Wall clock time and date at job start Tue Mar 31 2020 15:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34406 * 125.74036 * 2 1 4 4 C 1.38280 * 107.36166 * 179.97438 * 3 2 1 5 5 C 1.46971 * 126.44222 * 179.97438 * 4 3 2 6 6 C 1.35063 * 120.00279 * 134.38151 * 5 4 3 7 7 C 1.41794 * 119.99452 * 347.57726 * 6 5 4 8 8 O 1.21765 * 120.00422 * 352.94413 * 7 6 5 9 9 N 1.34783 * 119.99717 * 172.94381 * 7 6 5 10 10 C 1.39992 * 119.99904 * 174.18975 * 9 7 6 11 11 C 1.38729 * 120.07792 * 336.54643 * 10 9 7 12 12 C 1.38186 * 120.01483 * 179.70107 * 11 10 9 13 13 C 1.38550 * 120.17982 * 0.59913 * 12 11 10 14 14 F 1.35104 * 119.92383 * 179.70364 * 13 12 11 15 15 C 1.38350 * 120.15771 * 359.67506 * 13 12 11 16 16 C 1.38729 * 119.97939 * 0.02562 * 15 13 12 17 17 O 1.35779 * 120.08824 * 179.97438 * 16 15 13 18 18 C 1.34804 * 117.00002 * 6.38813 * 17 16 15 19 19 H 1.07999 * 119.99686 * 5.54157 * 18 17 16 20 20 C 1.38632 * 119.99712 * 185.54936 * 18 17 16 21 21 N 1.31568 * 120.00377 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47187 * 89.99757 * 22 20 18 24 24 H 1.48501 * 109.47163 * 209.99626 * 22 20 18 25 25 H 1.48503 * 109.46961 * 329.99662 * 22 20 18 26 26 C 1.41432 * 107.12213 * 0.24021 * 4 3 2 27 27 N 1.30446 * 108.03663 * 359.59275 * 26 4 3 28 28 H 1.09001 * 109.47165 * 89.99909 * 1 2 3 29 29 H 1.09004 * 109.47021 * 209.99618 * 1 2 3 30 30 H 1.08997 * 109.47275 * 329.99587 * 1 2 3 31 31 H 1.08004 * 126.31833 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.00031 * 314.66447 * 5 4 3 33 33 H 1.07993 * 120.00253 * 167.57739 * 6 5 4 34 34 H 0.96999 * 119.99603 * 354.18623 * 9 7 6 35 35 H 1.08004 * 119.99452 * 359.97379 * 11 10 9 36 36 H 1.08004 * 119.91234 * 180.29365 * 12 11 10 37 37 H 1.08000 * 120.00562 * 180.02562 * 15 13 12 38 38 H 0.97000 * 120.00269 * 180.02562 * 21 20 18 39 39 H 1.07997 * 125.98461 * 179.75333 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2501 1.0909 0.0000 4 6 3.5624 0.6549 0.0006 5 6 4.7636 1.5017 0.0003 6 6 5.7868 1.2227 0.8366 7 6 5.6076 0.2898 1.8894 8 8 4.5010 -0.1628 2.1201 9 7 6.6623 -0.0960 2.6346 10 6 6.4678 -0.9210 3.7487 11 6 5.2335 -0.9556 4.3812 12 6 5.0411 -1.7752 5.4771 13 6 6.0820 -2.5548 5.9550 14 9 5.8898 -3.3497 7.0304 15 6 7.3175 -2.5218 5.3333 16 6 7.5161 -1.7060 4.2289 17 8 8.7279 -1.6715 3.6174 18 6 9.6560 -2.5492 4.0480 19 1 9.3929 -3.2966 4.7819 20 6 10.9481 -2.4924 3.5488 21 7 11.2685 -1.5821 2.6545 22 14 12.2344 -3.7083 4.1460 23 1 12.2175 -4.9130 3.2780 24 1 13.5770 -3.0762 4.0895 25 1 11.9311 -4.1022 5.5454 26 6 3.5314 -0.7590 -0.0047 27 7 2.2825 -1.1356 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.9174 2.1185 0.0004 32 1 4.8264 2.3498 -0.6655 33 1 6.7413 1.7101 0.7036 34 1 7.5561 0.1981 2.3990 35 1 4.4216 -0.3452 4.0144 36 1 4.0782 -1.8044 5.9653 37 1 8.1269 -3.1308 5.7077 38 1 12.1724 -1.5426 2.3050 39 1 4.3911 -1.4126 -0.0095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760795764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:16 Heat of formation + Delta-G solvation = 14.738300 kcal Electronic energy + Delta-G solvation = -27282.107899 eV Core-core repulsion = 23107.455918 eV Total energy + Delta-G solvation = -4174.651981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.112 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.83476 -42.08427 -41.48649 -40.18376 -38.03484 -35.64570 -34.87322 -34.29549 -33.49707 -31.18125 -30.72641 -29.70018 -27.51555 -27.31803 -25.04894 -23.88567 -22.92347 -21.86928 -21.75490 -20.25639 -20.15253 -19.35692 -18.40079 -18.19350 -17.17146 -17.03054 -16.79037 -16.55053 -16.28744 -16.02557 -15.87312 -15.51468 -15.39005 -15.21955 -15.05322 -14.94915 -14.37854 -13.97492 -13.89118 -13.72949 -13.53965 -13.42787 -13.33746 -13.07078 -12.92547 -12.60425 -12.34820 -12.14272 -11.68314 -11.58245 -11.22875 -10.84362 -10.78239 -10.52020 -10.21809 -9.53959 -8.78519 -8.60931 -8.50629 -6.15967 -0.02877 0.40819 0.47393 1.11160 1.36948 1.43787 1.52082 1.78780 2.06852 2.13816 2.37559 2.44922 2.77248 3.07420 3.17523 3.45603 3.70309 3.90869 4.04339 4.10983 4.23782 4.27353 4.36562 4.39393 4.48382 4.63535 4.70104 4.72505 4.84955 4.92265 4.97159 5.03304 5.22295 5.30399 5.35017 5.40236 5.55237 5.63287 5.73994 5.93795 6.07540 6.25813 6.65560 6.84160 6.93898 7.32374 7.63075 8.70105 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.003309 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.912937 B = 8458.674695 C = 9879.403101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.377 5.377 3 C 0.088 3.912 4 C -0.244 4.244 5 C 0.063 3.937 6 C -0.256 4.256 7 C 0.538 3.462 8 O -0.548 6.548 9 N -0.654 5.654 10 C 0.075 3.925 11 C -0.065 4.065 12 C -0.203 4.203 13 C 0.114 3.886 14 F -0.147 7.147 15 C -0.263 4.263 16 C 0.125 3.875 17 O -0.203 6.203 18 C -0.416 4.416 19 H 0.096 0.904 20 C -0.008 4.008 21 N -0.903 5.903 22 Si 1.010 2.990 23 H -0.266 1.266 24 H -0.268 1.268 25 H -0.259 1.259 26 C 0.100 3.900 27 N -0.351 5.351 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.222 0.778 32 H 0.177 0.823 33 H 0.153 0.847 34 H 0.416 0.584 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.134 0.866 38 H 0.275 0.725 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.356 9.707 -6.194 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.157 5.157 3 C -0.061 4.061 4 C -0.256 4.256 5 C 0.042 3.958 6 C -0.277 4.277 7 C 0.333 3.667 8 O -0.429 6.429 9 N -0.297 5.297 10 C -0.021 4.021 11 C -0.086 4.086 12 C -0.223 4.223 13 C 0.094 3.906 14 F -0.125 7.125 15 C -0.284 4.284 16 C 0.071 3.929 17 O -0.108 6.108 18 C -0.491 4.491 19 H 0.113 0.887 20 C -0.208 4.208 21 N -0.540 5.540 22 Si 0.830 3.170 23 H -0.191 1.191 24 H -0.192 1.192 25 H -0.183 1.183 26 C -0.087 4.087 27 N -0.172 5.172 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.238 0.762 32 H 0.195 0.805 33 H 0.171 0.829 34 H 0.252 0.748 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.152 0.848 38 H 0.085 0.915 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.845 8.605 -6.334 20.799 hybrid contribution 2.047 -0.397 0.667 2.189 sum -15.798 8.208 -5.667 18.683 Atomic orbital electron populations 1.22185 0.72054 1.05701 1.04686 1.48529 1.07991 1.03373 1.55856 1.23549 0.89467 0.94612 0.98437 1.19564 0.94131 0.92523 1.19368 1.22067 0.87980 0.93709 0.92018 1.21986 1.02804 1.04322 0.98580 1.17934 0.83546 0.81938 0.83329 1.90782 1.24814 1.56526 1.70824 1.43459 1.11877 1.48022 1.26337 1.17218 0.93477 0.98579 0.92805 1.21011 0.95644 0.98684 0.93239 1.20872 0.99239 1.01578 1.00620 1.17452 0.94244 0.93098 0.85843 1.91416 1.95765 1.72254 1.53102 1.20914 0.98330 1.08299 1.00812 1.19118 0.87276 0.94150 0.92334 1.83885 1.17736 1.54579 1.54638 1.21690 0.89880 1.10818 1.26749 0.88698 1.26356 0.98625 0.99723 0.96060 1.70108 1.21199 1.34464 1.28234 0.84694 0.76323 0.76890 0.79054 1.19094 1.19204 1.18271 1.23642 0.94098 0.95207 0.95737 1.76994 1.02779 1.10008 1.27411 0.89092 0.90148 0.86421 0.76199 0.80549 0.82915 0.74817 0.82449 0.83026 0.84811 0.91539 0.82925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 11.44 127.77 1.46 2.54 16 2 N -0.38 -8.29 3.98 -367.44 -1.46 -9.76 16 3 C 0.09 1.61 11.52 84.31 0.97 2.58 16 4 C -0.24 -5.88 4.45 -20.19 -0.09 -5.97 16 5 C 0.06 1.20 10.13 23.83 0.24 1.44 16 6 C -0.26 -6.14 9.81 22.42 0.22 -5.92 16 7 C 0.54 17.91 6.99 85.12 0.59 18.50 16 8 O -0.55 -20.26 9.48 -4.56 -0.04 -20.31 16 9 N -0.65 -24.84 5.29 -310.92 -1.64 -26.48 16 10 C 0.08 3.24 6.47 38.26 0.25 3.48 16 11 C -0.07 -2.56 8.73 22.37 0.20 -2.36 16 12 C -0.20 -7.58 10.02 22.33 0.22 -7.36 16 13 C 0.11 4.66 7.29 22.37 0.16 4.82 16 14 F -0.15 -5.68 17.26 44.97 0.78 -4.90 16 15 C -0.26 -12.09 9.10 22.41 0.20 -11.89 16 16 C 0.12 6.06 6.66 22.69 0.15 6.21 16 17 O -0.20 -11.23 9.15 -22.79 -0.21 -11.44 16 18 C -0.42 -23.08 9.43 67.91 0.64 -22.44 16 19 H 0.10 5.01 5.31 -2.91 -0.02 4.99 16 20 C -0.01 -0.42 5.49 84.83 0.47 0.05 16 21 N -0.90 -51.18 13.67 21.61 0.30 -50.89 16 22 Si 1.01 41.45 29.55 68.60 2.03 43.48 16 23 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 25 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 26 C 0.10 3.13 9.13 85.69 0.78 3.91 16 27 N -0.35 -11.04 12.49 -56.18 -0.70 -11.75 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.22 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 34 H 0.42 15.72 8.27 -92.71 -0.77 14.95 16 35 H 0.16 5.98 5.69 -2.91 -0.02 5.96 16 36 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.13 6.25 5.73 -2.91 -0.02 6.24 16 38 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.15 5.21 7.94 -2.91 -0.02 5.19 16 Total: -1.00 -75.17 346.78 5.87 -69.30 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: 0.36 Total: 35.14 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 6.47 Total: -12.40 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -3.51 Total: -98.87 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.25 Total: -31.74 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.78 Total: -4.90 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -75.17 5.87 -69.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760795764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.043 kcal (2) G-P(sol) polarization free energy of solvation -75.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds