Wall clock time and date at job start Tue Mar 31 2020 16:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27948 * 1 3 3 Si 1.86799 * 119.99768 * 2 1 4 4 H 1.48488 * 109.47303 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47094 * 120.00238 * 3 2 1 6 6 H 1.48497 * 109.46862 * 239.99661 * 3 2 1 7 7 C 1.50697 * 119.99970 * 180.02562 * 2 1 3 8 8 C 1.53995 * 109.91601 * 236.45703 * 7 2 1 9 9 C 1.54592 * 105.14458 * 120.57478 * 8 7 2 10 10 H 1.08991 * 110.72899 * 263.42053 * 9 8 7 11 11 F 1.39907 * 110.72508 * 140.30955 * 9 8 7 12 12 C 1.54939 * 102.91912 * 21.95920 * 9 8 7 13 13 N 1.47907 * 109.91693 * 354.03872 * 7 2 1 14 14 C 1.46903 * 110.99643 * 94.80812 * 13 7 2 15 15 C 1.50702 * 109.47063 * 175.66835 * 14 13 7 16 16 C 1.38416 * 119.87211 * 254.52639 * 15 14 13 17 17 C 1.37910 * 120.17932 * 179.97438 * 16 15 14 18 18 C 1.39450 * 119.94177 * 0.02597 * 17 16 15 19 Xx 1.57006 * 120.12010 * 180.02562 * 18 17 16 20 19 O 1.42000 * 119.99740 * 359.97438 * 19 18 17 21 20 O 1.41995 * 120.00198 * 180.02562 * 19 18 17 22 21 C 1.39472 * 119.76137 * 359.97438 * 18 17 16 23 22 Cl 1.73594 * 120.09657 * 179.97438 * 22 18 17 24 23 C 1.38410 * 119.81073 * 359.70588 * 22 18 17 25 24 F 1.35092 * 119.97347 * 180.29139 * 24 22 18 26 25 H 0.96999 * 119.99963 * 0.02562 * 1 2 3 27 26 H 1.08994 * 109.91272 * 115.35236 * 7 2 1 28 27 H 1.08999 * 110.30428 * 239.49159 * 8 7 2 29 28 H 1.08997 * 110.30717 * 1.55795 * 8 7 2 30 29 H 1.08993 * 110.67184 * 81.02025 * 12 9 8 31 30 H 1.09008 * 110.66731 * 204.15115 * 12 9 8 32 31 H 1.09003 * 109.47243 * 295.66775 * 14 13 7 33 32 H 1.08996 * 109.47290 * 55.66662 * 14 13 7 34 33 H 1.07999 * 119.90789 * 0.02562 * 16 15 14 35 34 H 1.08004 * 120.02277 * 180.02562 * 17 16 15 36 35 H 0.96699 * 113.99765 * 179.97438 * 20 19 18 37 36 H 0.96693 * 114.00295 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2795 0.0000 0.0000 3 14 2.2134 1.6178 0.0000 4 1 1.2485 2.7464 0.0006 5 1 3.0672 1.6964 1.2125 6 1 3.0672 1.6964 -1.2125 7 6 2.0330 -1.3051 -0.0006 8 6 2.9881 -1.3599 1.2061 9 6 2.5443 -2.5994 2.0165 10 1 1.8782 -2.3106 2.8293 11 9 3.6552 -3.2912 2.5112 12 6 1.7928 -3.4512 0.9628 13 7 1.0871 -2.4330 0.1433 14 6 0.7153 -2.9789 -1.1689 15 6 -0.1622 -4.1893 -0.9791 16 6 0.3540 -5.4556 -1.1938 17 6 -0.4432 -6.5676 -1.0214 18 6 -1.7732 -6.4167 -0.6303 19 8 -2.1547 -8.9789 -0.6521 20 8 -4.0385 -7.5233 -0.0346 21 6 -2.2908 -5.1396 -0.4147 22 17 -3.9454 -4.9417 0.0717 23 6 -1.4799 -4.0309 -0.5841 24 9 -1.9762 -2.7927 -0.3704 25 1 -0.4850 0.8400 -0.0004 26 1 2.5986 -1.4068 -0.9267 27 1 4.0178 -1.4775 0.8685 28 1 2.8889 -0.4569 1.8084 29 1 2.4966 -4.0164 0.3519 30 1 1.0788 -4.1185 1.4458 31 1 0.1733 -2.2227 -1.7367 32 1 1.6161 -3.2648 -1.7119 33 1 1.3841 -5.5730 -1.4963 34 1 -0.0378 -7.5545 -1.1893 35 1 -2.7901 -9.6928 -0.5050 36 1 -4.5193 -8.3567 0.0610 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250362692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:41 Heat of formation + Delta-G solvation = 97.345732 kcal Electronic energy + Delta-G solvation = -25188.640713 eV Core-core repulsion = 20960.299615 eV Total energy + Delta-G solvation = -4228.341098 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.073 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.36445 -48.56124 -41.18848 -39.84913 -38.08879 -35.90458 -34.27016 -33.26054 -32.66854 -32.32544 -31.07441 -30.01054 -26.64306 -24.51456 -23.98404 -22.89747 -22.13873 -20.44306 -18.70868 -18.20517 -17.94317 -17.82720 -17.41883 -17.24278 -16.77127 -16.01349 -15.85897 -15.80549 -15.38425 -15.30731 -15.05156 -14.94473 -14.73814 -14.66044 -14.49152 -14.07148 -13.86830 -13.46357 -13.31903 -12.98326 -12.89339 -12.57365 -12.53247 -12.33151 -12.22073 -11.70738 -11.57146 -11.48278 -11.23622 -11.13978 -10.66923 -10.40125 -10.14629 -9.74061 -9.35408 -6.54307 -3.25679 -1.00832 -0.76391 0.44096 0.97987 1.15306 1.48020 1.56310 1.83788 1.92749 2.23959 2.61433 2.82133 3.03123 3.22915 3.30013 3.33241 3.48366 3.68896 3.81536 3.86392 4.08145 4.23988 4.30206 4.32554 4.43744 4.53946 4.62980 4.65506 4.76085 4.78879 4.91748 5.00798 5.10825 5.17382 5.76147 5.91660 6.29603 6.53566 7.10016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.002 4.002 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.241 1.241 6 H -0.234 1.234 7 C 0.098 3.902 8 C -0.153 4.153 9 C 0.082 3.918 10 H 0.094 0.906 11 F -0.219 7.219 12 C 0.007 3.993 13 N -0.503 5.503 14 C 0.089 3.911 15 C -0.080 4.080 16 C -0.002 4.002 17 C -0.090 4.090 18 C 0.331 3.669 19 O -0.739 6.739 20 O -0.650 6.650 21 C -0.108 4.108 22 Cl 0.012 6.988 23 C 0.170 3.830 24 F -0.087 7.087 25 H 0.334 0.666 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.240 0.760 34 H 0.201 0.799 35 H 0.334 0.666 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.649 6.658 -4.014 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.228 5.228 2 C -0.252 4.252 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.164 1.164 6 H -0.157 1.157 7 C -0.011 4.011 8 C -0.192 4.192 9 C 0.045 3.955 10 H 0.112 0.888 11 F -0.199 7.199 12 C -0.120 4.120 13 N -0.227 5.227 14 C -0.038 4.038 15 C -0.081 4.081 16 C -0.020 4.020 17 C -0.108 4.108 18 C 0.320 3.680 19 O -0.569 6.569 20 O -0.482 6.482 21 C -0.136 4.136 22 Cl 0.042 6.958 23 C 0.149 3.851 24 F -0.065 7.065 25 H 0.151 0.849 26 H 0.136 0.864 27 H 0.129 0.871 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.256 0.744 34 H 0.218 0.782 35 H 0.169 0.831 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.571 8.139 -3.902 13.900 hybrid contribution -1.864 -1.312 0.466 2.326 sum 8.707 6.827 -3.436 11.585 Atomic orbital electron populations 1.68236 1.10439 1.36519 1.07570 1.30396 0.96641 1.04617 0.93529 0.85370 0.79975 0.74311 0.82877 1.19681 1.16379 1.15713 1.21711 0.91003 0.88314 1.00031 1.23101 1.00966 0.98842 0.96297 1.22454 0.84371 0.91608 0.97096 0.88812 1.92824 1.56024 1.81448 1.89648 1.23901 0.97817 0.94809 0.95507 1.64631 1.38240 1.05899 1.13959 1.21375 0.98785 0.92193 0.91454 1.20603 0.91033 0.98552 0.97951 1.21789 1.01115 0.84772 0.94293 1.22164 0.85627 1.04712 0.98291 1.28274 0.76474 0.57427 1.05833 1.93422 1.37079 1.31526 1.94828 1.93576 1.35609 1.24448 1.94538 1.21665 0.92790 0.89207 1.09935 1.98508 1.12065 1.96114 1.89157 1.16875 0.90511 0.77660 1.00037 1.91731 1.87412 1.36012 1.91336 0.84881 0.86372 0.87060 0.89195 0.89106 0.89391 0.87998 0.87270 0.74393 0.78233 0.83133 0.82640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 2.24 13.13 24.11 0.32 2.55 16 2 C 0.00 0.01 5.29 88.67 0.47 0.48 16 3 Si 0.96 -7.61 28.03 68.60 1.92 -5.69 16 4 H -0.27 1.01 7.11 99.48 0.71 1.72 16 5 H -0.24 1.69 6.91 99.48 0.69 2.38 16 6 H -0.23 1.88 7.11 99.48 0.71 2.58 16 7 C 0.10 -1.12 2.56 44.31 0.11 -1.01 16 8 C -0.15 1.63 5.80 31.47 0.18 1.81 16 9 C 0.08 -0.59 4.87 31.80 0.15 -0.44 16 10 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 11 F -0.22 0.44 17.19 44.97 0.77 1.22 16 12 C 0.01 -0.08 5.39 86.65 0.47 0.39 16 13 N -0.50 4.92 4.42 -866.94 -3.83 1.09 16 14 C 0.09 -1.21 4.65 85.56 0.40 -0.81 16 15 C -0.08 0.89 4.41 -19.77 -0.09 0.80 16 16 C 0.00 0.04 9.47 22.23 0.21 0.25 16 17 C -0.09 0.68 9.75 22.48 0.22 0.90 16 18 C 0.33 1.14 9.79 22.86 0.22 1.37 16 19 O -0.74 -13.77 17.25 -127.47 -2.20 -15.97 16 20 O -0.65 -11.78 14.63 -127.47 -1.86 -13.64 16 21 C -0.11 -0.31 6.36 22.61 0.14 -0.17 16 22 Cl 0.01 0.12 25.58 -2.72 -0.07 0.05 16 23 C 0.17 -0.48 7.21 22.37 0.16 -0.32 16 24 F -0.09 -0.11 16.32 44.97 0.73 0.62 16 25 H 0.33 -1.48 8.23 -92.71 -0.76 -2.24 16 26 H 0.12 -2.04 7.67 -2.39 -0.02 -2.06 16 27 H 0.11 -1.48 8.12 -2.39 -0.02 -1.50 16 28 H 0.09 -0.90 6.40 -2.39 -0.02 -0.92 16 29 H 0.09 -1.44 8.01 -2.39 -0.02 -1.46 16 30 H 0.09 -0.80 7.96 -2.38 -0.02 -0.82 16 31 H 0.10 -1.12 8.09 -2.39 -0.02 -1.14 16 32 H 0.11 -2.34 7.77 -2.39 -0.02 -2.36 16 33 H 0.24 -6.31 7.99 -2.91 -0.02 -6.33 16 34 H 0.20 -1.74 7.77 -2.91 -0.02 -1.76 16 35 H 0.33 5.10 8.90 -74.06 -0.66 4.44 16 36 H 0.34 4.78 8.90 -74.06 -0.66 4.12 16 Total: 0.00 -30.68 337.19 -1.74 -32.41 By element: Atomic # 1 Polarization: -5.73 SS G_CDS: -0.18 Total: -5.90 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 2.66 Total: 3.26 kcal Atomic # 7 Polarization: 7.16 SS G_CDS: -3.51 Total: 3.64 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -4.06 Total: -29.61 kcal Atomic # 9 Polarization: 0.33 SS G_CDS: 1.51 Total: 1.84 kcal Atomic # 14 Polarization: -7.61 SS G_CDS: 1.92 Total: -5.69 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -0.07 Total: 0.05 kcal Total: -30.68 -1.74 -32.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250362692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.760 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds