Wall clock time and date at job start Tue Mar 31 2020 16:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99805 * 2 1 4 4 H 1.48504 * 109.46922 * 269.99875 * 3 2 1 5 5 H 1.48496 * 109.47119 * 30.00128 * 3 2 1 6 6 H 1.48499 * 109.47091 * 150.00122 * 3 2 1 7 7 C 1.38809 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99965 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00179 * 180.02562 * 7 2 1 10 10 C 1.46495 * 119.99940 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47248 * 179.97438 * 10 9 7 12 12 C 1.53776 * 113.61910 * 184.99697 * 11 10 9 13 13 C 1.53780 * 87.08372 * 220.02059 * 12 11 10 14 14 N 1.46498 * 113.61295 * 139.98093 * 13 12 11 15 15 C 1.34777 * 119.99934 * 156.52906 * 14 13 12 16 16 O 1.21711 * 120.00182 * 0.02562 * 15 14 13 17 17 C 1.46548 * 119.99891 * 180.02562 * 15 14 13 18 18 C 1.37965 * 126.21942 * 180.34369 * 17 15 14 19 19 C 1.39794 * 107.12650 * 180.13270 * 18 17 15 20 20 Cl 1.73599 * 126.06513 * 179.83981 * 19 18 17 21 21 C 1.35725 * 107.87482 * 359.57362 * 19 18 17 22 22 Cl 1.73602 * 125.58654 * 180.29995 * 21 19 18 23 23 N 1.35670 * 108.83064 * 0.26254 * 21 19 18 24 24 H 0.97001 * 125.69473 * 179.97438 * 23 21 19 25 25 C 1.53776 * 87.17247 * 25.39208 * 13 12 11 26 26 H 0.97000 * 119.99600 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99951 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47533 * 59.99930 * 10 9 7 29 29 H 1.09001 * 109.47554 * 299.99497 * 10 9 7 30 30 H 1.09000 * 112.85272 * 316.20242 * 11 10 9 31 31 H 1.09000 * 113.61639 * 105.47042 * 12 11 10 32 32 H 1.08999 * 113.69170 * 334.58472 * 12 11 10 33 33 H 1.08993 * 113.61706 * 270.79984 * 13 12 11 34 34 H 0.97000 * 120.00356 * 336.52636 * 14 13 12 35 35 H 1.08002 * 126.44084 * 359.97438 * 18 17 15 36 36 H 1.09003 * 113.61567 * 89.15744 * 25 13 12 37 37 H 1.09002 * 113.61398 * 220.06484 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0011 12 6 6.4786 -3.4586 -0.1217 13 6 7.4242 -2.8203 0.9095 14 7 7.9453 -3.7706 1.8951 15 6 9.0994 -3.5080 2.5398 16 8 9.7084 -2.4811 2.3035 17 6 9.6209 -4.4590 3.5253 18 6 10.7795 -4.3174 4.2610 19 6 10.8945 -5.4516 5.0701 20 17 12.1781 -5.7811 6.1915 21 6 9.8215 -6.2467 4.8278 22 17 9.5011 -7.7719 5.5927 23 7 9.0400 -5.6540 3.8905 24 1 8.2109 -6.0119 3.5363 25 6 6.2125 -2.0163 1.4098 26 1 -0.4849 0.8401 0.0004 27 1 3.8647 -0.3620 0.0014 28 1 3.8492 -3.0422 -0.8891 29 1 3.8486 -3.0426 0.8908 30 1 5.9002 -1.4011 -0.6941 31 1 6.9287 -3.5869 -1.1061 32 1 5.9846 -4.3609 0.2387 33 1 8.2038 -2.2028 0.4636 34 1 7.4598 -4.5889 2.0837 35 1 11.4694 -3.4876 4.2178 36 1 5.6445 -2.5228 2.1902 37 1 6.4480 -0.9819 1.6599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755215523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:18 Heat of formation + Delta-G solvation = 5.988540 kcal Electronic energy + Delta-G solvation = -22367.309149 eV Core-core repulsion = 18618.181275 eV Total energy + Delta-G solvation = -3749.127874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.68506 -40.96344 -39.39072 -37.92434 -37.53570 -36.50948 -34.79152 -33.25751 -32.29685 -30.50875 -28.72650 -26.65279 -25.40562 -24.08684 -22.70279 -21.89332 -21.60511 -21.12701 -20.07284 -19.43763 -17.59338 -17.27967 -16.71936 -16.66020 -16.20019 -15.96008 -15.67113 -15.59489 -15.16435 -14.88046 -14.76215 -14.57455 -14.44074 -13.68929 -13.37890 -13.22114 -13.03234 -13.01567 -12.89766 -12.77365 -12.51060 -12.22278 -12.04364 -11.99035 -11.86284 -11.47003 -11.39138 -11.23931 -10.91598 -10.25576 -10.13824 -9.41526 -9.27745 -8.03589 -5.36194 -0.01165 0.30194 1.00887 1.02655 1.37916 1.40578 1.48070 1.85542 2.07764 2.19486 2.47796 3.27589 3.47484 3.51485 3.61408 3.71270 3.82932 3.89130 4.07826 4.17362 4.43995 4.52126 4.62281 4.80190 4.86229 4.93982 4.96748 5.00862 5.05511 5.18953 5.21262 5.35337 5.58650 5.75822 5.86097 6.21111 6.37034 6.97932 7.08391 7.86333 8.03785 9.17941 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.021990 B = 0.002030 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.995796 B =13787.901095 C =14211.457264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.067 4.067 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.233 4.233 8 H 0.057 0.943 9 N -0.760 5.760 10 C 0.166 3.834 11 C -0.118 4.118 12 C -0.115 4.115 13 C 0.130 3.870 14 N -0.700 5.700 15 C 0.593 3.407 16 O -0.559 6.559 17 C -0.021 4.021 18 C -0.094 4.094 19 C -0.113 4.113 20 Cl -0.027 7.027 21 C 0.106 3.894 22 Cl 0.018 6.982 23 N -0.505 5.505 24 H 0.442 0.558 25 C -0.145 4.145 26 H 0.257 0.743 27 H 0.365 0.635 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.412 0.588 35 H 0.167 0.833 36 H 0.086 0.914 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.444 -17.559 9.774 33.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.177 1.177 7 C -0.365 4.365 8 H 0.075 0.925 9 N -0.405 5.405 10 C 0.040 3.960 11 C -0.137 4.137 12 C -0.153 4.153 13 C 0.026 3.974 14 N -0.351 5.351 15 C 0.381 3.619 16 O -0.437 6.437 17 C -0.135 4.135 18 C -0.121 4.121 19 C -0.148 4.148 20 Cl 0.002 6.998 21 C -0.040 4.040 22 Cl 0.047 6.953 23 N -0.107 5.107 24 H 0.286 0.714 25 C -0.184 4.184 26 H 0.066 0.934 27 H 0.198 0.802 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.248 0.752 35 H 0.185 0.815 36 H 0.105 0.895 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 26.591 -17.149 9.661 33.083 hybrid contribution -0.769 0.493 0.194 0.934 sum 25.821 -16.656 9.854 32.269 Atomic orbital electron populations 1.69885 1.07127 1.26661 1.59850 1.25532 0.96152 1.01339 1.02812 0.85402 0.78623 0.79595 0.78134 1.20355 1.22391 1.17682 1.19065 0.82916 0.93427 1.41047 0.92464 1.42769 1.02400 1.04491 1.90884 1.20784 0.89907 0.87114 0.98222 1.22546 0.93457 0.99820 0.97858 1.23246 0.95018 0.97301 0.99762 1.22499 0.94288 0.91402 0.89256 1.45762 1.23161 1.24728 1.41417 1.16977 0.80836 0.84438 0.79694 1.90882 1.59934 1.27192 1.65711 1.20157 0.98460 0.89480 1.05427 1.21290 0.97034 0.98337 0.95417 1.19710 0.94481 0.97810 1.02778 1.98358 1.47285 1.95037 1.59111 1.20661 0.94265 0.91719 0.97344 1.98453 1.95225 1.23783 1.77837 1.41785 1.21746 1.16069 1.31128 0.71449 1.23551 0.96806 1.00727 0.97303 0.93376 0.80190 0.95506 0.95443 0.88929 0.88905 0.87617 0.87224 0.75151 0.81531 0.89532 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.16 13.97 21.65 0.30 -62.86 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.96 45.55 27.74 68.60 1.90 47.45 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.25 -10.87 6.52 99.48 0.65 -10.23 16 7 C -0.23 -13.23 10.47 84.03 0.88 -12.35 16 8 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 9 N -0.76 -34.59 5.41 -343.46 -1.86 -36.44 16 10 C 0.17 5.70 6.10 86.38 0.53 6.22 16 11 C -0.12 -2.90 3.75 -10.21 -0.04 -2.94 16 12 C -0.11 -1.85 7.39 31.12 0.23 -1.62 16 13 C 0.13 2.35 4.21 45.52 0.19 2.55 16 14 N -0.70 -10.09 5.36 -444.14 -2.38 -12.47 16 15 C 0.59 11.46 7.78 86.41 0.67 12.13 16 16 O -0.56 -15.48 16.50 -4.38 -0.07 -15.55 16 17 C -0.02 -0.33 7.06 40.31 0.28 -0.04 16 18 C -0.09 -1.59 10.64 22.58 0.24 -1.35 16 19 C -0.11 -1.77 6.66 22.06 0.15 -1.62 16 20 Cl -0.03 -0.40 29.12 -2.72 -0.08 -0.48 16 21 C 0.11 1.36 7.75 83.52 0.65 2.00 16 22 Cl 0.02 0.20 29.13 -2.72 -0.08 0.12 16 23 N -0.50 -5.07 6.01 -174.50 -1.05 -6.12 16 24 H 0.44 1.58 8.19 -92.71 -0.76 0.82 16 25 C -0.15 -3.38 7.45 31.18 0.23 -3.15 16 26 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 27 H 0.37 15.98 5.53 -92.71 -0.51 15.47 16 28 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.03 0.95 7.85 -2.39 -0.02 0.93 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.11 1.34 8.07 -2.39 -0.02 1.32 16 33 H 0.11 2.27 7.50 -2.39 -0.02 2.25 16 34 H 0.41 3.14 7.84 -92.71 -0.73 2.42 16 35 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 36 H 0.09 2.02 7.90 -2.39 -0.02 2.00 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -73.89 348.59 0.26 -73.62 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -0.91 Total: 16.38 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 4.48 Total: -3.65 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -4.98 Total: -117.90 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.07 Total: -15.55 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.45 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.16 Total: -0.36 kcal Total: -73.89 0.26 -73.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755215523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.610 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds