97419 -13.60190 -13.53227 -13.20753 -12.96371 -12.81801 -12.43570 -12.10761 -11.97757 -11.89605 -11.72407 -11.40795 -11.26019 -10.97234 -10.81738 -10.75370 -10.51309 -10.23169 -10.12609 -9.91696 -9.85991 -9.82441 -9.16016 -9.05759 -8.56325 -8.32710 -6.70893 -5.69038 -3.15700 0.26306 0.72356 1.51321 2.06475 2.81378 3.40823 3.42782 3.47528 3.48553 3.82374 4.08312 4.31835 4.52228 4.56150 4.72449 4.86502 5.35571 5.41228 5.50346 5.52633 5.71202 5.86707 5.96692 6.02613 6.13582 6.27120 6.49775 6.55779 6.71604 6.89390 7.14474 7.37320 7.38267 7.75650 7.84243 8.11071 8.42656 8.71523 9.26520 9.88989 10.37469 11.35504 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.004134 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.706325 B = 6772.033818 C = 7341.649139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 H 0.088 0.912 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.256 4.256 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.903 5.903 11 Si 0.902 3.098 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.672 5.672 16 C 0.565 3.435 17 O -0.521 6.521 18 C 0.110 3.890 19 N -0.420 5.420 20 C 0.118 3.882 21 C -0.067 4.067 22 Cl -0.043 7.043 23 C -0.070 4.070 24 C -0.032 4.032 25 Cl -0.004 7.004 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.035 0.965 32 H 0.041 0.959 33 H -0.005 1.005 34 H 0.250 0.750 35 H 0.405 0.595 36 H 0.177 0.823 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 -5.739 -13.128 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 H 0.106 0.894 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.386 4.386 8 H 0.086 0.914 9 C -0.192 4.192 10 N -0.547 5.547 11 Si 0.733 3.267 12 H -0.216 1.216 13 H -0.219 1.219 14 H -0.205 1.205 15 N -0.321 5.321 16 C 0.347 3.653 17 O -0.397 6.397 18 C -0.030 4.030 19 N -0.131 5.131 20 C -0.043 4.043 21 C -0.096 4.096 22 Cl -0.014 7.014 23 C -0.097 4.097 24 C -0.063 4.063 25 Cl 0.026 6.974 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.013 0.987 34 H 0.060 0.940 35 H 0.241 0.759 36 H 0.194 0.806 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.336 -5.225 -12.487 15.897 hybrid contribution 1.214 0.641 -0.703 1.542 sum -7.122 -4.584 -13.190 15.675 Atomic orbital electron populations 1.22153 0.96657 1.01201 1.01785 1.21984 0.91801 0.99289 0.86146 0.89361 1.21198 0.85897 0.97259 0.94185 1.43894 0.99009 1.20914 1.68118 1.20852 0.94420 0.84984 0.98023 1.19172 0.94591 1.10597 1.14222 0.91445 1.25014 0.98884 0.99027 0.96306 1.70055 1.17070 1.45619 1.21992 0.86289 0.81016 0.80503 0.78915 1.21592 1.21864 1.20503 1.45650 1.63800 1.14299 1.08382 1.17465 0.79024 0.86171 0.82604 1.90840 1.50312 1.14205 1.84328 1.21509 0.97463 0.90013 0.93977 1.67927 1.08638 1.07111 1.29447 1.22968 0.94619 1.00970 0.85729 1.22214 1.02956 0.93260 0.91202 1.98398 1.86615 1.74892 1.41521 1.21432 0.96711 0.92509 0.99027 1.21905 1.00740 0.89541 0.94114 1.98440 1.90939 1.09905 1.98157 0.92901 0.93123 0.91940 0.92180 0.93957 0.94687 0.94047 0.98697 0.93966 0.75867 0.80567 0.82340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 37.16 0.35 -2.02 16 2 C 0.12 2.16 2.88 -67.93 -0.20 1.96 16 3 H 0.09 1.97 7.58 -51.93 -0.39 1.58 16 4 C 0.14 2.77 5.33 -4.04 -0.02 2.75 16 5 N -0.60 -14.41 2.78 -181.12 -0.50 -14.91 16 6 C 0.16 3.82 7.61 59.85 0.46 4.27 16 7 C -0.26 -6.95 9.66 -15.06 -0.15 -7.09 16 8 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 9 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 10 N -0.90 -26.14 10.66 55.49 0.59 -25.55 16 11 Si 0.90 22.18 29.57 -169.99 -5.03 17.15 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 N -0.67 -12.71 4.40 -54.69 -0.24 -12.95 16 16 C 0.56 11.08 7.77 -12.25 -0.10 10.98 16 17 O -0.52 -11.18 13.60 5.34 0.07 -11.10 16 18 C 0.11 1.87 6.75 -82.99 -0.56 1.31 16 19 N -0.42 -6.44 9.54 -9.75 -0.09 -6.54 16 20 C 0.12 1.42 10.98 -17.51 -0.19 1.23 16 21 C -0.07 -0.74 6.35 -39.22 -0.25 -0.99 16 22 Cl -0.04 -0.39 28.99 -51.86 -1.50 -1.90 16 23 C -0.07 -0.82 9.78 -39.24 -0.38 -1.20 16 24 C -0.03 -0.48 6.37 -38.94 -0.25 -0.73 16 25 Cl 0.00 -0.06 26.03 -51.86 -1.35 -1.41 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 30 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 31 H 0.03 0.89 6.90 -51.93 -0.36 0.53 16 32 H 0.04 1.07 7.30 -51.93 -0.38 0.69 16 33 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.41 7.42 6.50 -40.82 -0.27 7.15 16 36 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -30.97 343.69 -8.54 -39.50 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.29 Total: 1.98 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -1.37 Total: 10.55 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.25 Total: -59.95 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -2.85 Total: -3.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.97 -8.54 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754328892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.116 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds