Wall clock time and date at job start Tue Mar 31 2020 18:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47240 * 2 1 4 4 C 1.36940 * 119.99339 * 275.30386 * 3 2 1 5 5 H 1.07997 * 120.00573 * 37.58517 * 4 3 2 6 6 C 1.38818 * 120.00007 * 217.57710 * 4 3 2 7 7 N 1.31615 * 119.99749 * 21.42927 * 6 4 3 8 8 Si 1.86796 * 120.00117 * 201.42798 * 6 4 3 9 9 H 1.48497 * 109.47210 * 60.00293 * 8 6 4 10 10 H 1.48499 * 109.46792 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46959 * 300.00060 * 8 6 4 12 12 C 1.46501 * 120.00291 * 95.30683 * 3 2 1 13 13 C 1.52998 * 109.46620 * 269.99639 * 12 3 2 14 14 C 1.53006 * 109.46806 * 179.97438 * 13 12 3 15 15 N 1.46499 * 109.47245 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00156 * 180.02562 * 15 14 13 17 17 O 1.21637 * 119.99625 * 0.02562 * 16 15 14 18 18 C 1.47242 * 120.00282 * 179.97438 * 16 15 14 19 19 N 1.33651 * 123.13717 * 359.97438 * 18 16 15 20 20 C 1.28762 * 115.71605 * 179.97438 * 19 18 16 21 21 Cl 1.73604 * 124.72448 * 179.97438 * 20 19 18 22 22 S 1.70764 * 110.54964 * 0.02562 * 20 19 18 23 23 C 1.35149 * 123.13903 * 179.97438 * 18 16 15 24 24 C 1.50705 * 125.56936 * 0.04345 * 23 18 16 25 25 H 1.08997 * 109.46597 * 60.00484 * 1 2 3 26 26 H 1.08993 * 109.47012 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47104 * 300.00967 * 1 2 3 28 28 H 1.08992 * 109.47097 * 239.99485 * 2 1 3 29 29 H 1.09003 * 109.46974 * 119.99346 * 2 1 3 30 30 H 0.96996 * 120.00543 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46445 * 150.00035 * 12 3 2 32 32 H 1.08994 * 109.47035 * 29.99936 * 12 3 2 33 33 H 1.08998 * 109.47388 * 60.00974 * 13 12 3 34 34 H 1.08994 * 109.47660 * 299.99915 * 13 12 3 35 35 H 1.09002 * 109.46953 * 60.00269 * 14 13 12 36 36 H 1.09000 * 109.47312 * 300.00804 * 14 13 12 37 37 H 0.96999 * 119.99748 * 0.02562 * 15 14 13 38 38 H 1.08997 * 109.47112 * 89.99623 * 24 23 18 39 39 H 1.08998 * 109.47067 * 209.99806 * 24 23 18 40 40 H 1.09006 * 109.46838 * 329.99673 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1433 2.0632 -1.1809 5 1 1.4107 1.9277 -1.9629 6 6 3.2114 2.9288 -1.3730 7 7 4.3028 2.7979 -0.6492 8 14 3.0996 4.2792 -2.6588 9 1 1.9631 5.1783 -2.3348 10 1 4.3626 5.0603 -2.6671 11 1 2.8848 3.6720 -3.9969 12 6 2.3732 2.0328 1.2633 13 6 1.1426 2.7384 1.8363 14 6 1.5130 3.4184 3.1560 15 7 0.3345 4.0935 3.7050 16 6 0.4242 4.7645 4.8705 17 8 1.4837 4.8099 5.4661 18 6 -0.7602 5.4436 5.4221 19 7 -1.9534 5.4357 4.8201 20 6 -2.8905 6.0754 5.4288 21 17 -4.5239 6.2164 4.8579 22 16 -2.3025 6.7670 6.8752 23 6 -0.7420 6.1332 6.5843 24 6 0.4582 6.3143 7.4774 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 5.0490 3.4029 -0.7830 31 1 3.1617 2.7641 1.0858 32 1 2.7255 1.2835 1.9721 33 1 0.3541 2.0070 2.0138 34 1 0.7904 3.4877 1.1274 35 1 2.3016 4.1497 2.9790 36 1 1.8650 2.6688 3.8647 37 1 -0.5104 4.0577 3.2298 38 1 0.9991 7.2132 7.1814 39 1 0.1297 6.4122 8.5121 40 1 1.1141 5.4486 7.3848 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752199096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:08 Heat of formation + Delta-G solvation = -6.999815 kcal Electronic energy + Delta-G solvation = -23296.151491 eV Core-core repulsion = 19684.337200 eV Total energy + Delta-G solvation = -3611.814290 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78764 -39.87166 -38.21786 -38.00803 -36.33103 -33.82910 -33.66066 -32.84419 -30.38798 -28.96419 -27.00802 -25.78203 -25.21768 -23.52279 -22.52223 -22.02155 -20.77663 -19.82844 -18.62567 -17.74122 -17.32960 -17.16586 -16.88215 -16.56886 -16.24909 -15.64602 -15.57040 -14.92596 -14.86237 -14.56633 -14.27969 -14.16032 -14.07912 -13.73957 -13.25952 -13.18323 -12.92203 -12.79695 -12.75720 -12.70076 -12.58982 -12.56719 -12.35705 -12.16303 -11.94219 -11.48636 -11.29472 -11.25346 -10.94509 -10.60097 -10.49314 -10.29048 -9.90520 -8.54872 -7.81349 -5.45247 -0.79083 -0.46617 0.24114 0.61031 0.66246 1.44781 1.47772 1.53876 2.10455 2.13197 2.50748 3.08270 3.24081 3.65526 3.68843 3.78129 4.13065 4.22500 4.38689 4.43811 4.52905 4.62618 4.71695 4.73128 4.76240 4.87799 4.95025 5.01885 5.14169 5.17569 5.32166 5.38210 5.43959 5.59323 5.69100 5.83264 5.94511 6.44487 6.48142 7.01797 7.18885 7.88543 8.41046 9.13427 Molecular weight = 331.09amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.002693 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.041964 B =10395.574429 C =10761.476217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 N -0.602 5.602 4 C -0.268 4.268 5 H 0.053 0.947 6 C -0.033 4.033 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.281 1.281 10 H -0.293 1.293 11 H -0.274 1.274 12 C 0.153 3.847 13 C -0.125 4.125 14 C 0.134 3.866 15 N -0.703 5.703 16 C 0.587 3.413 17 O -0.557 6.557 18 C -0.019 4.019 19 N -0.452 5.452 20 C 0.018 3.982 21 Cl 0.039 6.961 22 S 0.374 5.626 23 C -0.185 4.185 24 C -0.090 4.090 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.252 0.748 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.413 0.587 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.941 8.954 19.659 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.323 5.323 4 C -0.398 4.398 5 H 0.071 0.929 6 C -0.231 4.231 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.207 1.207 10 H -0.219 1.219 11 H -0.200 1.200 12 C 0.026 3.974 13 C -0.165 4.165 14 C 0.010 3.990 15 N -0.353 5.353 16 C 0.372 3.628 17 O -0.437 6.437 18 C -0.153 4.153 19 N -0.171 5.171 20 C -0.285 4.285 21 Cl 0.067 6.933 22 S 0.627 5.373 23 C -0.310 4.310 24 C -0.148 4.148 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.249 0.751 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.770 9.336 20.194 27.860 hybrid contribution 0.409 0.048 -1.925 1.968 sum -16.362 9.384 18.269 26.259 Atomic orbital electron populations 1.22179 0.97494 1.00759 1.00679 1.20992 0.93653 0.85698 0.98726 1.43980 1.76460 1.09583 1.02283 1.19144 1.04183 1.21578 0.94896 0.92901 1.25819 0.93974 1.03169 1.00115 1.70111 1.03703 1.38040 1.44105 0.85580 0.76549 0.79937 0.79846 1.20711 1.21856 1.19973 1.20682 0.94981 0.96154 0.85557 1.22195 1.00883 0.99441 0.93958 1.21250 0.86972 0.95765 0.95031 1.45925 1.14707 1.52149 1.22557 1.17293 0.86318 0.78260 0.80936 1.90748 1.29347 1.63126 1.60430 1.19863 0.91906 1.07296 0.96234 1.66580 0.99084 1.18559 1.32864 1.27267 0.94698 1.05924 1.00622 1.98446 1.09880 1.96169 1.88850 1.82535 0.95210 1.44142 1.15387 1.26187 1.04682 1.00660 0.99511 1.20678 0.91830 1.05007 0.97311 0.94599 0.91553 0.93323 0.95133 0.93557 0.93921 0.92013 0.95057 0.91539 0.93414 0.92950 0.91262 0.75109 0.88807 0.87606 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 10.21 71.98 0.73 -4.56 16 2 C 0.13 5.65 6.44 86.38 0.56 6.20 16 3 N -0.60 -29.89 2.43 -702.01 -1.71 -31.60 16 4 C -0.27 -14.70 9.45 84.03 0.79 -13.91 16 5 H 0.05 2.91 7.92 -2.91 -0.02 2.89 16 6 C -0.03 -1.85 4.95 84.86 0.42 -1.43 16 7 N -0.92 -53.78 11.47 21.65 0.25 -53.53 16 8 Si 0.95 45.00 29.60 68.60 2.03 47.03 16 9 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 12 C 0.15 7.11 5.33 86.38 0.46 7.57 16 13 C -0.12 -4.79 5.65 30.60 0.17 -4.62 16 14 C 0.13 4.69 5.67 86.38 0.49 5.18 16 15 N -0.70 -22.30 5.55 -466.53 -2.59 -24.89 16 16 C 0.59 18.60 7.79 86.61 0.68 19.27 16 17 O -0.56 -19.73 14.10 -4.15 -0.06 -19.79 16 18 C -0.02 -0.49 6.70 40.52 0.27 -0.22 16 19 N -0.45 -11.34 10.13 -183.81 -1.86 -13.20 16 20 C 0.02 0.35 7.98 130.69 1.04 1.40 16 21 Cl 0.04 0.63 29.33 -2.72 -0.08 0.55 16 22 S 0.37 4.59 22.93 -56.49 -1.30 3.30 16 23 C -0.19 -3.55 6.40 24.98 0.16 -3.39 16 24 C -0.09 -1.43 9.64 71.24 0.69 -0.74 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 1.64 6.64 -2.39 -0.02 1.62 16 28 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 29 H 0.05 1.80 7.83 -2.39 -0.02 1.78 16 30 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.06 3.33 5.52 -2.39 -0.01 3.32 16 32 H 0.03 1.38 7.86 -2.39 -0.02 1.36 16 33 H 0.07 2.36 6.64 -2.39 -0.02 2.35 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.41 12.27 7.99 -92.71 -0.74 11.52 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 1.91 5.99 -2.38 -0.01 1.90 16 Total: -1.00 -66.71 362.89 1.48 -65.22 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.33 Total: 16.15 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 6.47 Total: 10.76 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -5.91 Total: -123.22 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.06 Total: -19.79 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.30 Total: 3.30 kcal Atomic # 17 Polarization: 0.63 SS G_CDS: -0.08 Total: 0.55 kcal Total: -66.71 1.48 -65.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752199096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.222 kcal (2) G-P(sol) polarization free energy of solvation -66.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds