Wall clock time and date at job start Tue Mar 31 2020 17:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99912 * 2 1 4 4 C 1.50704 * 109.46648 * 274.99650 * 3 2 1 5 5 H 1.07997 * 120.00068 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00019 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00212 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99783 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47615 * 89.99760 * 8 6 4 10 10 H 1.48500 * 109.47095 * 209.99838 * 8 6 4 11 11 H 1.48503 * 109.47227 * 329.99157 * 8 6 4 12 12 S 1.65600 * 120.00292 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40055 * 156.46193 * 12 2 1 14 14 O 1.42097 * 106.40082 * 23.54834 * 12 2 1 15 15 N 1.65600 * 107.21941 * 270.00188 * 12 2 1 16 16 C 1.46496 * 119.99728 * 65.00115 * 15 12 2 17 17 C 1.50706 * 109.47106 * 164.99627 * 16 15 12 18 18 N 1.29023 * 124.91374 * 89.71753 * 17 16 15 19 19 C 1.31778 * 117.12717 * 179.81330 * 18 17 16 20 20 C 1.50700 * 122.75541 * 180.22488 * 19 18 17 21 21 C 1.53006 * 117.49912 * 163.88994 * 20 19 18 22 22 C 1.52998 * 60.00031 * 252.51503 * 21 20 19 23 23 C 1.33646 * 114.49810 * 0.47807 * 19 18 17 24 24 S 1.70968 * 124.91703 * 270.02780 * 17 16 15 25 25 H 1.08997 * 109.47194 * 270.00229 * 1 2 3 26 26 H 1.08998 * 109.47121 * 30.01106 * 1 2 3 27 27 H 1.09002 * 109.46535 * 150.00755 * 1 2 3 28 28 H 1.09001 * 109.47022 * 34.99070 * 3 2 1 29 29 H 1.08993 * 109.47567 * 155.00030 * 3 2 1 30 30 H 0.97002 * 120.00089 * 180.02562 * 7 6 4 31 31 H 0.96998 * 120.00167 * 244.99885 * 15 12 2 32 32 H 1.09001 * 109.47001 * 44.99918 * 16 15 12 33 33 H 1.09000 * 109.47574 * 285.00134 * 16 15 12 34 34 H 1.09001 * 115.54884 * 309.60371 * 20 19 18 35 35 H 1.09000 * 117.49623 * 0.02562 * 21 20 19 36 36 H 1.09001 * 117.49423 * 145.02172 * 21 20 19 37 37 H 1.09005 * 117.49700 * 252.51079 * 22 21 20 38 38 H 1.09001 * 117.51736 * 107.48304 * 22 21 20 39 39 H 1.07993 * 126.04103 * 179.71684 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7656 -1.4155 5 1 1.9290 1.1933 -2.2332 6 6 2.9997 2.9508 -1.6665 7 7 3.1258 3.3841 -2.9018 8 14 3.7138 3.9403 -0.2521 9 1 5.1110 3.5056 0.0004 10 1 3.6998 5.3836 -0.6011 11 1 2.8979 3.7184 0.9687 12 16 2.2931 -1.4341 0.0006 13 8 3.5760 -1.1569 -0.5439 14 8 1.4115 -2.4067 -0.5435 15 7 2.5382 -1.8580 1.5826 16 6 1.3947 -2.1768 2.4410 17 6 1.8802 -2.8729 3.6865 18 7 2.2248 -2.2779 4.7782 19 6 2.6237 -3.0391 5.7772 20 6 3.0497 -2.4787 7.1097 21 6 3.1267 -3.4474 8.2915 22 6 1.9978 -2.4173 8.2190 23 6 2.6247 -4.3486 5.5100 24 16 2.0611 -4.5646 3.8546 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5140 27 1 -0.3632 -0.8901 -0.5137 28 1 1.6500 2.0044 0.5893 29 1 3.1857 1.1179 0.4343 30 1 3.5892 4.2177 -3.0784 31 1 3.4388 -1.8951 1.9408 32 1 0.7081 -2.8309 1.9035 33 1 0.8793 -1.2567 2.7164 34 1 3.7850 -1.6751 7.0683 35 1 2.8697 -4.4901 8.1051 36 1 3.9131 -3.2814 9.0278 37 1 2.0414 -1.5736 8.9078 38 1 0.9976 -2.7820 7.9850 39 1 2.9195 -5.1353 6.1886 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122933607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:30 Heat of formation + Delta-G solvation = -22.185360 kcal Electronic energy + Delta-G solvation = -23708.997000 eV Core-core repulsion = 20098.567922 eV Total energy + Delta-G solvation = -3610.429079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.081 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.17359 -38.39695 -37.88914 -37.30941 -36.92250 -36.26113 -34.50609 -31.33989 -30.27494 -28.23824 -26.78506 -25.81599 -23.85155 -23.23648 -22.56141 -20.60176 -20.40504 -19.27230 -19.08375 -18.68315 -18.22643 -17.57170 -16.87621 -16.61566 -16.28443 -16.05007 -15.55825 -15.22075 -14.97148 -14.64157 -14.48701 -14.43613 -14.14053 -13.85944 -13.56031 -13.42749 -13.20786 -13.13292 -13.08479 -13.00281 -12.40212 -12.36936 -12.27253 -12.25662 -11.99295 -11.70521 -11.56057 -11.36390 -10.87488 -10.78281 -10.57570 -10.46922 -9.82365 -9.69774 -8.28998 -6.34622 -0.62095 -0.24978 0.31796 0.69973 1.37253 1.40711 1.49050 1.59181 2.02998 2.35309 2.57331 2.68485 3.04515 3.05821 3.40737 3.59415 3.94930 3.99732 4.00911 4.07448 4.22553 4.32867 4.40606 4.53920 4.59325 4.69735 4.75205 4.77696 4.89630 4.94656 5.09289 5.10058 5.18400 5.24523 5.34391 5.47882 5.66371 5.91859 6.30381 6.68681 6.69513 7.28396 8.88523 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.003300 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.992931 B = 8483.032963 C = 9625.660913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.997 5.997 3 C 0.234 3.766 4 C -0.543 4.543 5 H 0.030 0.970 6 C 0.007 3.993 7 N -0.948 5.948 8 Si 0.942 3.058 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.230 1.230 12 S 2.802 3.198 13 O -1.005 7.005 14 O -1.000 7.000 15 N -1.116 6.116 16 C 0.193 3.807 17 C 0.018 3.982 18 N -0.474 5.474 19 C 0.077 3.923 20 C -0.107 4.107 21 C -0.151 4.151 22 C -0.164 4.164 23 C -0.246 4.246 24 S 0.173 5.827 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.268 0.732 31 H 0.422 0.578 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 -16.589 25.783 30.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.839 5.839 3 C 0.109 3.891 4 C -0.582 4.582 5 H 0.048 0.952 6 C -0.190 4.190 7 N -0.589 5.589 8 Si 0.764 3.236 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.152 1.152 12 S 2.809 3.191 13 O -0.989 6.989 14 O -0.983 6.983 15 N -0.879 5.879 16 C 0.064 3.936 17 C -0.261 4.261 18 N -0.190 5.190 19 C -0.055 4.055 20 C -0.128 4.128 21 C -0.188 4.188 22 C -0.202 4.202 23 C -0.386 4.386 24 S 0.427 5.573 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.257 0.743 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.300 -17.231 24.146 29.974 hybrid contribution 1.060 1.364 0.802 1.904 sum -3.240 -15.867 24.948 29.743 Atomic orbital electron populations 1.21709 0.77522 1.03924 1.03122 1.57293 1.16029 1.21349 1.89227 1.19220 0.91940 0.82501 0.95424 1.21714 1.36299 1.06751 0.93420 0.95159 1.25912 0.95809 0.98661 0.98656 1.70066 1.44124 1.22938 1.21722 0.85804 0.79784 0.77716 0.80273 1.19621 1.20386 1.15240 1.01182 0.72200 0.72625 0.73084 1.93596 1.42979 1.85374 1.76980 1.93516 1.67508 1.59946 1.77348 1.55917 1.15472 1.85756 1.30707 1.19918 0.87428 1.00987 0.85233 1.26802 1.05602 0.95810 0.97879 1.65996 1.13081 1.40067 0.99815 1.19687 1.01360 0.89167 0.95267 1.20401 1.03965 1.03696 0.84700 1.23165 1.01226 0.96372 0.98018 1.23039 0.94741 1.02559 0.99842 1.27261 1.10251 1.00996 1.00071 1.84077 1.58226 1.06589 1.08384 0.89704 0.91152 0.90532 0.92495 0.94935 0.92343 0.74339 0.86871 0.87572 0.86860 0.87357 0.86491 0.87286 0.89134 0.77745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.51 10.68 127.77 1.36 3.87 16 2 N -1.00 -38.52 3.23 -543.22 -1.75 -40.27 16 3 C 0.23 10.73 4.15 85.63 0.36 11.08 16 4 C -0.54 -31.62 9.94 25.60 0.25 -31.36 16 5 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 6 C 0.01 0.44 5.47 84.65 0.46 0.90 16 7 N -0.95 -60.38 13.96 21.44 0.30 -60.09 16 8 Si 0.94 43.24 27.47 68.60 1.88 45.12 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.23 -9.20 6.54 99.48 0.65 -8.55 16 12 S 2.80 104.74 6.10 -56.49 -0.34 104.40 16 13 O -1.01 -47.53 17.11 -128.00 -2.19 -49.72 16 14 O -1.00 -38.62 16.21 -128.00 -2.07 -40.69 16 15 N -1.12 -30.23 6.05 -190.79 -1.15 -31.38 16 16 C 0.19 4.21 6.82 85.64 0.58 4.79 16 17 C 0.02 0.38 6.78 88.52 0.60 0.98 16 18 N -0.47 -11.15 10.53 -179.40 -1.89 -13.04 16 19 C 0.08 1.48 6.41 41.52 0.27 1.75 16 20 C -0.11 -1.63 6.30 -11.54 -0.07 -1.71 16 21 C -0.15 -1.35 9.91 30.60 0.30 -1.05 16 22 C -0.16 -1.97 10.23 30.59 0.31 -1.65 16 23 C -0.25 -3.66 10.52 66.78 0.70 -2.96 16 24 S 0.17 2.86 23.18 -56.49 -1.31 1.55 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 27 H 0.08 2.22 7.02 -2.39 -0.02 2.21 16 28 H 0.06 2.37 7.17 -2.39 -0.02 2.36 16 29 H 0.03 1.48 7.04 -2.39 -0.02 1.47 16 30 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.42 10.69 8.64 -96.75 -0.84 9.86 16 32 H 0.11 2.13 7.75 -2.39 -0.02 2.11 16 33 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.11 0.71 6.79 -2.39 -0.02 0.69 16 36 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.21 1.71 6.96 -2.91 -0.02 1.69 16 Total: -1.00 -79.83 356.46 -3.20 -83.04 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.19 Total: 16.45 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 5.13 Total: -15.37 kcal Atomic # 7 Polarization: -140.28 SS G_CDS: -4.50 Total: -144.78 kcal Atomic # 8 Polarization: -86.15 SS G_CDS: -4.26 Total: -90.42 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Atomic # 16 Polarization: 107.61 SS G_CDS: -1.65 Total: 105.95 kcal Total: -79.83 -3.20 -83.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122933607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.851 kcal (2) G-P(sol) polarization free energy of solvation -79.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds