Wall clock time and date at job start Tue Mar 31 2020 16:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99805 * 2 1 4 4 H 1.48504 * 109.46922 * 269.99875 * 3 2 1 5 5 H 1.48496 * 109.47119 * 30.00128 * 3 2 1 6 6 H 1.48499 * 109.47091 * 150.00122 * 3 2 1 7 7 C 1.38809 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99965 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00179 * 180.02562 * 7 2 1 10 10 C 1.46495 * 119.99940 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47248 * 179.97438 * 10 9 7 12 12 C 1.53776 * 113.61910 * 184.99697 * 11 10 9 13 13 C 1.53780 * 87.08372 * 220.02059 * 12 11 10 14 14 N 1.46498 * 113.61295 * 139.98093 * 13 12 11 15 15 C 1.34777 * 119.99934 * 156.52906 * 14 13 12 16 16 O 1.21711 * 120.00182 * 0.02562 * 15 14 13 17 17 C 1.46548 * 119.99891 * 180.02562 * 15 14 13 18 18 C 1.37965 * 126.21942 * 180.34369 * 17 15 14 19 19 C 1.39794 * 107.12650 * 180.13270 * 18 17 15 20 20 Cl 1.73599 * 126.06513 * 179.83981 * 19 18 17 21 21 C 1.35725 * 107.87482 * 359.57362 * 19 18 17 22 22 Cl 1.73602 * 125.58654 * 180.29995 * 21 19 18 23 23 N 1.35670 * 108.83064 * 0.26254 * 21 19 18 24 24 H 0.97001 * 125.69473 * 179.97438 * 23 21 19 25 25 C 1.53776 * 87.17247 * 25.39208 * 13 12 11 26 26 H 0.97000 * 119.99600 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99951 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47533 * 59.99930 * 10 9 7 29 29 H 1.09001 * 109.47554 * 299.99497 * 10 9 7 30 30 H 1.09000 * 112.85272 * 316.20242 * 11 10 9 31 31 H 1.09000 * 113.61639 * 105.47042 * 12 11 10 32 32 H 1.08999 * 113.69170 * 334.58472 * 12 11 10 33 33 H 1.08993 * 113.61706 * 270.79984 * 13 12 11 34 34 H 0.97000 * 120.00356 * 336.52636 * 14 13 12 35 35 H 1.08002 * 126.44084 * 359.97438 * 18 17 15 36 36 H 1.09003 * 113.61567 * 89.15744 * 25 13 12 37 37 H 1.09002 * 113.61398 * 220.06484 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0011 12 6 6.4786 -3.4586 -0.1217 13 6 7.4242 -2.8203 0.9095 14 7 7.9453 -3.7706 1.8951 15 6 9.0994 -3.5080 2.5398 16 8 9.7084 -2.4811 2.3035 17 6 9.6209 -4.4590 3.5253 18 6 10.7795 -4.3174 4.2610 19 6 10.8945 -5.4516 5.0701 20 17 12.1781 -5.7811 6.1915 21 6 9.8215 -6.2467 4.8278 22 17 9.5011 -7.7719 5.5927 23 7 9.0400 -5.6540 3.8905 24 1 8.2109 -6.0119 3.5363 25 6 6.2125 -2.0163 1.4098 26 1 -0.4849 0.8401 0.0004 27 1 3.8647 -0.3620 0.0014 28 1 3.8492 -3.0422 -0.8891 29 1 3.8486 -3.0426 0.8908 30 1 5.9002 -1.4011 -0.6941 31 1 6.9287 -3.5869 -1.1061 32 1 5.9846 -4.3609 0.2387 33 1 8.2038 -2.2028 0.4636 34 1 7.4598 -4.5889 2.0837 35 1 11.4694 -3.4876 4.2178 36 1 5.6445 -2.5228 2.1902 37 1 6.4480 -0.9819 1.6599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755215523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:19 Heat of formation + Delta-G solvation = 29.428135 kcal Electronic energy + Delta-G solvation = -22366.292732 eV Core-core repulsion = 18618.181275 eV Total energy + Delta-G solvation = -3748.111457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.04604 -40.09074 -38.42927 -37.35990 -36.91823 -34.88054 -33.62991 -31.70984 -31.23185 -29.75382 -27.24862 -25.74089 -24.25784 -22.66565 -21.61752 -21.10010 -20.83225 -20.22165 -19.11307 -17.61449 -16.83931 -16.32315 -15.99952 -15.43356 -15.27140 -14.80617 -14.61982 -14.45522 -14.13422 -13.82260 -13.69018 -13.46100 -12.74662 -12.49291 -12.42293 -12.36514 -12.09680 -11.96839 -11.92066 -11.63083 -11.36882 -11.06988 -10.88667 -10.45817 -10.37872 -10.24761 -10.04886 -9.61486 -9.58464 -9.34703 -8.91239 -8.78474 -7.25322 -5.79365 -3.14888 0.65691 0.89192 1.60814 1.68374 2.54369 2.81198 2.84460 3.36511 3.39543 3.44422 4.20763 4.31037 4.46050 4.54612 4.57822 4.79123 4.82471 4.87109 5.08553 5.42666 5.51977 5.58140 5.63572 5.69811 5.74201 5.79377 5.85168 5.95697 6.02660 6.12033 6.31460 6.39818 6.61102 6.71709 7.06886 7.73019 7.96556 8.39837 9.19153 9.91667 10.11460 11.39001 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.021990 B = 0.002030 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.995796 B =13787.901095 C =14211.457264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.170 3.830 11 C -0.116 4.116 12 C -0.135 4.135 13 C 0.119 3.881 14 N -0.714 5.714 15 C 0.590 3.410 16 O -0.517 6.517 17 C -0.016 4.016 18 C -0.086 4.086 19 C -0.099 4.099 20 Cl -0.026 7.026 21 C 0.099 3.901 22 Cl 0.006 6.994 23 N -0.522 5.522 24 H 0.428 0.572 25 C -0.141 4.141 26 H 0.260 0.740 27 H 0.361 0.639 28 H 0.028 0.972 29 H 0.026 0.974 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.395 0.605 35 H 0.169 0.831 36 H 0.086 0.914 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.649 -16.550 9.642 31.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.043 3.957 11 C -0.135 4.135 12 C -0.174 4.174 13 C 0.015 3.985 14 N -0.364 5.364 15 C 0.376 3.624 16 O -0.392 6.392 17 C -0.130 4.130 18 C -0.112 4.112 19 C -0.134 4.134 20 Cl 0.002 6.998 21 C -0.045 4.045 22 Cl 0.035 6.965 23 N -0.123 5.123 24 H 0.268 0.732 25 C -0.180 4.180 26 H 0.070 0.930 27 H 0.194 0.806 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.228 0.772 35 H 0.186 0.814 36 H 0.105 0.895 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 24.780 -16.067 9.533 31.034 hybrid contribution -0.183 0.335 0.195 0.429 sum 24.597 -15.732 9.728 30.776 Atomic orbital electron populations 1.69705 1.05128 1.25866 1.57533 1.24689 0.95265 0.97295 1.01996 0.86533 0.79249 0.84861 0.77810 1.21046 1.21726 1.20244 1.19051 0.80695 0.94694 1.43101 0.89313 1.42699 1.04002 1.02274 1.91115 1.20569 0.87381 0.89336 0.98442 1.22623 0.96354 0.97433 0.97068 1.23324 0.96600 0.98517 0.98965 1.22771 0.95131 0.91422 0.89144 1.45949 1.23693 1.24485 1.42291 1.16838 0.80890 0.84848 0.79806 1.90899 1.58648 1.25375 1.64306 1.20525 0.98209 0.88887 1.05360 1.21186 0.96758 0.98078 0.95172 1.19635 0.93887 0.97539 1.02351 1.98361 1.47205 1.95067 1.59143 1.20612 0.94630 0.91577 0.97729 1.98442 1.95333 1.24660 1.78072 1.41892 1.21543 1.17039 1.31855 0.73202 1.23534 0.95662 1.00992 0.97826 0.93045 0.80605 0.95427 0.95625 0.88793 0.90594 0.89510 0.86460 0.77154 0.81352 0.89508 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.31 13.97 55.49 0.78 -28.53 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 22.08 27.74 -169.99 -4.71 17.36 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 7 C -0.25 -6.90 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.76 -17.58 5.41 -59.91 -0.32 -17.90 16 10 C 0.17 3.05 6.10 -4.04 -0.02 3.03 16 11 C -0.12 -1.56 3.75 -89.71 -0.34 -1.89 16 12 C -0.14 -1.32 7.39 -25.92 -0.19 -1.51 16 13 C 0.12 1.23 4.21 -67.12 -0.28 0.94 16 14 N -0.71 -6.07 5.36 -54.37 -0.29 -6.36 16 15 C 0.59 6.18 7.78 -12.91 -0.10 6.08 16 16 O -0.52 -7.35 16.50 5.18 0.09 -7.26 16 17 C -0.02 -0.14 7.06 -81.93 -0.58 -0.72 16 18 C -0.09 -0.77 10.64 -39.10 -0.42 -1.18 16 19 C -0.10 -0.84 6.66 -39.90 -0.27 -1.11 16 20 Cl -0.03 -0.21 29.12 -51.86 -1.51 -1.72 16 21 C 0.10 0.73 7.75 -16.75 -0.13 0.60 16 22 Cl 0.01 0.04 29.13 -51.86 -1.51 -1.47 16 23 N -0.52 -3.24 6.01 -6.51 -0.04 -3.28 16 24 H 0.43 1.42 8.19 -40.82 -0.33 1.08 16 25 C -0.14 -1.78 7.45 -25.83 -0.19 -1.98 16 26 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 27 H 0.36 8.24 5.53 -40.82 -0.23 8.02 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.03 0.47 7.85 -51.93 -0.41 0.06 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.12 1.33 7.50 -51.93 -0.39 0.94 16 34 H 0.39 2.18 7.84 -40.82 -0.32 1.86 16 35 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -33.74 348.59 -9.26 -43.00 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.21 Total: 5.71 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.77 Total: -4.80 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.12 Total: -56.08 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.09 Total: -7.26 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.36 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -3.02 Total: -3.19 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.74 -9.26 -43.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755215523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.428 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds