Wall clock time and date at job start Tue Mar 31 2020 16:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47289 * 2 1 4 4 H 1.09004 * 109.47038 * 178.48068 * 3 2 1 5 5 C 1.50698 * 109.47117 * 298.47799 * 3 2 1 6 6 H 1.08002 * 119.99878 * 119.99687 * 5 3 2 7 7 C 1.37871 * 120.00527 * 300.00066 * 5 3 2 8 8 N 1.31516 * 120.00025 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00318 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47270 * 59.99962 * 9 7 5 11 11 H 1.48499 * 109.46950 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46956 * 299.99716 * 9 7 5 13 13 N 1.46496 * 109.47224 * 58.48022 * 3 2 1 14 14 S 1.65604 * 120.00132 * 96.37962 * 13 3 2 15 15 O 1.42096 * 104.27589 * 308.98972 * 14 13 3 16 16 O 1.42097 * 104.27754 * 181.12803 * 14 13 3 17 17 C 1.81399 * 104.44500 * 65.05692 * 14 13 3 18 18 C 1.53002 * 109.46890 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.46898 * 180.02562 * 18 17 14 20 20 C 1.38246 * 119.98566 * 269.72265 * 19 18 17 21 21 C 1.38213 * 120.01023 * 179.72858 * 20 19 18 22 22 C 1.38359 * 119.98768 * 0.54868 * 21 20 19 23 23 Cl 1.73596 * 120.01366 * 179.70565 * 22 21 20 24 24 C 1.38345 * 119.97074 * 359.72542 * 22 21 20 25 25 C 1.38210 * 119.99328 * 0.02562 * 24 22 21 26 26 H 1.08997 * 109.47300 * 175.72278 * 1 2 3 27 27 H 1.09009 * 109.46616 * 295.72041 * 1 2 3 28 28 H 1.09002 * 109.47493 * 55.71934 * 1 2 3 29 29 H 1.09007 * 109.46938 * 240.00242 * 2 1 3 30 30 H 1.08993 * 109.47638 * 120.00251 * 2 1 3 31 31 H 0.96996 * 120.00590 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99825 * 276.39052 * 13 3 2 33 33 H 1.08999 * 109.47250 * 60.00488 * 17 14 13 34 34 H 1.08997 * 109.47322 * 299.99694 * 17 14 13 35 35 H 1.08999 * 109.47576 * 60.00107 * 18 17 14 36 36 H 1.08997 * 109.46829 * 299.99924 * 18 17 14 37 37 H 1.07996 * 119.99109 * 0.02562 * 20 19 18 38 38 H 1.08003 * 120.00903 * 180.27754 * 21 20 19 39 39 H 1.08004 * 120.00504 * 179.97438 * 24 22 21 40 40 H 1.08000 * 119.99880 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 0.0272 5 6 1.5687 2.1420 -1.2489 6 1 0.9456 3.0208 -1.1731 7 6 1.9329 1.6600 -2.4882 8 7 2.6921 0.5900 -2.5805 9 14 1.3481 2.5266 -4.0362 10 1 1.8426 3.9268 -4.0365 11 1 1.8728 1.8156 -5.2297 12 1 -0.1364 2.5258 -4.0732 13 7 1.5220 2.1436 1.1774 14 16 2.4510 2.2673 2.5427 15 8 2.8684 0.9345 2.8044 16 8 1.6291 2.9718 3.4632 17 6 3.8626 3.2890 2.0386 18 6 4.8062 3.4776 3.2281 19 6 5.9786 4.3269 2.8095 20 6 7.1182 3.7302 2.3033 21 6 8.1916 4.5090 1.9139 22 6 8.1297 5.8853 2.0415 23 17 9.4805 6.8636 1.5598 24 6 6.9911 6.4815 2.5534 25 6 5.9164 5.7021 2.9376 26 1 -0.3634 -1.0248 -0.0766 27 1 -0.3633 0.4460 0.9259 28 1 -0.3634 0.5788 -0.8491 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.9480 0.2506 -3.4524 32 1 0.6348 2.5353 1.1573 33 1 3.5049 4.2615 1.7004 34 1 4.3965 2.7957 1.2265 35 1 5.1640 2.5050 3.5660 36 1 4.2725 3.9707 4.0406 37 1 7.1679 2.6556 2.2076 38 1 9.0803 4.0431 1.5143 39 1 6.9424 7.5557 2.6536 40 1 5.0276 6.1673 3.3377 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425176607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:42 Heat of formation + Delta-G solvation = -74.665974 kcal Electronic energy + Delta-G solvation = -23825.503480 eV Core-core repulsion = 20178.462214 eV Total energy + Delta-G solvation = -3647.041266 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.080 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.64173 -36.77610 -36.67667 -35.98956 -35.42705 -34.25147 -32.24289 -31.27433 -30.32259 -29.56854 -26.39931 -24.45340 -23.57077 -23.06182 -21.30232 -20.06022 -18.56730 -17.57634 -17.20799 -16.41782 -16.06476 -15.94167 -15.32379 -15.28692 -14.81521 -14.02411 -13.84147 -13.76922 -13.69210 -13.51493 -13.18068 -12.84216 -12.72261 -12.22192 -11.90229 -11.87935 -11.73419 -11.59514 -11.49505 -11.47581 -11.27486 -11.04039 -10.99073 -10.91626 -10.62903 -10.49349 -10.28831 -10.01845 -9.68592 -9.24773 -9.16489 -8.76506 -8.62071 -8.23005 -6.17736 -4.26007 0.73379 0.96836 1.08865 1.92711 3.21793 3.27830 3.28219 3.34160 3.46877 4.20013 4.31675 4.48081 4.55799 4.65523 4.68717 4.85607 4.95155 5.11632 5.13509 5.25529 5.32214 5.55232 5.59135 5.76107 5.95388 6.00488 6.02193 6.23498 6.34494 6.40964 6.53865 6.58697 6.64020 7.03477 7.26772 7.43594 7.49401 7.64259 7.79273 8.01506 8.24384 8.76752 9.40185 10.87063 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.011255 B = 0.003491 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.277064 B = 8018.539938 C = 9723.492827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.135 4.135 3 C 0.279 3.721 4 H 0.038 0.962 5 C -0.524 4.524 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 N -1.101 6.101 14 S 2.609 3.391 15 O -0.959 6.959 16 O -0.981 6.981 17 C -0.630 4.630 18 C -0.073 4.073 19 C -0.064 4.064 20 C -0.101 4.101 21 C -0.107 4.107 22 C -0.040 4.040 23 Cl -0.077 7.077 24 C -0.109 4.109 25 C -0.104 4.104 26 H 0.025 0.975 27 H 0.031 0.969 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.033 0.967 31 H 0.265 0.735 32 H 0.409 0.591 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.782 8.507 9.141 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.175 4.175 3 C 0.175 3.825 4 H 0.056 0.944 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.861 5.861 14 S 2.700 3.300 15 O -0.949 6.949 16 O -0.972 6.972 17 C -0.758 4.758 18 C -0.112 4.112 19 C -0.065 4.065 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.066 4.066 23 Cl -0.048 7.048 24 C -0.127 4.127 25 C -0.122 4.122 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.243 0.757 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.999 7.992 9.788 15.513 hybrid contribution -0.129 1.132 -1.695 2.042 sum 8.870 9.124 8.093 15.080 Atomic orbital electron populations 1.21557 0.97827 0.98738 1.00614 1.21943 0.94928 0.98949 1.01665 1.18537 0.93469 0.88947 0.81573 0.94434 1.21214 1.32841 1.12381 0.89961 0.91858 1.24884 0.94839 0.94884 0.98992 1.69847 1.35478 1.22109 1.24825 0.86588 0.79183 0.79601 0.82232 1.20272 1.21210 1.20140 1.55544 1.28117 1.70532 1.31895 1.04806 0.75842 0.75433 0.73886 1.93585 1.83792 1.33490 1.84040 1.93532 1.65198 1.76183 1.62249 1.30741 1.19101 1.17621 1.08328 1.20336 0.93974 1.00936 0.95922 1.19802 0.94839 0.93915 0.97988 1.21123 0.92276 1.00610 0.97935 1.21065 0.99792 0.91522 1.00166 1.20940 0.90260 0.91899 1.03537 1.98366 1.45057 1.70834 1.90516 1.21028 0.92014 1.00574 0.99120 1.21068 0.98384 0.92979 0.99807 0.95603 0.95030 0.92027 0.88386 0.94849 0.92485 0.75741 0.84881 0.84340 0.89174 0.89389 0.84563 0.84809 0.84921 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.51 37.15 0.35 -2.35 16 2 C -0.14 -3.10 5.69 -26.73 -0.15 -3.25 16 3 C 0.28 6.23 2.36 -69.08 -0.16 6.07 16 4 H 0.04 0.87 7.17 -51.93 -0.37 0.50 16 5 C -0.52 -12.67 7.51 -34.44 -0.26 -12.93 16 6 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 7 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 8 N -0.88 -23.07 11.31 55.43 0.63 -22.44 16 9 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 N -1.10 -20.66 4.64 -5.88 -0.03 -20.69 16 14 S 2.61 43.84 5.37 -107.50 -0.58 43.27 16 15 O -0.96 -19.01 17.27 -57.54 -0.99 -20.01 16 16 O -0.98 -17.97 18.08 -57.54 -1.04 -19.01 16 17 C -0.63 -8.51 5.95 37.16 0.22 -8.29 16 18 C -0.07 -0.84 5.35 -27.88 -0.15 -0.99 16 19 C -0.06 -0.72 5.13 -104.62 -0.54 -1.26 16 20 C -0.10 -1.11 9.70 -39.59 -0.38 -1.49 16 21 C -0.11 -1.13 9.83 -39.55 -0.39 -1.52 16 22 C -0.04 -0.43 6.32 -39.50 -0.25 -0.68 16 23 Cl -0.08 -0.77 28.96 -51.86 -1.50 -2.27 16 24 C -0.11 -1.10 9.83 -39.55 -0.39 -1.49 16 25 C -0.10 -1.08 9.70 -39.59 -0.38 -1.46 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.03 0.60 7.59 -51.92 -0.39 0.21 16 28 H 0.06 1.34 7.12 -51.93 -0.37 0.97 16 29 H 0.10 2.46 6.03 -51.93 -0.31 2.15 16 30 H 0.03 0.75 7.60 -51.93 -0.39 0.36 16 31 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.41 7.19 8.64 -34.48 -0.30 6.89 16 33 H 0.13 1.63 8.14 -51.92 -0.42 1.21 16 34 H 0.14 1.94 7.46 -51.93 -0.39 1.55 16 35 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 39 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -29.85 361.10 -11.12 -40.97 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.45 Total: 8.09 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -2.58 Total: -28.06 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.60 Total: -43.13 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -2.03 Total: -39.01 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 43.84 SS G_CDS: -0.58 Total: 43.27 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.85 -11.12 -40.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425176607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.697 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds