Wall clock time and date at job start Tue Mar 31 2020 16:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 N 1.46895 * 109.47235 * 120.00233 * 2 1 3 5 5 C 1.46906 * 110.99789 * 274.99821 * 4 2 1 6 6 C 1.50703 * 109.47109 * 179.97438 * 5 4 2 7 7 O 1.21296 * 119.99996 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99978 * 180.02562 * 6 5 4 9 9 C 1.37099 * 119.99848 * 180.02562 * 8 6 5 10 10 H 1.07998 * 120.00405 * 359.97438 * 9 8 6 11 11 C 1.38955 * 119.99710 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00111 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99871 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47071 * 60.00529 * 13 11 9 15 15 H 1.48496 * 109.47153 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47603 * 300.00548 * 13 11 9 17 17 C 1.50701 * 109.47125 * 239.99751 * 2 1 3 18 18 N 1.28806 * 124.75346 * 104.99657 * 17 2 1 19 19 C 1.32516 * 117.12377 * 180.02562 * 18 17 2 20 20 C 1.48348 * 122.96103 * 179.97438 * 19 18 17 21 21 C 1.39363 * 120.12283 * 4.72626 * 20 19 18 22 22 C 1.38014 * 119.87186 * 179.76873 * 21 20 19 23 23 C 1.38332 * 120.12181 * 0.50816 * 22 21 20 24 24 C 1.38323 * 120.24886 * 359.74295 * 23 22 21 25 25 C 1.38001 * 120.12936 * 0.02562 * 24 23 22 26 26 C 1.34837 * 114.07827 * 0.02562 * 19 18 17 27 27 S 1.70915 * 124.75953 * 284.69874 * 17 2 1 28 28 H 1.09002 * 109.47368 * 300.00021 * 1 2 3 29 29 H 1.09003 * 109.47249 * 60.00430 * 1 2 3 30 30 H 1.09009 * 109.47420 * 179.97438 * 1 2 3 31 31 H 1.00899 * 111.00672 * 151.04765 * 4 2 1 32 32 H 1.08992 * 109.47459 * 299.99826 * 5 4 2 33 33 H 1.09004 * 109.47040 * 59.99976 * 5 4 2 34 34 H 0.97002 * 119.99767 * 359.97438 * 8 6 5 35 35 H 0.96996 * 120.00275 * 179.97438 * 12 11 9 36 36 H 1.07998 * 120.06494 * 359.97438 * 21 20 19 37 37 H 1.07998 * 119.93950 * 180.27304 * 22 21 20 38 38 H 1.07998 * 119.86947 * 179.72042 * 23 22 21 39 39 H 1.08000 * 119.93369 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.06751 * 180.02562 * 25 24 23 41 41 H 1.07994 * 126.06901 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5873 -0.5218 3.5560 7 8 2.8678 -1.6988 3.4702 8 7 2.7273 0.1202 4.7327 9 6 3.1871 -0.5569 5.8326 10 1 3.4368 -1.6049 5.7562 11 6 3.3319 0.1052 7.0456 12 7 3.0277 1.3802 7.1387 13 14 3.9577 -0.8175 8.5444 14 1 5.3138 -1.3543 8.2646 15 1 4.0207 0.1074 9.7044 16 1 3.0359 -1.9394 8.8557 17 6 2.0323 -0.7105 -1.2304 18 7 2.5352 -0.1257 -2.2620 19 6 2.9296 -0.8996 -3.2628 20 6 3.5256 -0.3637 -4.5111 21 6 3.7839 1.0003 -4.6334 22 6 4.3429 1.4926 -5.7952 23 6 4.6370 0.6364 -6.8411 24 6 4.3780 -0.7175 -6.7272 25 6 3.8236 -1.2216 -5.5684 26 6 2.7405 -2.2171 -3.0469 27 16 2.0212 -2.4054 -1.4497 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.9173 -1.1205 1.0287 32 1 2.7588 1.0461 2.1182 33 1 1.0870 0.6163 2.5525 34 1 2.5034 1.0616 4.8012 35 1 3.1284 1.8423 7.9855 36 1 3.5502 1.6703 -3.8192 37 1 4.5476 2.5489 -5.8894 38 1 5.0702 1.0268 -7.7502 39 1 4.6100 -1.3814 -7.5468 40 1 3.6221 -2.2790 -5.4803 41 1 2.9909 -3.0156 -3.7295 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184521486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:37 Heat of formation + Delta-G solvation = 13.462112 kcal Electronic energy + Delta-G solvation = -23962.782542 eV Core-core repulsion = 20354.288397 eV Total energy + Delta-G solvation = -3608.494145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.110 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26200 -40.21987 -39.49250 -37.62019 -35.92327 -33.48050 -33.19477 -31.92628 -31.66562 -29.69738 -28.24419 -26.75135 -25.74677 -23.91879 -23.23372 -21.99986 -21.26369 -20.63828 -19.89996 -19.13741 -17.84415 -17.68057 -17.06589 -16.59443 -16.32631 -16.29387 -16.00247 -15.72711 -15.53587 -15.36978 -14.91933 -14.54534 -14.39139 -14.24660 -13.96525 -13.67653 -13.49964 -13.41891 -13.16037 -12.90262 -12.85987 -12.67579 -12.42742 -12.32015 -12.12370 -12.07684 -11.90295 -11.50012 -10.73203 -10.66858 -10.44295 -10.35233 -10.01873 -9.87666 -9.57322 -9.11282 -8.46316 -5.95043 -0.53159 0.29272 0.33566 0.48190 0.76184 1.40137 1.42227 1.53052 1.82999 2.04355 2.27748 2.56171 2.97372 3.07687 3.20854 3.42779 3.63594 3.90514 4.10613 4.13848 4.17636 4.24533 4.26155 4.32155 4.35533 4.44751 4.53805 4.55513 4.70504 4.79822 4.81656 4.91033 5.08161 5.14354 5.26265 5.41182 5.54425 5.57398 5.59649 5.74176 6.02245 6.04851 6.11204 6.59543 6.65348 7.12300 7.55565 8.10513 8.70730 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.002076 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.676589 B =13482.533716 C =13760.692075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.161 3.839 3 H 0.077 0.923 4 N -0.668 5.668 5 C 0.065 3.935 6 C 0.439 3.561 7 O -0.621 6.621 8 N -0.571 5.571 9 C -0.334 4.334 10 H 0.080 0.920 11 C -0.013 4.013 12 N -0.919 5.919 13 Si 0.993 3.007 14 H -0.272 1.272 15 H -0.271 1.271 16 H -0.271 1.271 17 C 0.030 3.970 18 N -0.482 5.482 19 C 0.082 3.918 20 C -0.041 4.041 21 C -0.110 4.110 22 C -0.129 4.129 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.110 4.110 26 C -0.257 4.257 27 S 0.192 5.808 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.343 0.657 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.397 0.603 35 H 0.278 0.722 36 H 0.116 0.884 37 H 0.141 0.859 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.305 -0.767 -27.516 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.049 3.951 3 H 0.095 0.905 4 N -0.302 5.302 5 C -0.067 4.067 6 C 0.226 3.774 7 O -0.507 6.507 8 N -0.209 5.209 9 C -0.463 4.463 10 H 0.098 0.902 11 C -0.213 4.213 12 N -0.560 5.560 13 Si 0.817 3.183 14 H -0.197 1.197 15 H -0.195 1.195 16 H -0.197 1.197 17 C -0.249 4.249 18 N -0.197 5.197 19 C -0.049 4.049 20 C -0.044 4.044 21 C -0.129 4.129 22 C -0.146 4.146 23 C -0.135 4.135 24 C -0.139 4.139 25 C -0.129 4.129 26 C -0.397 4.397 27 S 0.449 5.551 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.162 0.838 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.231 0.769 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.158 0.842 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.160 0.840 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.042 -1.941 -26.562 26.711 hybrid contribution 1.320 1.115 0.192 1.739 sum -0.722 -0.826 -26.370 26.393 Atomic orbital electron populations 1.21824 0.90999 1.03177 1.03055 1.20114 0.97354 0.95373 0.82280 0.90516 1.60373 1.34657 1.32224 1.02922 1.21619 1.03091 0.93486 0.88548 1.20727 0.83374 0.87964 0.85302 1.90499 1.56610 1.18094 1.85535 1.41902 1.58198 1.12609 1.08145 1.19631 1.42189 0.95990 0.88516 0.90230 1.26047 0.97240 0.96639 1.01400 1.69663 1.48481 1.09675 1.28202 0.84987 0.78701 0.77837 0.76809 1.19749 1.19535 1.19668 1.26990 1.02748 0.96189 0.98934 1.66098 1.13202 1.39609 1.00793 1.19051 1.02204 0.89091 0.94511 1.18260 1.00742 0.94172 0.91206 1.21342 0.98426 0.94573 0.98552 1.21398 0.98938 1.01211 0.93098 1.21631 0.98786 0.93717 0.99317 1.21428 0.98505 0.96160 0.97812 1.21401 0.98760 1.00140 0.92570 1.27546 1.09443 1.00816 1.01851 1.84337 1.54694 1.06469 1.09600 0.90468 0.90952 0.91864 0.83791 0.91382 0.86734 0.76903 0.91289 0.86591 0.84165 0.83261 0.82890 0.83989 0.77638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.40 71.98 0.68 -2.24 16 2 C 0.16 4.19 3.12 44.17 0.14 4.33 16 3 H 0.08 1.96 7.80 -2.39 -0.02 1.94 16 4 N -0.67 -21.28 5.73 -499.47 -2.86 -24.14 16 5 C 0.06 2.19 5.97 85.56 0.51 2.70 16 6 C 0.44 20.73 7.82 87.66 0.69 21.42 16 7 O -0.62 -34.17 15.78 -3.08 -0.05 -34.22 16 8 N -0.57 -29.18 5.29 -306.98 -1.62 -30.80 16 9 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 10 H 0.08 4.80 7.16 -2.91 -0.02 4.77 16 11 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 12 N -0.92 -49.55 13.05 21.66 0.28 -49.27 16 13 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 C 0.03 0.79 5.97 88.55 0.53 1.32 16 18 N -0.48 -13.44 9.93 -180.57 -1.79 -15.24 16 19 C 0.08 2.04 6.64 40.95 0.27 2.32 16 20 C -0.04 -0.91 5.88 -20.04 -0.12 -1.03 16 21 C -0.11 -2.40 9.64 22.49 0.22 -2.19 16 22 C -0.13 -2.12 10.03 22.24 0.22 -1.89 16 23 C -0.12 -1.51 10.04 22.31 0.22 -1.29 16 24 C -0.12 -1.55 10.03 22.23 0.22 -1.33 16 25 C -0.11 -1.78 9.48 22.49 0.21 -1.57 16 26 C -0.26 -5.30 10.62 67.04 0.71 -4.59 16 27 S 0.19 4.50 22.83 -56.49 -1.29 3.21 16 28 H 0.08 1.61 7.45 -2.39 -0.02 1.59 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.34 11.91 7.94 -89.69 -0.71 11.20 16 32 H 0.07 2.07 8.05 -2.39 -0.02 2.05 16 33 H 0.11 3.37 7.44 -2.38 -0.02 3.36 16 34 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 35 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 36 H 0.12 2.78 7.71 -2.91 -0.02 2.76 16 37 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.14 1.63 6.69 -2.91 -0.02 1.61 16 41 H 0.21 2.76 6.92 -2.91 -0.02 2.74 16 Total: -1.00 -69.78 367.12 0.12 -69.67 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -0.36 Total: 38.20 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 5.79 Total: -2.38 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -6.00 Total: -119.45 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.05 Total: -34.22 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.29 Total: 3.21 kcal Total: -69.78 0.12 -69.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184521486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.128 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds