Wall clock time and date at job start Tue Mar 31 2020 16:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46991 * 2 1 4 4 H 1.09000 * 109.47115 * 52.63279 * 3 2 1 5 5 C 1.52996 * 109.47082 * 292.63200 * 3 2 1 6 6 C 1.53004 * 109.47360 * 172.62899 * 3 2 1 7 7 H 1.09000 * 109.47048 * 179.40363 * 6 3 2 8 8 C 1.50692 * 109.47178 * 299.40868 * 6 3 2 9 9 O 1.21214 * 119.99806 * 119.99783 * 8 6 3 10 10 O 1.34311 * 120.00316 * 300.00019 * 8 6 3 11 11 C 1.34919 * 117.00428 * 180.02562 * 10 8 6 12 12 H 1.07998 * 119.99710 * 359.97438 * 11 10 8 13 13 C 1.38759 * 120.00121 * 179.97438 * 11 10 8 14 14 N 1.31436 * 119.99801 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99941 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46979 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47102 * 119.99785 * 15 13 11 18 18 H 1.48501 * 109.46993 * 240.00063 * 15 13 11 19 19 N 1.46501 * 109.46811 * 59.40772 * 6 3 2 20 20 C 1.34529 * 124.46112 * 110.49732 * 19 6 3 21 21 O 1.21453 * 125.70582 * 0.24241 * 20 19 6 22 22 C 1.47807 * 108.58163 * 180.26963 * 20 19 6 23 23 C 1.38573 * 134.29952 * 180.02562 * 22 20 19 24 24 C 1.38609 * 119.72066 * 179.97438 * 23 22 20 25 25 C 1.38233 * 120.45898 * 0.02562 * 24 23 22 26 26 C 1.38609 * 120.46077 * 359.97438 * 25 24 23 27 27 C 1.38566 * 119.72104 * 0.02562 * 26 25 24 28 28 C 1.34519 * 124.46205 * 290.79978 * 19 6 3 29 29 O 1.21456 * 125.71169 * 359.73001 * 28 19 6 30 30 H 1.08993 * 109.47139 * 299.99936 * 1 2 3 31 31 H 1.09004 * 109.46609 * 60.00271 * 1 2 3 32 32 H 1.09004 * 109.46657 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47804 * 240.00256 * 2 1 3 34 34 H 1.09005 * 109.47347 * 119.99673 * 2 1 3 35 35 H 1.09003 * 109.47579 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47209 * 300.00021 * 5 3 2 37 37 H 1.09000 * 109.47315 * 59.99977 * 5 3 2 38 38 H 0.97006 * 119.99920 * 180.02562 * 14 13 11 39 39 H 1.07999 * 120.13539 * 359.97438 * 23 22 20 40 40 H 1.07995 * 119.77056 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.76715 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.13938 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5730 1.9930 0.8167 5 6 1.6866 2.1084 -1.3314 6 6 3.5588 1.4466 0.1851 7 1 3.9233 2.4738 0.1745 8 6 3.9059 0.8039 1.5031 9 8 4.6074 -0.1843 1.5293 10 8 3.4381 1.3259 2.6488 11 6 3.7867 0.7025 3.7934 12 1 4.4147 -0.1755 3.7603 13 6 3.3384 1.1894 5.0129 14 7 2.5745 2.2583 5.0531 15 14 3.8205 0.3258 6.5976 16 1 4.6787 -0.8443 6.2823 17 1 4.5685 1.2687 7.4674 18 1 2.5971 -0.1338 7.3028 19 7 4.1855 0.6948 -0.9050 20 6 4.9275 1.2466 -1.8820 21 8 5.1836 2.4283 -1.9961 22 6 5.3785 0.1742 -2.7938 23 6 6.1495 0.1430 -3.9447 24 6 6.3918 -1.0665 -4.5770 25 6 5.8693 -2.2405 -4.0676 26 6 5.0963 -2.2247 -2.9172 27 6 4.8457 -1.0230 -2.2744 28 6 4.0899 -0.6376 -1.0640 29 8 3.4836 -1.3968 -0.3352 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0503 3.1359 -1.3317 36 1 2.1535 1.5579 -2.1481 37 1 0.6046 2.1055 -1.4632 38 1 2.2614 2.5989 5.9057 39 1 6.5599 1.0572 -4.3474 40 1 6.9929 -1.0917 -5.4738 41 1 6.0655 -3.1766 -4.5690 42 1 4.6911 -3.1451 -2.5235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007822610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:50 Heat of formation + Delta-G solvation = -85.719037 kcal Electronic energy + Delta-G solvation = -29612.402984 eV Core-core repulsion = 25524.562400 eV Total energy + Delta-G solvation = -4087.840585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.43816 -39.45348 -38.48070 -38.30995 -36.33646 -35.36028 -35.04125 -32.15755 -31.88905 -31.30931 -29.69599 -27.86482 -25.30565 -25.03958 -24.13067 -23.19495 -22.10901 -20.75174 -20.42231 -18.99270 -17.81505 -17.68239 -17.18684 -16.99720 -16.20443 -15.83654 -15.26046 -14.97473 -14.82899 -14.58484 -14.46310 -14.31480 -14.26012 -14.15821 -13.71122 -13.34960 -13.10662 -12.87190 -12.54771 -12.39524 -12.02421 -11.89823 -11.79782 -11.57278 -11.41180 -11.21909 -10.98930 -10.48995 -10.44815 -10.38790 -10.28563 -10.19138 -9.91011 -9.79755 -9.56758 -9.40798 -9.34362 -8.86042 -8.58630 -6.42115 -4.09382 0.04637 0.79511 2.04038 2.37480 3.07190 3.12554 3.20213 3.27550 3.43029 3.48039 3.62214 3.92692 4.33596 4.44216 4.46421 4.64462 4.85573 4.91180 5.02286 5.03822 5.15339 5.18847 5.24930 5.51026 5.55601 5.63773 5.70500 5.71729 5.79149 5.85253 5.88979 5.94347 5.96500 6.15604 6.23707 6.29573 6.38173 6.46971 6.61007 6.67797 6.85574 6.89540 7.38313 7.41145 7.88307 7.94580 8.66103 9.06518 9.78988 10.75455 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.004022 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.958701 B = 6960.150945 C = 7404.412655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.097 4.097 4 H 0.108 0.892 5 C -0.144 4.144 6 C 0.164 3.836 7 H 0.129 0.871 8 C 0.393 3.607 9 O -0.535 6.535 10 O -0.205 6.205 11 C -0.378 4.378 12 H 0.096 0.904 13 C 0.044 3.956 14 N -0.863 5.863 15 Si 0.942 3.058 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.276 1.276 19 N -0.554 5.554 20 C 0.577 3.423 21 O -0.470 6.470 22 C -0.139 4.139 23 C -0.047 4.047 24 C -0.104 4.104 25 C -0.097 4.097 26 C -0.051 4.051 27 C -0.124 4.124 28 C 0.567 3.433 29 O -0.418 6.418 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.269 0.731 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 -5.059 -19.659 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.117 4.117 4 H 0.126 0.874 5 C -0.201 4.201 6 C 0.061 3.939 7 H 0.147 0.853 8 C 0.238 3.762 9 O -0.431 6.431 10 O -0.112 6.112 11 C -0.455 4.455 12 H 0.114 0.886 13 C -0.160 4.160 14 N -0.499 5.499 15 Si 0.767 3.233 16 H -0.190 1.190 17 H -0.202 1.202 18 H -0.201 1.201 19 N -0.296 5.296 20 C 0.366 3.634 21 O -0.343 6.343 22 C -0.142 4.142 23 C -0.066 4.066 24 C -0.122 4.122 25 C -0.116 4.116 26 C -0.070 4.070 27 C -0.128 4.128 28 C 0.355 3.645 29 O -0.285 6.285 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.930 -4.921 -19.028 19.748 hybrid contribution 0.340 -0.308 0.909 1.019 sum 2.270 -5.229 -18.118 18.994 Atomic orbital electron populations 1.21805 0.96148 1.01208 1.01420 1.22026 0.95584 0.94667 1.03740 1.21607 0.91213 0.98845 0.99995 0.87442 1.21858 1.01807 1.00420 0.96019 1.20712 0.94644 0.96100 0.82415 0.85340 1.22685 0.82032 0.84826 0.86674 1.90606 1.38622 1.26391 1.87435 1.83842 1.62771 1.51566 1.12983 1.21273 1.32268 1.11703 0.80222 0.88621 1.25311 0.95934 0.96256 0.98537 1.69996 1.32025 1.21240 1.26688 0.85624 0.78583 0.79125 0.80006 1.18963 1.20152 1.20115 1.46185 1.48237 1.09570 1.25603 1.18291 0.76773 0.87717 0.80644 1.90786 1.54397 1.15897 1.73172 1.20611 1.01810 0.94055 0.97733 1.20770 0.94604 0.99092 0.92152 1.21392 0.99119 0.91772 0.99963 1.21424 0.95970 0.98995 0.95166 1.20803 0.95794 0.96656 0.93763 1.20744 1.00452 0.94976 0.96648 1.18040 0.80318 0.81761 0.84374 1.90853 1.36863 1.54745 1.46082 0.92448 0.93245 0.93088 0.91907 0.90045 0.92141 0.93600 0.91643 0.92097 0.84193 0.84319 0.84304 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.71 37.16 0.36 -1.89 16 2 C -0.12 -2.22 3.49 -26.73 -0.09 -2.31 16 3 C -0.10 -1.71 2.18 -90.62 -0.20 -1.90 16 4 H 0.11 2.00 8.09 -51.93 -0.42 1.58 16 5 C -0.14 -2.02 8.83 37.16 0.33 -1.69 16 6 C 0.16 3.27 2.67 -69.08 -0.18 3.08 16 7 H 0.13 2.44 7.63 -51.93 -0.40 2.05 16 8 C 0.39 9.96 5.56 36.00 0.20 10.16 16 9 O -0.53 -14.71 13.21 -26.41 -0.35 -15.06 16 10 O -0.21 -5.87 9.64 -20.70 -0.20 -6.07 16 11 C -0.38 -11.27 9.65 30.92 0.30 -10.97 16 12 H 0.10 2.91 6.86 -52.49 -0.36 2.55 16 13 C 0.04 1.24 5.49 -17.53 -0.10 1.14 16 14 N -0.86 -25.14 13.67 55.48 0.76 -24.38 16 15 Si 0.94 21.58 29.55 -169.99 -5.02 16.56 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 N -0.55 -10.09 1.71 -111.75 -0.19 -10.28 16 20 C 0.58 9.54 7.71 -12.46 -0.10 9.44 16 21 O -0.47 -8.40 17.46 5.41 0.09 -8.30 16 22 C -0.14 -1.86 6.41 -104.83 -0.67 -2.53 16 23 C -0.05 -0.46 10.09 -39.32 -0.40 -0.85 16 24 C -0.10 -0.74 10.04 -39.45 -0.40 -1.14 16 25 C -0.10 -0.72 10.04 -39.45 -0.40 -1.11 16 26 C -0.05 -0.54 10.09 -39.32 -0.40 -0.93 16 27 C -0.12 -1.75 6.41 -104.83 -0.67 -2.42 16 28 C 0.57 10.28 5.53 -12.46 -0.07 10.22 16 29 O -0.42 -8.68 11.80 -16.65 -0.20 -8.88 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.64 6.65 -51.93 -0.35 0.30 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.11 5.18 -51.93 -0.27 0.84 16 34 H 0.08 1.81 6.12 -51.93 -0.32 1.49 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.04 0.64 7.34 -51.93 -0.38 0.25 16 37 H 0.06 0.81 6.65 -51.93 -0.35 0.46 16 38 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -35.33 351.73 -7.21 -42.54 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.93 Total: 2.30 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -2.48 Total: 6.28 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.57 Total: -34.66 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.65 Total: -38.31 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.33 -7.21 -42.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007822610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.179 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds