Wall clock time and date at job start Tue Mar 31 2020 18:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99564 * 2 1 4 4 N 1.34769 * 120.00277 * 180.02562 * 2 1 3 5 5 C 1.39457 * 120.00353 * 185.26586 * 4 2 1 6 6 C 1.39375 * 120.39217 * 32.88072 * 5 4 2 7 7 C 1.38283 * 118.43212 * 179.97438 * 6 5 4 8 8 C 1.39491 * 119.14820 * 359.97438 * 7 6 5 9 9 C 1.47914 * 119.64173 * 179.97438 * 8 7 6 10 10 O 1.21550 * 120.00355 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99600 * 179.72916 * 9 8 7 12 12 C 1.46504 * 119.99838 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47058 * 35.00007 * 12 11 9 14 14 C 1.50702 * 109.46885 * 154.99781 * 12 11 9 15 15 H 1.08003 * 120.00184 * 0.02562 * 14 12 11 16 16 C 1.37884 * 119.99940 * 179.97438 * 14 12 11 17 17 N 1.31513 * 119.99805 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00126 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47002 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46905 * 120.00153 * 18 16 14 21 21 H 1.48498 * 109.46981 * 240.00010 * 18 16 14 22 22 C 1.52998 * 109.47114 * 274.99788 * 12 11 9 23 23 F 1.39893 * 109.46910 * 60.00226 * 22 12 11 24 24 F 1.39903 * 109.46720 * 180.02562 * 22 12 11 25 25 F 1.39902 * 109.47021 * 300.00052 * 22 12 11 26 26 N 1.32811 * 120.71214 * 0.26223 * 8 7 6 27 27 C 1.31353 * 121.70972 * 359.46227 * 26 8 7 28 28 H 1.09000 * 109.46900 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46764 * 299.99400 * 1 2 3 30 30 H 1.08996 * 109.47508 * 59.99843 * 1 2 3 31 31 H 0.97002 * 120.00228 * 5.26538 * 4 2 1 32 32 H 1.07999 * 120.78564 * 359.96185 * 6 5 4 33 33 H 1.08002 * 120.42863 * 180.02562 * 7 6 5 34 34 H 0.96998 * 120.00586 * 359.97438 * 11 9 8 35 35 H 0.96996 * 119.99989 * 179.97438 * 17 16 14 36 36 H 1.08001 * 119.60655 * 180.29468 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5711 -1.1697 0.1103 6 6 4.2203 -0.1927 0.8631 7 6 5.6000 -0.2341 0.9459 8 6 6.2907 -1.2456 0.2784 9 6 7.7666 -1.2999 0.3592 10 8 8.3711 -0.4663 1.0050 11 7 8.4408 -2.2773 -0.2785 12 6 9.9027 -2.3308 -0.1990 13 1 10.2254 -1.9968 0.7871 14 6 10.3666 -3.7465 -0.4264 15 1 9.6448 -4.5281 -0.6121 16 6 11.7127 -4.0438 -0.3986 17 7 12.5918 -3.0919 -0.1730 18 14 12.2879 -5.7984 -0.6812 19 1 11.1108 -6.6742 -0.9105 20 1 13.1773 -5.8424 -1.8696 21 1 13.0327 -6.2735 0.5124 22 6 10.5054 -1.4185 -1.2691 23 9 10.0747 -0.1044 -1.0579 24 9 11.9014 -1.4701 -1.1935 25 9 10.0912 -1.8473 -2.5347 26 7 5.6378 -2.1571 -0.4335 27 6 4.3277 -2.1501 -0.5290 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6991 -2.0054 -0.0780 32 1 3.6590 0.5786 1.3695 33 1 6.1359 0.5067 1.5208 34 1 7.9582 -2.9454 -0.7901 35 1 13.5387 -3.3011 -0.1530 36 1 3.8312 -2.9106 -1.1133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412309607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:43 Heat of formation + Delta-G solvation = -166.391735 kcal Electronic energy + Delta-G solvation = -28275.814454 eV Core-core repulsion = 23539.078555 eV Total energy + Delta-G solvation = -4736.735899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.31195 -45.96567 -45.57678 -41.13638 -39.74557 -38.32646 -35.44492 -34.70749 -32.72647 -32.22666 -31.35270 -29.55760 -28.08582 -24.72647 -24.42688 -23.62471 -21.79807 -21.05009 -20.01893 -18.50210 -18.05462 -17.41098 -16.88600 -16.72303 -16.59334 -16.37537 -15.79009 -15.60029 -14.92741 -14.69856 -14.57506 -14.50976 -14.09588 -13.65840 -13.36434 -13.16840 -13.07063 -12.88265 -12.71175 -12.62779 -12.40566 -12.34488 -12.23250 -11.94084 -11.78152 -11.20843 -11.15406 -10.84869 -10.76889 -10.59802 -10.39875 -9.96053 -9.72020 -9.62008 -9.28125 -8.70913 -8.56846 -8.21501 -6.21386 -4.44740 0.56812 1.17487 2.08717 2.56069 3.08821 3.20348 3.27432 3.31340 3.68487 4.01506 4.17206 4.22965 4.32306 4.58713 4.60681 4.61554 4.83579 4.88696 4.95612 5.00889 5.13822 5.30947 5.56456 5.70165 5.84205 5.90467 5.97273 6.03280 6.25854 6.51615 6.84285 6.93666 7.17319 7.48430 7.59322 7.65403 7.72242 8.36084 8.52521 8.84451 9.22637 10.70438 Molecular weight = 331.09amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.002924 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.588315 B = 9573.260690 C =10171.267050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.509 3.491 3 O -0.522 6.522 4 N -0.667 5.667 5 C 0.104 3.896 6 C -0.088 4.088 7 C -0.090 4.090 8 C 0.075 3.925 9 C 0.561 3.439 10 O -0.529 6.529 11 N -0.688 5.688 12 C 0.242 3.758 13 H 0.087 0.913 14 C -0.550 4.550 15 H 0.080 0.920 16 C 0.064 3.936 17 N -0.840 5.840 18 Si 0.916 3.084 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.417 3.583 23 F -0.218 7.218 24 F -0.136 7.136 25 F -0.208 7.208 26 N -0.434 5.434 27 C 0.078 3.922 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.415 0.585 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.409 0.591 35 H 0.268 0.732 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.422 0.522 0.585 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.297 3.703 3 O -0.397 6.397 4 N -0.314 5.314 5 C 0.007 3.993 6 C -0.116 4.116 7 C -0.112 4.112 8 C -0.064 4.064 9 C 0.344 3.656 10 O -0.406 6.406 11 N -0.337 5.337 12 C 0.137 3.863 13 H 0.105 0.895 14 C -0.587 4.587 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.743 3.257 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.361 3.639 23 F -0.200 7.200 24 F -0.117 7.117 25 F -0.190 7.190 26 N -0.145 5.145 27 C -0.085 4.085 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.252 0.748 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.245 0.755 35 H 0.078 0.922 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -20.841 1.324 0.638 20.892 hybrid contribution -0.571 -0.763 -0.364 1.020 sum -21.411 0.561 0.275 21.420 Atomic orbital electron populations 1.21858 0.90307 1.04735 1.05903 1.21120 0.91059 0.83058 0.75034 1.90786 1.70464 1.31174 1.47253 1.43525 1.04805 1.10285 1.72738 1.18985 0.83978 0.98640 0.97688 1.21544 0.94258 0.98867 0.96911 1.22074 0.93570 0.97846 0.97683 1.21383 0.95039 0.93037 0.96936 1.17823 0.85137 0.82236 0.80389 1.90795 1.68479 1.39412 1.41874 1.45944 1.08298 1.28929 1.50555 1.19819 0.75509 0.96217 0.94793 0.89526 1.20930 0.92988 0.91005 1.53759 0.90236 1.25091 0.96340 0.98731 0.94282 1.70412 1.02485 1.31023 1.43420 0.86141 0.78869 0.82752 0.77976 1.19332 1.20574 1.20591 1.23111 0.79131 0.78528 0.83152 1.93068 1.90293 1.41714 1.94894 1.93408 1.27165 1.95391 1.95735 1.92995 1.90706 1.89995 1.45299 1.67568 1.08996 1.23338 1.14575 1.22598 0.89145 0.98622 0.98146 0.90143 0.88141 0.88203 0.74837 0.83327 0.82893 0.75495 0.92176 0.81995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.39 36.01 0.37 -0.16 16 2 C 0.51 4.04 7.69 -10.99 -0.08 3.96 16 3 O -0.52 -6.70 14.79 5.56 0.08 -6.62 16 4 N -0.67 -4.57 5.33 -9.74 -0.05 -4.62 16 5 C 0.10 1.12 6.31 -83.55 -0.53 0.59 16 6 C -0.09 -1.12 8.75 -39.14 -0.34 -1.46 16 7 C -0.09 -1.36 9.62 -39.10 -0.38 -1.73 16 8 C 0.07 1.29 6.75 -83.01 -0.56 0.73 16 9 C 0.56 11.92 7.33 -12.30 -0.09 11.83 16 10 O -0.53 -12.67 14.90 5.32 0.08 -12.59 16 11 N -0.69 -15.16 4.97 -55.85 -0.28 -15.44 16 12 C 0.24 6.19 2.21 -69.08 -0.15 6.04 16 13 H 0.09 2.43 7.57 -51.93 -0.39 2.04 16 14 C -0.55 -14.32 8.47 -34.44 -0.29 -14.61 16 15 H 0.08 1.97 7.74 -52.48 -0.41 1.57 16 16 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 17 N -0.84 -23.24 9.50 55.43 0.53 -22.71 16 18 Si 0.92 20.30 29.54 -169.99 -5.02 15.28 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 C 0.42 11.01 2.81 37.16 0.10 11.12 16 23 F -0.22 -5.71 15.69 2.25 0.04 -5.67 16 24 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 25 F -0.21 -5.33 16.94 2.25 0.04 -5.29 16 26 N -0.43 -6.62 9.52 -9.64 -0.09 -6.71 16 27 C 0.08 0.88 11.12 -17.34 -0.19 0.69 16 28 H 0.08 0.04 7.92 -51.93 -0.41 -0.37 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.41 1.17 8.66 -40.82 -0.35 0.82 16 32 H 0.15 1.81 6.47 -52.49 -0.34 1.47 16 33 H 0.15 2.25 7.63 -52.49 -0.40 1.85 16 34 H 0.41 8.28 7.86 -40.82 -0.32 7.95 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 328.55 15.07 4.95 4.95 Total: -1.00 -34.17 328.55 -4.96 -39.13 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.03 Total: 5.51 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: -2.23 Total: 18.58 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.11 Total: -49.49 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.16 Total: -19.20 kcal Atomic # 9 Polarization: -14.86 SS G_CDS: 0.10 Total: -14.76 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.17 -4.96 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412309607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.265 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds