Wall clock time and date at job start Tue Mar 31 2020 16:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46987 * 2 1 4 4 C 1.53007 * 109.47277 * 240.00281 * 2 1 3 5 5 C 1.50692 * 109.47589 * 119.99925 * 2 1 3 6 6 C 1.38086 * 119.84943 * 240.26030 * 5 2 1 7 7 C 1.39757 * 120.14775 * 180.25560 * 6 5 2 8 8 C 1.47683 * 120.07963 * 179.74062 * 7 6 5 9 9 O 1.21507 * 119.99743 * 359.72409 * 8 7 6 10 10 O 1.34729 * 119.99920 * 179.72426 * 8 7 6 11 11 C 1.34854 * 116.99795 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99981 * 359.72979 * 11 10 8 13 13 C 1.38817 * 120.00064 * 179.97438 * 11 10 8 14 14 N 1.31414 * 119.99773 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 119.99708 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47495 * 89.99895 * 15 13 11 17 17 H 1.48501 * 109.46931 * 209.99568 * 15 13 11 18 18 H 1.48498 * 109.47481 * 329.99617 * 15 13 11 19 19 C 1.39409 * 119.84184 * 359.46260 * 7 6 5 20 20 C 1.39326 * 119.69339 * 0.27848 * 19 7 6 21 21 C 1.47743 * 120.07837 * 179.97438 * 20 19 7 22 22 O 1.21465 * 120.00151 * 180.02562 * 21 20 19 23 23 O 1.34711 * 119.99446 * 0.02562 * 21 20 19 24 24 C 1.45206 * 116.99875 * 179.97438 * 23 21 20 25 25 C 1.47194 * 109.47531 * 179.97438 * 24 23 21 26 26 N 9.56042 * 98.06051 * 138.44727 * 2 1 3 27 27 C 1.38068 * 119.84327 * 59.99891 * 5 2 1 28 28 H 1.08995 * 109.46925 * 299.99462 * 1 2 3 29 29 H 1.09000 * 109.47247 * 60.00246 * 1 2 3 30 30 H 1.09005 * 109.46523 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47150 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46931 * 300.00508 * 3 2 1 33 33 H 1.09003 * 109.47126 * 59.99885 * 3 2 1 34 34 H 1.08990 * 109.46890 * 299.99752 * 4 2 1 35 35 H 1.08996 * 109.46724 * 59.99730 * 4 2 1 36 36 H 1.08997 * 109.46722 * 179.97438 * 4 2 1 37 37 H 1.08007 * 119.92259 * 359.97438 * 6 5 2 38 38 H 0.97000 * 119.99089 * 180.02562 * 14 13 11 39 39 H 1.08002 * 120.15865 * 180.29677 * 19 7 6 40 40 H 1.09009 * 109.47050 * 300.00219 * 24 23 21 41 41 H 1.08995 * 109.46998 * 59.99247 * 24 23 21 42 42 H 1.08000 * 119.91992 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2304 6 6 2.8217 -0.0347 2.1399 7 6 3.2955 -0.6889 3.2804 8 6 4.1442 0.0336 4.2493 9 8 4.4355 1.1967 4.0528 10 8 4.5955 -0.5971 5.3510 11 6 5.3660 0.1196 6.1943 12 1 5.5988 1.1499 5.9694 13 6 5.8641 -0.4684 7.3490 14 7 6.6154 0.2299 8.1705 15 14 5.4676 -2.2527 7.7341 16 1 6.5057 -3.1306 7.1367 17 1 5.4419 -2.4475 9.2060 18 1 4.1400 -2.5986 7.1658 19 6 2.9602 -2.0234 3.5042 20 6 2.1590 -2.6973 2.5849 21 6 1.7989 -4.1118 2.8134 22 8 1.1007 -4.6981 2.0108 23 8 2.2450 -4.7513 3.9119 24 6 1.8514 -6.1399 4.0718 25 6 2.4263 -6.6726 5.3177 26 7 2.8705 -7.0838 6.2789 27 6 1.6969 -2.0322 1.4457 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 3.0772 1.0004 1.9672 38 1 6.9637 -0.1812 8.9770 39 1 3.3195 -2.5326 4.3863 40 1 0.7642 -6.2067 4.1151 41 1 2.2176 -6.7210 3.2255 42 1 1.0761 -2.5535 0.7321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006345842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:07 Heat of formation + Delta-G solvation = -112.943926 kcal Electronic energy + Delta-G solvation = -27742.356699 eV Core-core repulsion = 23653.335555 eV Total energy + Delta-G solvation = -4089.021144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.00389 -39.97680 -38.94137 -37.35292 -36.39434 -36.29921 -35.40510 -32.45132 -31.66864 -30.57172 -29.27802 -27.72350 -27.42462 -25.85984 -24.18086 -23.55313 -22.22102 -20.21465 -19.20762 -18.75367 -18.15806 -17.67680 -17.21682 -16.98955 -16.34936 -15.78036 -15.23089 -15.01406 -14.92804 -14.81032 -14.59911 -14.36600 -14.00112 -13.82170 -13.65976 -13.28968 -12.94855 -12.64722 -12.61346 -12.53281 -12.45577 -12.24043 -12.17496 -12.00710 -11.82734 -11.75718 -11.36768 -11.19249 -11.13674 -11.10067 -10.80860 -10.70108 -10.59365 -10.45070 -9.80811 -9.35879 -9.10524 -8.87489 -8.77246 -6.49490 -4.20544 0.51032 0.99217 1.58068 2.21538 2.37854 2.92012 3.09182 3.20649 3.26171 3.33051 3.50714 3.88382 3.99055 4.16221 4.34447 4.36779 4.64067 4.69082 4.73745 4.82884 4.92875 5.02562 5.03978 5.16099 5.25594 5.38527 5.44094 5.49515 5.59542 5.61105 5.72472 5.74499 5.85656 5.88475 5.99303 6.01961 6.10144 6.13246 6.16659 6.37231 6.55784 6.69427 7.09055 7.39420 7.60126 7.91947 8.50182 8.87865 9.54579 10.57826 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.007681 B = 0.005122 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3644.398772 B = 5464.810914 C = 8912.840346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.025 4.025 3 C -0.150 4.150 4 C -0.141 4.141 5 C -0.095 4.095 6 C -0.031 4.031 7 C -0.094 4.094 8 C 0.441 3.559 9 O -0.534 6.534 10 O -0.239 6.239 11 C -0.373 4.373 12 H 0.113 0.887 13 C 0.069 3.931 14 N -0.863 5.863 15 Si 0.899 3.101 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.257 1.257 19 C -0.024 4.024 20 C -0.139 4.139 21 C 0.527 3.473 22 O -0.503 6.503 23 O -0.344 6.344 24 C 0.169 3.831 25 C 0.204 3.796 26 N -0.388 5.388 27 C -0.035 4.035 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.149 0.851 38 H 0.282 0.718 39 H 0.151 0.849 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 -7.967 -17.153 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 C -0.207 4.207 4 C -0.198 4.198 5 C -0.095 4.095 6 C -0.049 4.049 7 C -0.096 4.096 8 C 0.289 3.711 9 O -0.431 6.431 10 O -0.147 6.147 11 C -0.448 4.448 12 H 0.131 0.869 13 C -0.137 4.137 14 N -0.501 5.501 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.181 1.181 19 C -0.043 4.043 20 C -0.141 4.141 21 C 0.373 3.627 22 O -0.392 6.392 23 O -0.259 6.259 24 C 0.093 3.907 25 C -0.115 4.115 26 N -0.067 5.067 27 C -0.053 4.053 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.166 0.834 38 H 0.093 0.907 39 H 0.169 0.831 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.693 -8.479 -15.774 21.951 hybrid contribution -0.144 -0.661 0.118 0.687 sum -12.837 -9.141 -15.656 22.214 Atomic orbital electron populations 1.21927 0.93455 1.02211 1.02188 1.19474 0.95828 0.95235 0.91960 1.22021 1.01741 0.94560 1.02340 1.21924 1.01564 1.00192 0.96093 1.19631 0.99385 0.93532 0.96922 1.21618 0.91883 1.00898 0.90470 1.19352 1.00568 0.93806 0.95826 1.20296 0.82588 0.85711 0.82521 1.90681 1.58603 1.17505 1.76290 1.83521 1.57553 1.43873 1.29755 1.20723 1.25728 0.98033 1.00342 0.86929 1.24562 0.94994 0.99813 0.94284 1.69584 1.31159 1.37393 1.11988 0.86302 0.80422 0.82964 0.77890 1.19583 1.20493 1.18067 1.21878 0.91569 0.93301 0.97548 1.18825 1.06039 0.90218 0.98986 1.21078 0.76449 0.87290 0.77929 1.90841 1.35811 1.67622 1.44907 1.86636 1.70020 1.25137 1.44151 1.19931 1.00633 0.80188 0.89981 1.28300 0.94075 0.94990 0.94093 1.81284 1.07489 1.07518 1.10388 1.21114 0.96000 0.93522 0.94655 0.92198 0.92148 0.92298 0.91802 0.92122 0.91801 0.92295 0.92150 0.92199 0.83373 0.90726 0.83150 0.86172 0.86174 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.28 37.16 0.31 -0.80 16 2 C -0.02 -0.23 0.85 -155.66 -0.13 -0.36 16 3 C -0.15 -1.35 7.13 37.16 0.26 -1.09 16 4 C -0.14 -1.11 8.29 37.16 0.31 -0.80 16 5 C -0.09 -1.10 4.76 -104.74 -0.50 -1.60 16 6 C -0.03 -0.44 8.52 -39.07 -0.33 -0.78 16 7 C -0.09 -1.66 5.87 -105.04 -0.62 -2.28 16 8 C 0.44 10.26 7.83 34.59 0.27 10.53 16 9 O -0.53 -13.77 15.58 -19.27 -0.30 -14.07 16 10 O -0.24 -6.16 7.82 -21.63 -0.17 -6.33 16 11 C -0.37 -10.84 10.11 30.95 0.31 -10.52 16 12 H 0.11 3.59 7.09 -52.49 -0.37 3.21 16 13 C 0.07 1.94 5.50 -17.52 -0.10 1.84 16 14 N -0.86 -25.07 13.96 55.49 0.77 -24.30 16 15 Si 0.90 21.41 28.62 -169.99 -4.86 16.55 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 19 C -0.02 -0.38 9.18 -38.74 -0.36 -0.74 16 20 C -0.14 -1.82 5.87 -105.03 -0.62 -2.43 16 21 C 0.53 6.32 7.90 34.62 0.27 6.60 16 22 O -0.50 -6.16 16.13 -19.24 -0.31 -6.47 16 23 O -0.34 -3.96 9.42 -40.52 -0.38 -4.35 16 24 C 0.17 1.31 5.95 34.37 0.20 1.51 16 25 C 0.20 2.22 15.83 -20.76 -0.33 1.89 16 26 N -0.39 -5.50 18.54 42.15 0.78 -4.72 16 27 C -0.03 -0.39 8.25 -39.07 -0.32 -0.72 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 31 H 0.06 0.61 7.52 -51.93 -0.39 0.22 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.61 7.49 -51.93 -0.39 0.22 16 34 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.15 2.16 5.44 -52.48 -0.29 1.88 16 38 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.15 2.49 7.15 -52.49 -0.38 2.12 16 40 H 0.12 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.14 1.36 6.65 -52.49 -0.35 1.01 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -33.63 372.85 -5.23 -38.86 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.02 Total: -1.06 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.36 Total: 0.26 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 1.56 Total: -29.02 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.16 Total: -31.22 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.86 Total: 16.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.63 -5.23 -38.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006345842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.085 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds