Wall clock time and date at job start Tue Mar 31 2020 17:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46994 * 2 1 4 4 C 1.52999 * 109.47226 * 119.99978 * 2 1 3 5 5 N 1.46497 * 109.47523 * 175.00420 * 4 2 1 6 6 C 1.46500 * 119.99781 * 270.00131 * 5 4 2 7 7 C 1.36930 * 120.00373 * 89.99300 * 5 4 2 8 8 H 1.08007 * 120.00259 * 23.63906 * 7 5 4 9 9 C 1.38811 * 120.00354 * 203.63283 * 7 5 4 10 10 N 1.31622 * 119.99747 * 11.29019 * 9 7 5 11 11 Si 1.86799 * 120.00468 * 191.28967 * 9 7 5 12 12 H 1.48496 * 109.47387 * 89.99788 * 11 9 7 13 13 H 1.48501 * 109.47456 * 210.00267 * 11 9 7 14 14 H 1.48510 * 109.46943 * 330.00118 * 11 9 7 15 15 N 1.46507 * 109.47232 * 239.99726 * 2 1 3 16 16 C 1.34775 * 119.99802 * 85.00305 * 15 2 1 17 17 O 1.21532 * 120.00126 * 359.97438 * 16 15 2 18 18 C 1.48014 * 119.99814 * 180.02562 * 16 15 2 19 19 N 1.32799 * 119.72427 * 359.72262 * 18 16 15 20 20 C 1.31431 * 121.66961 * 179.71240 * 19 18 16 21 21 C 1.38804 * 120.91616 * 0.56405 * 20 19 18 22 22 Cl 1.73601 * 120.32695 * 179.74476 * 21 20 19 23 23 C 1.38657 * 119.34867 * 359.72966 * 21 20 19 24 24 C 1.38739 * 118.46640 * 359.97438 * 23 21 20 25 25 Cl 1.73601 * 120.47870 * 179.97438 * 24 23 21 26 26 H 1.09005 * 109.47020 * 60.00442 * 1 2 3 27 27 H 1.09003 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47132 * 300.00424 * 1 2 3 29 29 H 1.09005 * 109.46720 * 295.00293 * 4 2 1 30 30 H 1.08997 * 109.47442 * 54.99382 * 4 2 1 31 31 H 1.08999 * 109.47446 * 94.55214 * 6 5 4 32 32 H 1.08999 * 109.46978 * 214.55988 * 6 5 4 33 33 H 1.09003 * 109.46957 * 334.55257 * 6 5 4 34 34 H 0.97007 * 119.99835 * 179.97438 * 10 9 7 35 35 H 0.97003 * 119.99497 * 264.99857 * 15 2 1 36 36 H 1.08003 * 119.54252 * 180.29068 * 20 19 18 37 37 H 1.08000 * 120.77015 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5613 7 6 4.2798 0.1649 1.7240 8 1 3.8834 0.8070 2.4968 9 6 5.5798 0.3445 1.2717 10 7 5.9917 -0.2794 0.1884 11 14 6.7446 1.4716 2.2002 12 1 7.4751 0.6892 3.2295 13 1 7.7170 2.0696 1.2505 14 1 5.9676 2.5522 2.8591 15 7 2.0184 -0.6907 -1.1962 16 6 2.1471 -0.0183 -2.3571 17 8 1.8577 1.1607 -2.4119 18 6 2.6400 -0.7163 -3.5658 19 7 2.9590 -2.0036 -3.4987 20 6 3.3949 -2.6622 -4.5492 21 6 3.5502 -2.0284 -5.7743 22 17 4.1335 -2.9115 -7.1504 23 6 3.2344 -0.6831 -5.8883 24 6 2.7707 -0.0151 -4.7642 25 17 2.3606 1.6697 -4.8478 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.7516 -0.1582 2.1370 30 1 1.6054 -1.7197 1.2953 31 1 4.3536 -1.7640 -0.4800 32 1 5.0469 -2.2390 1.0892 33 1 3.4425 -2.8399 0.6066 34 1 6.9001 -0.1536 -0.1279 35 1 2.2491 -1.6319 -1.1525 36 1 3.6400 -3.7100 -4.4569 37 1 3.3461 -0.1673 -6.8306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754328892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:21 Heat of formation + Delta-G solvation = 2.374146 kcal Electronic energy + Delta-G solvation = -24191.473898 eV Core-core repulsion = 20442.189292 eV Total energy + Delta-G solvation = -3749.284606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.85288 -40.21876 -38.11627 -37.80813 -37.66824 -35.74850 -33.89946 -33.05590 -32.49120 -31.33680 -27.94502 -27.38479 -26.10677 -24.95942 -23.58607 -22.28860 -21.40181 -19.37595 -18.76790 -18.41790 -17.87839 -16.94251 -16.78797 -16.49170 -16.26368 -15.60955 -15.48976 -15.11966 -15.01263 -14.58483 -14.45843 -14.04915 -13.72845 -13.52858 -13.32215 -13.07186 -12.98336 -12.88211 -12.72354 -12.57973 -12.51222 -12.28714 -12.26136 -12.02375 -11.80569 -11.68629 -11.29472 -10.85532 -10.62465 -10.50271 -10.18040 -9.82590 -8.69236 -7.78956 -5.25863 -0.84138 -0.27452 0.55774 0.99654 1.44637 1.45597 1.53181 1.58873 2.12083 2.52238 2.54673 2.98406 3.34647 3.38176 3.46489 3.66537 3.75190 3.80988 4.19013 4.35626 4.44743 4.54432 4.57144 4.79945 4.87626 4.93046 4.96878 5.03410 5.21136 5.38924 5.41178 5.68138 5.69292 5.84106 6.27518 6.36810 6.67118 7.20443 7.26185 7.92540 8.34145 9.22830 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.004134 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.706325 B = 6772.033818 C = 7341.649139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.120 3.880 3 H 0.044 0.956 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.178 3.822 7 C -0.259 4.259 8 H 0.068 0.932 9 C -0.048 4.048 10 N -0.928 5.928 11 Si 0.958 3.042 12 H -0.284 1.284 13 H -0.302 1.302 14 H -0.272 1.272 15 N -0.672 5.672 16 C 0.554 3.446 17 O -0.551 6.551 18 C 0.080 3.920 19 N -0.438 5.438 20 C 0.119 3.881 21 C -0.054 4.054 22 Cl -0.015 7.015 23 C -0.061 4.061 24 C -0.042 4.042 25 Cl -0.017 7.017 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.012 0.988 32 H 0.009 0.991 33 H 0.032 0.968 34 H 0.242 0.758 35 H 0.408 0.592 36 H 0.209 0.791 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 -7.204 -13.836 17.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.062 0.938 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.033 3.967 7 C -0.390 4.390 8 H 0.086 0.914 9 C -0.243 4.243 10 N -0.575 5.575 11 Si 0.788 3.212 12 H -0.211 1.211 13 H -0.229 1.229 14 H -0.197 1.197 15 N -0.321 5.321 16 C 0.339 3.661 17 O -0.430 6.430 18 C -0.058 4.058 19 N -0.149 5.149 20 C -0.042 4.042 21 C -0.084 4.084 22 Cl 0.014 6.986 23 C -0.088 4.088 24 C -0.073 4.073 25 Cl 0.012 6.988 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.031 0.969 32 H 0.028 0.972 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.245 0.755 36 H 0.225 0.775 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.019 -6.699 -13.174 17.314 hybrid contribution 1.400 0.976 -0.569 1.800 sum -7.619 -5.723 -13.743 16.723 Atomic orbital electron populations 1.22017 0.93358 1.02806 1.02180 1.21803 0.94260 0.96678 0.85948 0.93762 1.21382 0.83261 0.99221 0.94608 1.44086 1.00887 1.20449 1.67929 1.20581 0.94019 0.86031 0.96047 1.19479 0.95045 1.10587 1.13856 0.91391 1.25673 1.00460 1.00871 0.97318 1.70220 1.16699 1.47218 1.23354 0.85400 0.79085 0.79111 0.77645 1.21097 1.22872 1.19701 1.45669 1.63794 1.14331 1.08354 1.17949 0.78544 0.86103 0.83551 1.90802 1.51689 1.15438 1.85051 1.21179 1.00031 0.91066 0.93568 1.67859 1.09453 1.06528 1.31048 1.23517 0.93303 1.02091 0.85299 1.22268 1.01236 0.93062 0.91806 1.98419 1.86040 1.74167 1.39939 1.21718 0.95236 0.92785 0.99017 1.22008 1.01601 0.89063 0.94644 1.98427 1.91175 1.11006 1.98167 0.93950 0.90817 0.90104 0.91377 0.90816 0.96943 0.97204 0.94977 0.94877 0.75545 0.77475 0.79518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 9.48 71.98 0.68 -3.44 16 2 C 0.12 4.49 2.88 44.99 0.13 4.62 16 3 H 0.04 2.04 7.58 -2.39 -0.02 2.03 16 4 C 0.14 5.31 5.33 86.38 0.46 5.77 16 5 N -0.61 -29.31 2.78 -726.94 -2.02 -31.33 16 6 C 0.18 8.37 7.61 127.77 0.97 9.35 16 7 C -0.26 -14.13 9.66 84.03 0.81 -13.32 16 8 H 0.07 3.63 7.85 -2.91 -0.02 3.60 16 9 C -0.05 -2.70 5.13 84.86 0.44 -2.26 16 10 N -0.93 -55.04 10.66 21.65 0.23 -54.81 16 11 Si 0.96 46.25 29.57 68.60 2.03 48.28 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 14 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 15 N -0.67 -25.62 4.40 -445.24 -1.96 -27.58 16 16 C 0.55 22.36 7.77 86.84 0.67 23.03 16 17 O -0.55 -24.66 13.60 -3.82 -0.05 -24.71 16 18 C 0.08 2.73 6.75 41.89 0.28 3.01 16 19 N -0.44 -13.14 9.54 -184.75 -1.76 -14.90 16 20 C 0.12 2.63 10.98 84.89 0.93 3.56 16 21 C -0.05 -1.07 6.35 22.51 0.14 -0.92 16 22 Cl -0.01 -0.22 28.99 -2.72 -0.08 -0.30 16 23 C -0.06 -1.33 9.78 22.49 0.22 -1.11 16 24 C -0.04 -1.26 6.37 22.68 0.14 -1.12 16 25 Cl -0.02 -0.54 26.03 -2.72 -0.07 -0.61 16 26 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 2.44 8.03 -2.38 -0.02 2.42 16 30 H 0.07 2.31 7.86 -2.39 -0.02 2.29 16 31 H 0.01 0.64 6.90 -2.39 -0.02 0.62 16 32 H 0.01 0.49 7.30 -2.39 -0.02 0.47 16 33 H 0.03 1.24 7.84 -2.39 -0.02 1.22 16 34 H 0.24 14.21 8.31 -92.70 -0.77 13.44 16 35 H 0.41 14.81 6.50 -92.71 -0.60 14.21 16 36 H 0.21 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -69.08 343.69 2.72 -66.37 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.51 Total: 12.43 kcal Atomic # 6 Polarization: 21.29 SS G_CDS: 5.89 Total: 27.17 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -5.51 Total: -128.63 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.05 Total: -24.71 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.15 Total: -0.91 kcal Total: -69.08 2.72 -66.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754328892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.741 kcal (2) G-P(sol) polarization free energy of solvation -69.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds