Wall clock time and date at job start Tue Mar 31 2020 16:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 N 1.46895 * 109.47235 * 120.00233 * 2 1 3 5 5 C 1.46906 * 110.99789 * 274.99821 * 4 2 1 6 6 C 1.50703 * 109.47109 * 179.97438 * 5 4 2 7 7 O 1.21296 * 119.99996 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99978 * 180.02562 * 6 5 4 9 9 C 1.37099 * 119.99848 * 180.02562 * 8 6 5 10 10 H 1.07998 * 120.00405 * 359.97438 * 9 8 6 11 11 C 1.38955 * 119.99710 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00111 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99871 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47071 * 60.00529 * 13 11 9 15 15 H 1.48496 * 109.47153 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47603 * 300.00548 * 13 11 9 17 17 C 1.50701 * 109.47125 * 239.99751 * 2 1 3 18 18 N 1.28806 * 124.75346 * 104.99657 * 17 2 1 19 19 C 1.32516 * 117.12377 * 180.02562 * 18 17 2 20 20 C 1.48348 * 122.96103 * 179.97438 * 19 18 17 21 21 C 1.39363 * 120.12283 * 4.72626 * 20 19 18 22 22 C 1.38014 * 119.87186 * 179.76873 * 21 20 19 23 23 C 1.38332 * 120.12181 * 0.50816 * 22 21 20 24 24 C 1.38323 * 120.24886 * 359.74295 * 23 22 21 25 25 C 1.38001 * 120.12936 * 0.02562 * 24 23 22 26 26 C 1.34837 * 114.07827 * 0.02562 * 19 18 17 27 27 S 1.70915 * 124.75953 * 284.69874 * 17 2 1 28 28 H 1.09002 * 109.47368 * 300.00021 * 1 2 3 29 29 H 1.09003 * 109.47249 * 60.00430 * 1 2 3 30 30 H 1.09009 * 109.47420 * 179.97438 * 1 2 3 31 31 H 1.00899 * 111.00672 * 151.04765 * 4 2 1 32 32 H 1.08992 * 109.47459 * 299.99826 * 5 4 2 33 33 H 1.09004 * 109.47040 * 59.99976 * 5 4 2 34 34 H 0.97002 * 119.99767 * 359.97438 * 8 6 5 35 35 H 0.96996 * 120.00275 * 179.97438 * 12 11 9 36 36 H 1.07998 * 120.06494 * 359.97438 * 21 20 19 37 37 H 1.07998 * 119.93950 * 180.27304 * 22 21 20 38 38 H 1.07998 * 119.86947 * 179.72042 * 23 22 21 39 39 H 1.08000 * 119.93369 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.06751 * 180.02562 * 25 24 23 41 41 H 1.07994 * 126.06901 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5873 -0.5218 3.5560 7 8 2.8678 -1.6988 3.4702 8 7 2.7273 0.1202 4.7327 9 6 3.1871 -0.5569 5.8326 10 1 3.4368 -1.6049 5.7562 11 6 3.3319 0.1052 7.0456 12 7 3.0277 1.3802 7.1387 13 14 3.9577 -0.8175 8.5444 14 1 5.3138 -1.3543 8.2646 15 1 4.0207 0.1074 9.7044 16 1 3.0359 -1.9394 8.8557 17 6 2.0323 -0.7105 -1.2304 18 7 2.5352 -0.1257 -2.2620 19 6 2.9296 -0.8996 -3.2628 20 6 3.5256 -0.3637 -4.5111 21 6 3.7839 1.0003 -4.6334 22 6 4.3429 1.4926 -5.7952 23 6 4.6370 0.6364 -6.8411 24 6 4.3780 -0.7175 -6.7272 25 6 3.8236 -1.2216 -5.5684 26 6 2.7405 -2.2171 -3.0469 27 16 2.0212 -2.4054 -1.4497 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.9173 -1.1205 1.0287 32 1 2.7588 1.0461 2.1182 33 1 1.0870 0.6163 2.5525 34 1 2.5034 1.0616 4.8012 35 1 3.1284 1.8423 7.9855 36 1 3.5502 1.6703 -3.8192 37 1 4.5476 2.5489 -5.8894 38 1 5.0702 1.0268 -7.7502 39 1 4.6100 -1.3814 -7.5468 40 1 3.6221 -2.2790 -5.4803 41 1 2.9909 -3.0156 -3.7295 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184521486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:37 Heat of formation + Delta-G solvation = 34.465792 kcal Electronic energy + Delta-G solvation = -23961.871755 eV Core-core repulsion = 20354.288397 eV Total energy + Delta-G solvation = -3607.583357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.38904 -38.86025 -38.30152 -36.35863 -33.92928 -32.48504 -31.29157 -31.23089 -30.58640 -28.85154 -26.76337 -25.58471 -24.21352 -23.00652 -22.52958 -21.02795 -19.99277 -19.20574 -18.22048 -17.87008 -16.97361 -16.36911 -15.60638 -15.48236 -15.43567 -14.95567 -14.77589 -14.48526 -14.28616 -13.88816 -13.79084 -13.67927 -13.36549 -13.16021 -12.84525 -12.64284 -12.10451 -11.97559 -11.91690 -11.80735 -11.49850 -11.39305 -11.30035 -11.16512 -10.99753 -10.44700 -10.22259 -9.86008 -9.76378 -9.51119 -9.50770 -9.21829 -8.53765 -8.32378 -8.20903 -7.97635 -6.42416 -3.83347 0.32068 1.08085 1.14275 1.24756 1.68403 2.69224 3.19860 3.25741 3.29922 3.57496 3.68601 3.88813 4.12372 4.32441 4.50629 4.58018 4.69685 4.84443 4.97325 5.00685 5.06362 5.16746 5.22662 5.26223 5.30748 5.39888 5.57158 5.65566 5.73813 5.77753 5.81152 5.89772 5.90938 6.16636 6.19249 6.25080 6.26009 6.29573 6.68258 7.01888 7.40431 7.54433 7.60785 8.04613 8.59748 9.16643 9.52653 10.03787 10.75142 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.002076 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.676589 B =13482.533716 C =13760.692075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.157 3.843 3 H 0.075 0.925 4 N -0.661 5.661 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.562 5.562 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.901 5.901 13 Si 0.931 3.069 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.048 3.952 18 N -0.466 5.466 19 C 0.103 3.897 20 C -0.016 4.016 21 C -0.087 4.087 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.105 4.105 26 C -0.270 4.270 27 S 0.193 5.807 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.352 0.648 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.393 0.607 35 H 0.272 0.728 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.513 -0.668 -25.819 25.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 H 0.093 0.907 4 N -0.295 5.295 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.467 6.467 8 N -0.198 5.198 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.542 5.542 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.231 4.231 18 N -0.180 5.180 19 C -0.029 4.029 20 C -0.019 4.019 21 C -0.106 4.106 22 C -0.140 4.140 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.124 4.124 26 C -0.410 4.410 27 S 0.450 5.550 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.172 0.828 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.226 0.774 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.234 -1.876 -24.845 25.016 hybrid contribution 1.361 1.090 -0.189 1.754 sum -0.873 -0.786 -25.034 25.062 Atomic orbital electron populations 1.21843 0.92327 1.03142 1.02197 1.20113 0.96493 0.95653 0.83347 0.90732 1.60362 1.35129 1.31930 1.02123 1.21751 1.01794 0.93835 0.90808 1.19713 0.85130 0.88191 0.84365 1.90530 1.55352 1.16077 1.84703 1.41839 1.57650 1.12445 1.07903 1.19654 1.40085 0.96434 0.86774 0.87936 1.25270 0.97619 0.95789 0.99260 1.69601 1.48487 1.08854 1.27296 0.85908 0.79422 0.78836 0.79998 1.19918 1.20984 1.19864 1.27025 1.01799 0.95487 0.98831 1.66114 1.12976 1.38632 1.00264 1.18715 1.01620 0.88458 0.94132 1.18082 0.99357 0.93588 0.90849 1.21321 0.96868 0.94541 0.97908 1.21158 0.99370 1.00017 0.93489 1.21245 0.99802 0.93689 0.98840 1.21030 0.99724 0.95617 0.97592 1.21129 0.99069 0.99410 0.92823 1.27231 1.10893 1.00582 1.02280 1.84384 1.54566 1.07308 1.08717 0.91001 0.92188 0.91495 0.82810 0.93361 0.89079 0.77413 0.91795 0.84960 0.85748 0.85999 0.85758 0.85831 0.80570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.40 37.16 0.35 -1.22 16 2 C 0.16 2.07 3.12 -68.87 -0.21 1.86 16 3 H 0.07 0.97 7.80 -51.93 -0.40 0.57 16 4 N -0.66 -10.58 5.73 -109.22 -0.63 -11.21 16 5 C 0.05 0.87 5.97 -4.97 -0.03 0.84 16 6 C 0.44 10.27 7.82 -10.98 -0.09 10.18 16 7 O -0.58 -15.63 15.78 5.54 0.09 -15.54 16 8 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 9 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 10 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 13 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 C 0.05 0.63 5.97 -13.55 -0.08 0.55 16 18 N -0.47 -6.42 9.93 -8.42 -0.08 -6.51 16 19 C 0.10 1.28 6.64 -84.62 -0.56 0.72 16 20 C -0.02 -0.18 5.88 -104.89 -0.62 -0.80 16 21 C -0.09 -0.95 9.64 -39.24 -0.38 -1.32 16 22 C -0.12 -1.07 10.03 -39.63 -0.40 -1.47 16 23 C -0.12 -0.91 10.04 -39.52 -0.40 -1.31 16 24 C -0.12 -0.95 10.03 -39.64 -0.40 -1.35 16 25 C -0.11 -0.95 9.48 -39.25 -0.37 -1.32 16 26 C -0.27 -2.92 10.62 29.53 0.31 -2.61 16 27 S 0.19 2.29 22.83 -107.50 -2.45 -0.17 16 28 H 0.07 0.80 7.45 -51.93 -0.39 0.41 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 31 H 0.35 6.01 7.94 -39.29 -0.31 5.70 16 32 H 0.05 0.76 8.05 -51.93 -0.42 0.34 16 33 H 0.09 1.41 7.44 -51.93 -0.39 1.02 16 34 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.13 1.49 7.71 -52.49 -0.40 1.08 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 40 H 0.12 0.87 6.69 -52.48 -0.35 0.52 16 41 H 0.18 1.39 6.92 -52.49 -0.36 1.02 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -31.84 367.12 -9.99 -41.82 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -4.97 Total: 13.14 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.11 Total: -5.21 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.04 Total: -55.57 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.09 Total: -15.54 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.45 Total: -0.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.84 -9.99 -41.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184521486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.290 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds