Wall clock time and date at job start Tue Mar 31 2020 18:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46893 * 2 1 4 4 O 1.45197 * 109.46955 * 119.99989 * 2 1 3 5 5 C 1.34865 * 117.00059 * 269.99967 * 4 2 1 6 6 O 1.21579 * 119.99683 * 0.02562 * 5 4 2 7 7 C 1.46807 * 120.00129 * 180.02562 * 5 4 2 8 8 C 1.35887 * 125.14233 * 179.71832 * 7 5 4 9 9 C 1.46218 * 106.07619 * 179.91472 * 8 7 5 10 10 C 1.39725 * 134.17951 * 180.02562 * 9 8 7 11 11 C 1.36611 * 119.70572 * 180.24695 * 10 9 8 12 12 C 1.38838 * 120.44949 * 0.03936 * 11 10 9 13 13 C 1.37797 * 120.74762 * 0.02562 * 12 11 10 14 14 C 1.39034 * 119.85472 * 359.97438 * 13 12 11 15 15 O 1.34711 * 133.23553 * 180.02562 * 14 13 12 16 16 C 1.50690 * 109.46928 * 240.00046 * 2 1 3 17 17 O 1.21286 * 120.00182 * 254.96771 * 16 2 1 18 18 N 1.34779 * 120.00348 * 74.97234 * 16 2 1 19 19 C 1.46497 * 119.99632 * 4.87426 * 18 16 2 20 20 C 1.46503 * 120.00281 * 184.87104 * 18 16 2 21 21 C 1.50700 * 109.46492 * 90.00010 * 20 18 16 22 22 H 1.08001 * 120.00725 * 0.02562 * 21 20 18 23 23 C 1.37882 * 119.99502 * 179.97438 * 21 20 18 24 24 N 1.31513 * 119.99989 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99794 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47313 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46853 * 120.00301 * 25 23 21 28 28 H 1.48503 * 109.47219 * 240.00299 * 25 23 21 29 29 H 1.08995 * 109.47260 * 56.95020 * 1 2 3 30 30 H 1.08999 * 109.47154 * 176.95473 * 1 2 3 31 31 H 1.09003 * 109.47368 * 296.95308 * 1 2 3 32 32 H 1.08005 * 126.96331 * 0.02562 * 8 7 5 33 33 H 1.08003 * 120.14503 * 0.28780 * 10 9 8 34 34 H 1.08010 * 119.77402 * 180.02562 * 11 10 9 35 35 H 1.07995 * 119.62907 * 179.97438 * 12 11 10 36 36 H 1.08000 * 120.07575 * 179.97438 * 13 12 11 37 37 H 1.09002 * 109.47517 * 84.69932 * 19 18 16 38 38 H 1.09004 * 109.47121 * 204.69304 * 19 18 16 39 39 H 1.08995 * 109.47253 * 324.69688 * 19 18 16 40 40 H 1.08997 * 109.46825 * 209.99778 * 20 18 16 41 41 H 1.08997 * 109.47029 * 330.00836 * 20 18 16 42 42 H 0.97003 * 119.99352 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2181 0.0676 2.2863 6 8 1.9969 1.2627 2.2555 7 6 2.7072 -0.5569 3.5216 8 6 2.9534 0.0997 4.6856 9 6 3.4181 -0.9137 5.6316 10 6 3.8244 -0.8847 6.9682 11 6 4.2166 -2.0405 7.5818 12 6 4.2149 -3.2420 6.8861 13 6 3.8193 -3.2918 5.5672 14 6 3.4157 -2.1287 4.9212 15 8 2.9860 -1.8689 3.6712 16 6 2.0323 -0.7104 -1.2304 17 8 2.4913 -1.8294 -1.1398 18 7 1.9716 -0.1023 -2.4317 19 6 1.5173 1.2872 -2.5271 20 6 2.3599 -0.8307 -3.6420 21 6 1.1543 -1.5291 -4.2163 22 1 0.1948 -1.4390 -3.7289 23 6 1.2761 -2.2823 -5.3648 24 7 2.4444 -2.3916 -5.9587 25 14 -0.2181 -3.1486 -6.0764 26 1 -1.4036 -2.8694 -5.2267 27 1 -0.4688 -2.6524 -7.4534 28 1 0.0300 -4.6122 -6.1152 29 1 -0.3633 0.5604 -0.8613 30 1 -0.3633 -1.0262 -0.0546 31 1 -0.3634 0.4658 0.9160 32 1 2.8291 1.1558 4.8743 33 1 3.8275 0.0473 7.5140 34 1 4.5305 -2.0194 8.6151 35 1 4.5281 -4.1477 7.3841 36 1 3.8226 -4.2323 5.0363 37 1 2.3567 1.9575 -2.3418 38 1 1.1187 1.4715 -3.5248 39 1 0.7387 1.4667 -1.7858 40 1 2.7578 -0.1299 -4.3759 41 1 3.1227 -1.5684 -3.3930 42 1 2.5301 -2.9218 -6.7664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007173569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:52 Heat of formation + Delta-G solvation = -75.427670 kcal Electronic energy + Delta-G solvation = -27311.748123 eV Core-core repulsion = 23224.353805 eV Total energy + Delta-G solvation = -4087.394317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.84077 -40.66355 -38.96853 -38.21804 -36.62497 -34.91668 -33.21991 -32.87000 -31.75208 -30.81404 -30.04036 -27.80231 -26.16421 -25.55608 -24.15102 -23.10000 -22.56651 -21.88136 -20.92321 -18.95667 -18.77892 -17.78437 -17.02750 -16.84178 -16.62244 -16.53682 -16.06023 -15.76651 -15.34479 -14.88072 -14.63868 -14.42654 -14.31362 -13.68674 -13.66979 -13.43017 -13.18548 -12.91977 -12.66402 -12.42167 -12.37308 -12.20214 -12.10487 -11.77860 -11.47026 -11.38184 -11.25520 -11.13882 -10.91716 -10.81121 -10.64071 -10.60169 -10.19188 -9.65836 -9.06871 -8.95941 -8.69483 -8.47111 -7.74488 -6.07808 -4.13051 0.09185 0.95248 1.35593 1.87891 2.52917 2.59769 3.20115 3.28155 3.29148 3.36137 3.40020 3.76455 4.14782 4.22501 4.41342 4.47821 4.61624 4.70065 4.80154 4.81348 4.95477 4.99517 5.03724 5.13921 5.26898 5.40729 5.42743 5.61900 5.64418 5.70916 5.83172 5.84306 5.91046 6.01128 6.03157 6.14704 6.16269 6.23198 6.66766 6.95901 7.38010 7.39701 7.47632 7.88177 8.17677 8.26021 8.81392 8.96494 9.52127 11.00367 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.002393 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.586931 B =11695.768119 C =12482.505812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.070 3.930 3 H 0.107 0.893 4 O -0.310 6.310 5 C 0.547 3.453 6 O -0.483 6.483 7 C -0.001 4.001 8 C -0.101 4.101 9 C -0.150 4.150 10 C -0.057 4.057 11 C -0.140 4.140 12 C -0.080 4.080 13 C -0.109 4.109 14 C 0.077 3.923 15 O -0.165 6.165 16 C 0.510 3.490 17 O -0.517 6.517 18 N -0.595 5.595 19 C 0.072 3.928 20 C 0.245 3.755 21 C -0.529 4.529 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.175 0.825 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.037 0.963 41 H 0.046 0.954 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 6.130 25.771 26.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 H 0.124 0.876 4 O -0.225 6.225 5 C 0.391 3.609 6 O -0.373 6.373 7 C -0.049 4.049 8 C -0.121 4.121 9 C -0.151 4.151 10 C -0.075 4.075 11 C -0.158 4.158 12 C -0.098 4.098 13 C -0.128 4.128 14 C 0.028 3.972 15 O -0.066 6.066 16 C 0.294 3.706 17 O -0.392 6.392 18 N -0.329 5.329 19 C -0.072 4.072 20 C 0.127 3.873 21 C -0.568 4.568 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.193 0.807 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.316 5.588 25.346 25.988 hybrid contribution -0.862 -0.228 -0.568 1.057 sum 0.454 5.360 24.778 25.355 Atomic orbital electron populations 1.22197 0.91727 1.04637 1.03722 1.22821 0.96338 0.97426 0.82243 0.87575 1.86801 1.75964 1.40450 1.19247 1.19359 0.74645 0.84466 0.82445 1.90927 1.48498 1.14309 1.83538 1.20599 1.07914 0.82151 0.94253 1.22758 0.99167 1.00363 0.89779 1.19892 1.06685 0.92573 0.95922 1.20369 0.96332 0.99169 0.91648 1.20826 1.02109 0.92251 1.00655 1.21059 0.97353 0.98684 0.92707 1.20101 1.02472 0.95593 0.94589 1.19858 0.98737 0.96050 0.82551 1.84205 1.68392 1.24805 1.29175 1.19688 0.80453 0.86781 0.83724 1.90718 1.44517 1.18685 1.85316 1.48074 1.64496 1.12829 1.07497 1.21873 0.98807 0.82875 1.03645 1.19387 0.96697 0.92069 0.79181 1.21459 0.95289 1.30652 1.09364 0.92272 1.24948 0.96239 0.96219 0.96722 1.69944 1.23071 1.40500 1.19683 0.86424 0.82668 0.79532 0.78687 1.19770 1.20935 1.20825 0.89162 0.90448 0.91151 0.80716 0.85002 0.84962 0.84358 0.84306 0.93359 0.89986 0.92168 0.94546 0.93548 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.29 37.16 0.35 -2.02 16 2 C 0.07 1.19 2.15 -27.89 -0.06 1.13 16 3 H 0.11 1.59 6.40 -51.93 -0.33 1.26 16 4 O -0.31 -5.55 9.47 -48.33 -0.46 -6.01 16 5 C 0.55 8.43 7.91 34.20 0.27 8.70 16 6 O -0.48 -7.42 16.09 -19.32 -0.31 -7.73 16 7 C 0.00 -0.01 7.10 -36.96 -0.26 -0.27 16 8 C -0.10 -1.11 10.81 -37.22 -0.40 -1.51 16 9 C -0.15 -1.58 6.38 -105.19 -0.67 -2.25 16 10 C -0.06 -0.44 10.06 -39.61 -0.40 -0.84 16 11 C -0.14 -0.90 9.98 -39.95 -0.40 -1.30 16 12 C -0.08 -0.54 10.01 -39.52 -0.40 -0.94 16 13 C -0.11 -1.01 10.07 -39.45 -0.40 -1.41 16 14 C 0.08 0.92 7.41 -38.34 -0.28 0.64 16 15 O -0.17 -2.43 10.60 1.95 0.02 -2.41 16 16 C 0.51 11.10 6.97 -10.99 -0.08 11.02 16 17 O -0.52 -13.70 16.12 -13.62 -0.22 -13.92 16 18 N -0.60 -12.71 2.86 -182.96 -0.52 -13.23 16 19 C 0.07 1.12 9.85 59.85 0.59 1.71 16 20 C 0.25 6.41 5.17 -5.19 -0.03 6.38 16 21 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 22 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 25 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.09 1.16 6.02 -51.93 -0.31 0.85 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.18 1.48 8.06 -52.48 -0.42 1.05 16 33 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 34 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 35 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 39 H 0.06 0.77 4.70 -51.93 -0.24 0.53 16 40 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 41 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -35.33 368.70 -7.84 -43.17 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -5.03 Total: -1.94 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -2.59 Total: 5.51 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.21 Total: -38.95 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.97 Total: -30.07 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.33 -7.84 -43.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007173569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.254 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds