Wall clock time and date at job start Tue Mar 31 2020 16:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46987 * 2 1 4 4 C 1.53007 * 109.47277 * 240.00281 * 2 1 3 5 5 C 1.50692 * 109.47589 * 119.99925 * 2 1 3 6 6 C 1.38086 * 119.84943 * 240.26030 * 5 2 1 7 7 C 1.39757 * 120.14775 * 180.25560 * 6 5 2 8 8 C 1.47683 * 120.07963 * 179.74062 * 7 6 5 9 9 O 1.21507 * 119.99743 * 359.72409 * 8 7 6 10 10 O 1.34729 * 119.99920 * 179.72426 * 8 7 6 11 11 C 1.34854 * 116.99795 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99981 * 359.72979 * 11 10 8 13 13 C 1.38817 * 120.00064 * 179.97438 * 11 10 8 14 14 N 1.31414 * 119.99773 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 119.99708 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47495 * 89.99895 * 15 13 11 17 17 H 1.48501 * 109.46931 * 209.99568 * 15 13 11 18 18 H 1.48498 * 109.47481 * 329.99617 * 15 13 11 19 19 C 1.39409 * 119.84184 * 359.46260 * 7 6 5 20 20 C 1.39326 * 119.69339 * 0.27848 * 19 7 6 21 21 C 1.47743 * 120.07837 * 179.97438 * 20 19 7 22 22 O 1.21465 * 120.00151 * 180.02562 * 21 20 19 23 23 O 1.34711 * 119.99446 * 0.02562 * 21 20 19 24 24 C 1.45206 * 116.99875 * 179.97438 * 23 21 20 25 25 C 1.47194 * 109.47531 * 179.97438 * 24 23 21 26 26 N 9.56042 * 98.06051 * 138.44727 * 2 1 3 27 27 C 1.38068 * 119.84327 * 59.99891 * 5 2 1 28 28 H 1.08995 * 109.46925 * 299.99462 * 1 2 3 29 29 H 1.09000 * 109.47247 * 60.00246 * 1 2 3 30 30 H 1.09005 * 109.46523 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47150 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46931 * 300.00508 * 3 2 1 33 33 H 1.09003 * 109.47126 * 59.99885 * 3 2 1 34 34 H 1.08990 * 109.46890 * 299.99752 * 4 2 1 35 35 H 1.08996 * 109.46724 * 59.99730 * 4 2 1 36 36 H 1.08997 * 109.46722 * 179.97438 * 4 2 1 37 37 H 1.08007 * 119.92259 * 359.97438 * 6 5 2 38 38 H 0.97000 * 119.99089 * 180.02562 * 14 13 11 39 39 H 1.08002 * 120.15865 * 180.29677 * 19 7 6 40 40 H 1.09009 * 109.47050 * 300.00219 * 24 23 21 41 41 H 1.08995 * 109.46998 * 59.99247 * 24 23 21 42 42 H 1.08000 * 119.91992 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2304 6 6 2.8217 -0.0347 2.1399 7 6 3.2955 -0.6889 3.2804 8 6 4.1442 0.0336 4.2493 9 8 4.4355 1.1967 4.0528 10 8 4.5955 -0.5971 5.3510 11 6 5.3660 0.1196 6.1943 12 1 5.5988 1.1499 5.9694 13 6 5.8641 -0.4684 7.3490 14 7 6.6154 0.2299 8.1705 15 14 5.4676 -2.2527 7.7341 16 1 6.5057 -3.1306 7.1367 17 1 5.4419 -2.4475 9.2060 18 1 4.1400 -2.5986 7.1658 19 6 2.9602 -2.0234 3.5042 20 6 2.1590 -2.6973 2.5849 21 6 1.7989 -4.1118 2.8134 22 8 1.1007 -4.6981 2.0108 23 8 2.2450 -4.7513 3.9119 24 6 1.8514 -6.1399 4.0718 25 6 2.4263 -6.6726 5.3177 26 7 2.8705 -7.0838 6.2789 27 6 1.6969 -2.0322 1.4457 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 3.0772 1.0004 1.9672 38 1 6.9637 -0.1812 8.9770 39 1 3.3195 -2.5326 4.3863 40 1 0.7642 -6.2067 4.1151 41 1 2.2176 -6.7210 3.2255 42 1 1.0761 -2.5535 0.7321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006345842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:06 Heat of formation + Delta-G solvation = -131.773720 kcal Electronic energy + Delta-G solvation = -27743.173220 eV Core-core repulsion = 23653.335555 eV Total energy + Delta-G solvation = -4089.837665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.01793 -41.34795 -40.41368 -38.22674 -37.61039 -37.25953 -37.11481 -34.58863 -32.86341 -31.62284 -30.05833 -28.59045 -28.00842 -27.74719 -25.21438 -24.92272 -23.41577 -21.39088 -20.48574 -20.23719 -19.58584 -18.73715 -18.48493 -17.77828 -17.76549 -16.89531 -16.81761 -16.65334 -16.34517 -15.80757 -15.70738 -15.48447 -15.10644 -14.76319 -14.63861 -14.40720 -14.23389 -14.17990 -13.95034 -13.52785 -13.40086 -13.32466 -13.23694 -13.05445 -12.87971 -12.68759 -12.51774 -12.46889 -12.40475 -12.09248 -11.93643 -11.84319 -11.81358 -11.64146 -11.52990 -11.25802 -10.91590 -10.29188 -9.96436 -8.63259 -6.46581 -0.59793 -0.22870 0.74935 1.13899 1.27344 1.30295 1.44710 1.56579 1.73102 2.07643 2.15503 2.23097 2.58912 2.74914 2.90050 3.39379 3.52015 3.75671 3.92888 3.99464 4.07406 4.09725 4.14277 4.20832 4.27685 4.35222 4.50129 4.68329 4.82859 4.87594 4.93177 4.98086 5.00210 5.04212 5.11436 5.12121 5.21978 5.28066 5.36645 5.42304 5.52999 5.54684 5.58556 5.81485 6.28536 6.41549 6.50208 6.72983 7.47269 8.49205 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.007681 B = 0.005122 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3644.398772 B = 5464.810914 C = 8912.840346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.024 4.024 3 C -0.153 4.153 4 C -0.140 4.140 5 C -0.082 4.082 6 C -0.030 4.030 7 C -0.124 4.124 8 C 0.449 3.551 9 O -0.567 6.567 10 O -0.247 6.247 11 C -0.402 4.402 12 H 0.064 0.936 13 C 0.027 3.973 14 N -0.907 5.907 15 Si 0.966 3.034 16 H -0.261 1.261 17 H -0.265 1.265 18 H -0.249 1.249 19 C -0.024 4.024 20 C -0.136 4.136 21 C 0.537 3.463 22 O -0.499 6.499 23 O -0.361 6.361 24 C 0.167 3.833 25 C 0.232 3.768 26 N -0.453 5.453 27 C -0.009 4.009 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.142 0.858 38 H 0.291 0.709 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.289 -10.801 -20.291 28.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 C -0.210 4.210 4 C -0.197 4.197 5 C -0.082 4.082 6 C -0.048 4.048 7 C -0.125 4.125 8 C 0.298 3.702 9 O -0.464 6.464 10 O -0.156 6.156 11 C -0.478 4.478 12 H 0.082 0.918 13 C -0.175 4.175 14 N -0.547 5.547 15 Si 0.786 3.214 16 H -0.185 1.185 17 H -0.190 1.190 18 H -0.172 1.172 19 C -0.042 4.042 20 C -0.137 4.137 21 C 0.383 3.617 22 O -0.388 6.388 23 O -0.277 6.277 24 C 0.091 3.909 25 C -0.086 4.086 26 N -0.133 5.133 27 C -0.027 4.027 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.159 0.841 38 H 0.101 0.899 39 H 0.157 0.843 40 H 0.172 0.828 41 H 0.172 0.828 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.635 -11.304 -18.928 27.027 hybrid contribution 0.625 0.288 0.814 1.066 sum -15.010 -11.016 -18.114 25.976 Atomic orbital electron populations 1.21939 0.91900 1.03112 1.02727 1.19583 0.96916 0.94773 0.91106 1.22049 1.01063 0.95049 1.02807 1.21937 1.01071 1.00849 0.95814 1.19939 0.97640 0.93710 0.96921 1.21657 0.92224 1.00806 0.90086 1.19055 1.02445 0.94894 0.96096 1.21508 0.81093 0.85613 0.81973 1.90649 1.59565 1.19345 1.76838 1.83538 1.58160 1.43406 1.30502 1.20357 1.28370 0.96763 1.02311 0.91768 1.25389 0.94258 1.04386 0.93445 1.69663 1.32519 1.39599 1.12879 0.85321 0.80667 0.77008 0.78406 1.18519 1.18972 1.17228 1.21726 0.92189 0.92325 0.98001 1.18946 1.05004 0.91156 0.98574 1.20610 0.76423 0.86620 0.78079 1.90852 1.35666 1.67413 1.44852 1.86581 1.70190 1.27073 1.43868 1.20499 1.02467 0.78541 0.89376 1.28849 0.92409 0.93434 0.93871 1.81312 1.09762 1.09639 1.12543 1.21496 0.94232 0.93016 0.93960 0.93088 0.90363 0.91175 0.92976 0.90086 0.92970 0.91170 0.90367 0.93086 0.84079 0.89896 0.84299 0.82822 0.82808 0.81075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.28 71.98 0.60 -1.03 16 2 C -0.02 -0.35 0.85 -52.93 -0.05 -0.40 16 3 C -0.15 -2.49 7.13 71.98 0.51 -1.98 16 4 C -0.14 -1.62 8.29 71.98 0.60 -1.03 16 5 C -0.08 -1.69 4.76 -19.94 -0.09 -1.78 16 6 C -0.03 -0.85 8.52 22.60 0.19 -0.66 16 7 C -0.12 -4.43 5.87 -20.13 -0.12 -4.55 16 8 C 0.45 22.02 7.83 70.32 0.55 22.57 16 9 O -0.57 -31.25 15.58 19.81 0.31 -30.95 16 10 O -0.25 -13.38 7.82 11.37 0.09 -13.29 16 11 C -0.40 -24.91 10.11 67.96 0.69 -24.22 16 12 H 0.06 4.48 7.09 -2.91 -0.02 4.46 16 13 C 0.03 1.56 5.50 84.89 0.47 2.03 16 14 N -0.91 -55.06 13.96 21.64 0.30 -54.75 16 15 Si 0.97 44.93 28.62 68.60 1.96 46.89 16 16 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.25 -11.12 7.11 99.48 0.71 -10.42 16 19 C -0.02 -0.72 9.18 22.81 0.21 -0.51 16 20 C -0.14 -3.11 5.87 -20.13 -0.12 -3.23 16 21 C 0.54 10.71 7.90 70.34 0.56 11.26 16 22 O -0.50 -9.57 16.13 19.95 0.32 -9.25 16 23 O -0.36 -7.09 9.42 -56.20 -0.53 -7.62 16 24 C 0.17 1.89 5.95 70.17 0.42 2.30 16 25 C 0.23 4.52 15.83 89.44 1.42 5.93 16 26 N -0.45 -12.37 18.54 20.00 0.37 -12.00 16 27 C -0.01 -0.17 8.25 22.60 0.19 0.01 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.68 7.37 -2.38 -0.02 0.66 16 31 H 0.05 0.97 7.52 -2.39 -0.02 0.95 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.97 7.49 -2.39 -0.02 0.95 16 34 H 0.07 0.68 7.37 -2.39 -0.02 0.66 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.14 4.25 5.44 -2.91 -0.02 4.23 16 38 H 0.29 15.95 8.31 -92.71 -0.77 15.18 16 39 H 0.14 4.56 7.15 -2.91 -0.02 4.54 16 40 H 0.15 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.17 2.28 6.65 -2.91 -0.02 2.26 16 Total: -1.00 -79.29 372.85 9.90 -69.39 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.07 Total: 6.85 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 6.01 Total: 4.72 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: 0.67 Total: -66.75 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: 0.19 Total: -61.11 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.96 Total: 46.89 kcal Total: -79.29 9.90 -69.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006345842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.385 kcal (2) G-P(sol) polarization free energy of solvation -79.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds