Wall clock time and date at job start Tue Mar 31 2020 17:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35954 * 117.00224 * 2 1 4 4 C 1.37987 * 120.05021 * 359.73660 * 3 2 1 5 5 C 1.40295 * 119.69321 * 179.74888 * 4 3 2 6 6 C 1.46348 * 120.10266 * 180.22441 * 5 4 3 7 7 C 1.37961 * 119.99544 * 151.69110 * 6 5 4 8 8 C 1.43191 * 120.00592 * 352.75416 * 7 6 5 9 9 N 6.65744 * 111.55991 * 17.64693 * 2 1 3 10 10 C 1.46958 * 119.99373 * 172.75728 * 7 6 5 11 11 O 1.21566 * 120.00494 * 359.97438 * 10 7 6 12 12 O 1.34838 * 119.99542 * 179.97438 * 10 7 6 13 13 C 1.45200 * 116.99817 * 179.97438 * 12 10 7 14 14 C 1.52997 * 109.47159 * 150.00162 * 13 12 10 15 15 C 1.53002 * 109.46996 * 270.00188 * 13 12 10 16 16 C 1.40315 * 119.79343 * 0.49572 * 5 4 3 17 17 C 1.36526 * 120.09897 * 359.76995 * 16 5 4 18 18 C 1.39148 * 120.31666 * 359.97438 * 17 16 5 19 19 O 1.35536 * 119.89934 * 179.97438 * 18 17 16 20 20 C 1.34724 * 116.99823 * 353.91688 * 19 18 17 21 21 H 1.07998 * 120.00093 * 5.09750 * 20 19 18 22 22 C 1.38771 * 120.00244 * 185.09090 * 20 19 18 23 23 N 1.31478 * 119.99408 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00551 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46765 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47498 * 119.99899 * 24 22 20 27 27 H 1.48504 * 109.46926 * 240.00294 * 24 22 20 28 28 H 1.09005 * 109.47047 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47533 * 59.99834 * 1 2 3 30 30 H 1.09000 * 109.46925 * 299.99066 * 1 2 3 31 31 H 1.08005 * 120.15366 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.00474 * 331.68811 * 6 5 4 33 33 H 1.09000 * 109.47324 * 29.99983 * 13 12 10 34 34 H 1.09000 * 109.47149 * 59.99714 * 14 13 12 35 35 H 1.08999 * 109.47401 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.47225 * 300.00063 * 14 13 12 37 37 H 1.09006 * 109.47106 * 299.99614 * 15 13 12 38 38 H 1.08996 * 109.47232 * 60.00358 * 15 13 12 39 39 H 1.09005 * 109.46786 * 180.02562 * 15 13 12 40 40 H 1.07993 * 119.94393 * 179.75314 * 16 5 4 41 41 H 1.08003 * 119.83644 * 179.97438 * 17 16 5 42 42 H 0.96997 * 119.99795 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2957 2.3693 -0.0055 5 6 1.9405 3.6153 -0.0001 6 6 1.1533 4.8490 -0.0009 7 6 1.6667 5.9951 0.5703 8 6 2.8982 5.9423 1.2989 9 7 3.8754 5.9003 1.8770 10 6 0.9494 7.2702 0.4310 11 8 -0.0959 7.3152 -0.1879 12 8 1.4509 8.3902 0.9898 13 6 0.6895 9.6137 0.8114 14 6 0.9121 10.5328 2.0140 15 6 1.1526 10.3211 -0.4638 16 6 3.3423 3.6749 0.0003 17 6 4.0766 2.5239 0.0002 18 6 3.4416 1.2857 0.0002 19 8 4.1789 0.1484 -0.0004 20 6 5.5131 0.2845 -0.1283 21 1 5.9567 1.2691 -0.1415 22 6 6.3175 -0.8404 -0.2429 23 7 5.7774 -2.0390 -0.2273 24 14 8.1675 -0.6519 -0.4195 25 1 8.5212 0.7905 -0.4098 26 1 8.8450 -1.3358 0.7111 27 1 8.6070 -1.2601 -1.7010 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5137 0.8901 31 1 0.2170 2.3166 -0.0102 32 1 0.1706 4.8624 -0.4487 33 1 -0.3704 9.3733 0.7290 34 1 1.9720 10.7732 2.0964 35 1 0.3402 11.4510 1.8804 36 1 0.5822 10.0288 2.9225 37 1 2.2126 10.5616 -0.3814 38 1 0.9940 9.6663 -1.3206 39 1 0.5813 11.2398 -0.5975 40 1 3.8411 4.6328 0.0004 41 1 5.1554 2.5748 0.0000 42 1 6.3397 -2.8254 -0.3070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007208348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:26 Heat of formation + Delta-G solvation = -74.269380 kcal Electronic energy + Delta-G solvation = -27022.146461 eV Core-core repulsion = 22934.802371 eV Total energy + Delta-G solvation = -4087.344090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -40.47185 -39.91878 -37.90906 -37.61449 -36.70245 -35.79745 -33.40769 -33.11665 -32.51938 -29.93837 -29.15490 -27.52721 -26.90288 -25.92057 -24.51414 -22.62772 -21.82910 -20.92606 -20.87629 -18.92476 -18.44731 -17.55737 -16.85522 -16.60313 -16.04288 -15.60501 -15.34653 -15.03930 -14.86654 -14.55801 -14.27585 -14.10423 -13.89979 -13.81521 -13.59196 -13.38474 -13.03188 -12.72728 -12.67741 -12.54259 -12.31443 -12.25115 -11.94343 -11.93238 -11.84562 -11.57453 -11.22933 -11.17331 -11.11972 -10.88146 -10.79449 -10.67946 -10.61814 -10.44850 -9.81898 -9.48944 -9.04347 -8.18297 -7.13803 -6.86955 -4.30763 0.34510 2.00318 2.12912 2.56948 2.57057 2.95252 2.95993 3.02812 3.13764 3.66968 3.76525 3.80581 4.20804 4.24516 4.56812 4.67224 4.69552 4.72782 4.81361 4.91600 5.11721 5.27483 5.29077 5.39291 5.45267 5.46270 5.47188 5.52523 5.56680 5.69698 5.75374 5.79649 5.90613 5.93252 6.04122 6.14325 6.30142 6.43111 6.61930 6.76792 6.88429 7.05391 7.28752 7.55074 7.71537 7.92638 7.94102 8.55226 9.21590 10.27077 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.002714 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.939778 B =10314.130588 C =11783.479898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.303 6.303 3 C 0.051 3.949 4 C -0.121 4.121 5 C -0.206 4.206 6 C 0.128 3.872 7 C -0.187 4.187 8 C 0.273 3.727 9 N -0.432 5.432 10 C 0.530 3.470 11 O -0.519 6.519 12 O -0.350 6.350 13 C 0.081 3.919 14 C -0.150 4.150 15 C -0.170 4.170 16 C -0.039 4.039 17 C -0.225 4.225 18 C 0.155 3.845 19 O -0.129 6.129 20 C -0.382 4.382 21 H 0.104 0.896 22 C 0.042 3.958 23 N -0.829 5.829 24 Si 0.949 3.051 25 H -0.261 1.261 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.139 0.861 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.244 14.811 -0.416 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.217 6.217 3 C 0.006 3.994 4 C -0.141 4.141 5 C -0.207 4.207 6 C 0.105 3.895 7 C -0.193 4.193 8 C -0.040 4.040 9 N -0.110 5.110 10 C 0.377 3.623 11 O -0.410 6.410 12 O -0.267 6.267 13 C 0.026 3.974 14 C -0.207 4.207 15 C -0.228 4.228 16 C -0.058 4.058 17 C -0.245 4.245 18 C 0.096 3.904 19 O -0.027 6.027 20 C -0.457 4.457 21 H 0.122 0.878 22 C -0.167 4.167 23 N -0.459 5.459 24 Si 0.772 3.228 25 H -0.185 1.185 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.903 14.061 0.314 16.646 hybrid contribution 0.155 0.348 -0.362 0.525 sum -8.748 14.409 -0.048 16.857 Atomic orbital electron populations 1.22945 0.79925 1.03268 1.00526 1.86237 1.19781 1.25956 1.89695 1.17971 0.89200 0.84738 1.07498 1.20843 0.98690 0.90396 1.04165 1.18035 0.92746 0.91197 1.18742 1.23004 0.96203 0.88528 0.81739 1.16822 0.95386 0.92563 1.14531 1.25046 0.92394 0.93484 0.93108 1.81236 1.11212 1.07442 1.11067 1.20396 0.82641 0.83634 0.75604 1.90831 1.23214 1.86325 1.40616 1.86700 1.52258 1.17236 1.70511 1.22709 0.96535 0.81758 0.96349 1.21891 1.03335 0.98512 0.96995 1.22218 1.02511 1.00914 0.97124 1.20988 0.92428 0.98035 0.94311 1.20547 1.00987 0.90590 1.12363 1.18979 0.88286 0.87336 0.95847 1.83923 1.20131 1.26629 1.72042 1.21807 0.78230 0.95560 1.50078 0.87845 1.25559 1.01527 0.93995 0.95618 1.70031 1.37248 0.98077 1.40495 0.85505 0.78946 0.79582 0.78750 1.18466 1.19576 1.19569 0.88868 0.93248 0.93324 0.85271 0.83217 0.89552 0.91420 0.90444 0.91651 0.91575 0.91741 0.90832 0.86415 0.84348 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.30 -6.00 10.28 -34.13 -0.35 -6.35 16 3 C 0.05 1.03 6.70 -39.11 -0.26 0.76 16 4 C -0.12 -1.98 8.79 -38.90 -0.34 -2.32 16 5 C -0.21 -3.35 5.60 -105.08 -0.59 -3.94 16 6 C 0.13 1.72 9.46 -36.42 -0.34 1.37 16 7 C -0.19 -2.70 5.84 -104.55 -0.61 -3.31 16 8 C 0.27 4.54 11.25 -22.47 -0.25 4.28 16 9 N -0.43 -8.00 17.88 41.84 0.75 -7.25 16 10 C 0.53 7.44 7.85 34.26 0.27 7.71 16 11 O -0.52 -7.66 15.57 -19.32 -0.30 -7.96 16 12 O -0.35 -4.65 9.42 -40.87 -0.39 -5.04 16 13 C 0.08 0.82 3.19 -26.73 -0.09 0.74 16 14 C -0.15 -1.17 9.57 37.16 0.36 -0.81 16 15 C -0.17 -1.49 9.55 37.16 0.35 -1.13 16 16 C -0.04 -0.71 8.26 -39.42 -0.33 -1.03 16 17 C -0.23 -4.69 9.09 -39.86 -0.36 -5.05 16 18 C 0.16 3.56 6.67 -38.68 -0.26 3.30 16 19 O -0.13 -3.47 9.52 -13.52 -0.13 -3.60 16 20 C -0.38 -9.88 9.48 30.93 0.29 -9.59 16 21 H 0.10 2.46 5.18 -52.49 -0.27 2.19 16 22 C 0.04 1.07 5.50 -17.51 -0.10 0.97 16 23 N -0.83 -22.43 13.67 55.49 0.76 -21.68 16 24 Si 0.95 18.88 29.55 -169.99 -5.02 13.86 16 25 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 26 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 27 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 30 H 0.05 0.56 7.67 -51.93 -0.40 0.16 16 31 H 0.13 1.64 6.29 -52.48 -0.33 1.31 16 32 H 0.15 1.62 7.61 -52.49 -0.40 1.22 16 33 H 0.09 0.89 7.16 -51.93 -0.37 0.51 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.12 2.08 5.24 -52.49 -0.27 1.81 16 41 H 0.14 2.87 5.61 -52.48 -0.29 2.58 16 42 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -30.59 371.56 -5.18 -35.77 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.83 Total: 3.33 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -1.26 Total: -6.68 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 1.51 Total: -28.93 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.17 Total: -22.95 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.59 -5.18 -35.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007208348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.503 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds