Wall clock time and date at job start Tue Mar 31 2020 18:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47240 * 2 1 4 4 C 1.36940 * 119.99339 * 275.30386 * 3 2 1 5 5 H 1.07997 * 120.00573 * 37.58517 * 4 3 2 6 6 C 1.38818 * 120.00007 * 217.57710 * 4 3 2 7 7 N 1.31615 * 119.99749 * 21.42927 * 6 4 3 8 8 Si 1.86796 * 120.00117 * 201.42798 * 6 4 3 9 9 H 1.48497 * 109.47210 * 60.00293 * 8 6 4 10 10 H 1.48499 * 109.46792 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46959 * 300.00060 * 8 6 4 12 12 C 1.46501 * 120.00291 * 95.30683 * 3 2 1 13 13 C 1.52998 * 109.46620 * 269.99639 * 12 3 2 14 14 C 1.53006 * 109.46806 * 179.97438 * 13 12 3 15 15 N 1.46499 * 109.47245 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00156 * 180.02562 * 15 14 13 17 17 O 1.21637 * 119.99625 * 0.02562 * 16 15 14 18 18 C 1.47242 * 120.00282 * 179.97438 * 16 15 14 19 19 N 1.33651 * 123.13717 * 359.97438 * 18 16 15 20 20 C 1.28762 * 115.71605 * 179.97438 * 19 18 16 21 21 Cl 1.73604 * 124.72448 * 179.97438 * 20 19 18 22 22 S 1.70764 * 110.54964 * 0.02562 * 20 19 18 23 23 C 1.35149 * 123.13903 * 179.97438 * 18 16 15 24 24 C 1.50705 * 125.56936 * 0.04345 * 23 18 16 25 25 H 1.08997 * 109.46597 * 60.00484 * 1 2 3 26 26 H 1.08993 * 109.47012 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47104 * 300.00967 * 1 2 3 28 28 H 1.08992 * 109.47097 * 239.99485 * 2 1 3 29 29 H 1.09003 * 109.46974 * 119.99346 * 2 1 3 30 30 H 0.96996 * 120.00543 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46445 * 150.00035 * 12 3 2 32 32 H 1.08994 * 109.47035 * 29.99936 * 12 3 2 33 33 H 1.08998 * 109.47388 * 60.00974 * 13 12 3 34 34 H 1.08994 * 109.47660 * 299.99915 * 13 12 3 35 35 H 1.09002 * 109.46953 * 60.00269 * 14 13 12 36 36 H 1.09000 * 109.47312 * 300.00804 * 14 13 12 37 37 H 0.96999 * 119.99748 * 0.02562 * 15 14 13 38 38 H 1.08997 * 109.47112 * 89.99623 * 24 23 18 39 39 H 1.08998 * 109.47067 * 209.99806 * 24 23 18 40 40 H 1.09006 * 109.46838 * 329.99673 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1433 2.0632 -1.1809 5 1 1.4107 1.9277 -1.9629 6 6 3.2114 2.9288 -1.3730 7 7 4.3028 2.7979 -0.6492 8 14 3.0996 4.2792 -2.6588 9 1 1.9631 5.1783 -2.3348 10 1 4.3626 5.0603 -2.6671 11 1 2.8848 3.6720 -3.9969 12 6 2.3732 2.0328 1.2633 13 6 1.1426 2.7384 1.8363 14 6 1.5130 3.4184 3.1560 15 7 0.3345 4.0935 3.7050 16 6 0.4242 4.7645 4.8705 17 8 1.4837 4.8099 5.4661 18 6 -0.7602 5.4436 5.4221 19 7 -1.9534 5.4357 4.8201 20 6 -2.8905 6.0754 5.4288 21 17 -4.5239 6.2164 4.8579 22 16 -2.3025 6.7670 6.8752 23 6 -0.7420 6.1332 6.5843 24 6 0.4582 6.3143 7.4774 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 5.0490 3.4029 -0.7830 31 1 3.1617 2.7641 1.0858 32 1 2.7255 1.2835 1.9721 33 1 0.3541 2.0070 2.0138 34 1 0.7904 3.4877 1.1274 35 1 2.3016 4.1497 2.9790 36 1 1.8650 2.6688 3.8647 37 1 -0.5104 4.0577 3.2298 38 1 0.9991 7.2132 7.1814 39 1 0.1297 6.4122 8.5121 40 1 1.1141 5.4486 7.3848 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752199096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:09 Heat of formation + Delta-G solvation = 11.917924 kcal Electronic energy + Delta-G solvation = -23295.331156 eV Core-core repulsion = 19684.337200 eV Total energy + Delta-G solvation = -3610.993956 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.086 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.81353 -38.76204 -37.30847 -36.43217 -34.90666 -32.84456 -31.84007 -31.33473 -28.77641 -27.84228 -25.44138 -24.74766 -23.71060 -22.33332 -21.00614 -20.25598 -19.58903 -18.98027 -16.84223 -16.60797 -16.35327 -16.04703 -15.40424 -15.14062 -14.72445 -14.08726 -13.99909 -13.84700 -13.54229 -13.50119 -13.28336 -12.93161 -12.57728 -12.33092 -12.11130 -12.00654 -11.86789 -11.56702 -11.41207 -11.13517 -11.00228 -10.71658 -10.57393 -10.45730 -10.40115 -10.05320 -9.91786 -9.83744 -9.62761 -9.51243 -9.25992 -8.80371 -8.44570 -6.54026 -5.76403 -3.35414 0.00529 0.24707 1.02464 1.40896 1.57887 3.22178 3.29666 3.38452 3.44293 3.46351 4.01442 4.47055 4.49672 4.64925 5.23500 5.27238 5.29023 5.41959 5.43141 5.67088 5.84409 5.90543 6.00900 6.10793 6.30558 6.38152 6.45152 6.48642 6.60759 6.73626 6.78816 6.83724 6.94268 7.12845 7.20764 7.63893 7.69869 7.84586 8.21847 8.54899 9.22196 9.84523 10.43454 11.23115 Molecular weight = 331.09amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.002693 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.041964 B =10395.574429 C =10761.476217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.152 3.848 13 C -0.148 4.148 14 C 0.120 3.880 15 N -0.703 5.703 16 C 0.590 3.410 17 O -0.532 6.532 18 C 0.011 3.989 19 N -0.424 5.424 20 C 0.042 3.958 21 Cl 0.031 6.969 22 S 0.265 5.735 23 C -0.179 4.179 24 C -0.089 4.089 25 H 0.048 0.952 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.033 0.967 30 H 0.255 0.745 31 H 0.095 0.905 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.408 0.592 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 8.077 18.083 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.025 3.975 13 C -0.188 4.188 14 C -0.003 4.003 15 N -0.353 5.353 16 C 0.373 3.627 17 O -0.410 6.410 18 C -0.123 4.123 19 N -0.142 5.142 20 C -0.262 4.262 21 Cl 0.059 6.941 22 S 0.518 5.482 23 C -0.304 4.304 24 C -0.147 4.147 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.244 0.756 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.562 8.467 18.613 25.104 hybrid contribution -0.196 0.322 -1.546 1.591 sum -14.758 8.789 17.067 24.214 Atomic orbital electron populations 1.22373 1.00168 0.98875 1.01157 1.20845 0.91664 0.87375 0.98700 1.43733 1.76049 1.08195 1.02479 1.18946 1.04644 1.21318 0.94166 0.92387 1.25174 0.94196 1.01260 0.98057 1.69985 1.03167 1.37306 1.42409 0.86498 0.76923 0.82437 0.81699 1.20921 1.21591 1.20714 1.20787 0.94357 0.96619 0.85762 1.22559 1.02457 0.99982 0.93805 1.21580 0.86740 0.96185 0.95824 1.46051 1.15205 1.51886 1.22161 1.16928 0.85608 0.78738 0.81469 1.90765 1.28120 1.62277 1.59870 1.20234 0.92338 1.05025 0.94710 1.66663 0.98777 1.17153 1.31588 1.26926 0.94544 1.05650 0.99110 1.98444 1.10796 1.96243 1.88655 1.82905 0.99009 1.47377 1.18918 1.25794 1.02275 1.01858 1.00425 1.20625 0.92542 1.05894 0.95682 0.93265 0.94645 0.93784 0.93890 0.94844 0.93471 0.88727 0.95649 0.92959 0.91610 0.91155 0.91649 0.75647 0.89459 0.90964 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 10.21 37.16 0.38 -2.66 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.96 16 3 N -0.58 -14.38 2.43 -173.24 -0.42 -14.81 16 4 C -0.26 -7.08 9.45 -15.06 -0.14 -7.22 16 5 H 0.06 1.58 7.92 -52.49 -0.42 1.16 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -25.37 11.47 55.49 0.64 -24.73 16 8 Si 0.90 21.57 29.60 -169.99 -5.03 16.54 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.15 3.47 5.33 -4.04 -0.02 3.44 16 13 C -0.15 -2.81 5.65 -26.73 -0.15 -2.96 16 14 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 15 N -0.70 -11.01 5.55 -61.44 -0.34 -11.35 16 16 C 0.59 9.24 7.79 -12.60 -0.10 9.14 16 17 O -0.53 -9.24 14.10 5.24 0.07 -9.17 16 18 C 0.01 0.15 6.70 -84.52 -0.57 -0.42 16 19 N -0.42 -5.51 10.13 -9.45 -0.10 -5.60 16 20 C 0.04 0.44 7.98 51.48 0.41 0.85 16 21 Cl 0.03 0.28 29.33 -51.86 -1.52 -1.24 16 22 S 0.27 2.06 22.93 -107.50 -2.47 -0.41 16 23 C -0.18 -1.89 6.40 -35.40 -0.23 -2.11 16 24 C -0.09 -0.79 9.64 36.01 0.35 -0.44 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.79 6.64 -51.93 -0.34 0.44 16 28 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 29 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.10 2.46 5.52 -51.93 -0.29 2.17 16 32 H 0.03 0.55 7.86 -51.93 -0.41 0.14 16 33 H 0.05 0.95 6.64 -51.93 -0.34 0.60 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.41 6.02 7.99 -40.82 -0.33 5.70 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 1.25 5.99 -51.93 -0.31 0.94 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -30.31 362.89 -9.26 -39.57 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.36 Total: 2.84 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -0.20 Total: 2.90 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.22 Total: -56.50 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.47 Total: -0.41 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.52 Total: -1.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.31 -9.26 -39.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752199096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.487 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds