Wall clock time and date at job start Tue Mar 31 2020 17:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00049 * 2 1 4 4 C 1.53005 * 109.47400 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47216 * 175.00260 * 4 3 2 6 6 C 1.53007 * 109.46684 * 55.00469 * 4 3 2 7 7 O 1.45201 * 109.47204 * 295.00617 * 4 3 2 8 8 C 1.34830 * 116.99732 * 209.99913 * 7 4 3 9 9 O 1.21578 * 120.00195 * 359.97438 * 8 7 4 10 10 C 1.46957 * 119.99862 * 180.02562 * 8 7 4 11 11 C 1.43192 * 119.99993 * 359.97438 * 10 8 7 12 12 N 5.29062 * 122.43360 * 107.58639 * 2 1 3 13 13 C 1.37952 * 119.99987 * 179.97438 * 10 8 7 14 14 C 1.46339 * 120.00001 * 187.33775 * 13 10 8 15 15 C 1.40324 * 120.12242 * 213.82359 * 14 13 10 16 16 C 1.36529 * 119.87342 * 179.71935 * 15 14 13 17 17 C 1.39288 * 120.12298 * 0.57587 * 16 15 14 18 18 O 1.35497 * 119.87535 * 179.70029 * 17 16 15 19 19 C 1.34740 * 116.99964 * 186.99609 * 18 17 16 20 20 H 1.08007 * 119.99953 * 354.87322 * 19 18 17 21 21 C 1.38778 * 120.00002 * 174.86785 * 19 18 17 22 22 N 1.31463 * 119.99889 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99867 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47366 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46674 * 120.00168 * 23 21 19 26 26 H 1.48496 * 109.47330 * 239.99949 * 23 21 19 27 27 C 1.39286 * 120.24803 * 359.67252 * 17 16 15 28 28 C 1.36525 * 120.12622 * 0.04711 * 27 17 16 29 29 H 1.09006 * 109.46683 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47028 * 299.99456 * 1 2 3 31 31 H 1.08995 * 109.47092 * 59.99951 * 1 2 3 32 32 H 1.09002 * 109.47041 * 60.00377 * 3 2 1 33 33 H 1.08997 * 109.47528 * 300.00101 * 3 2 1 34 34 H 1.09002 * 109.47174 * 59.99928 * 6 4 3 35 35 H 1.08997 * 109.46901 * 179.97438 * 6 4 3 36 36 H 1.09007 * 109.46721 * 299.99781 * 6 4 3 37 37 H 1.08004 * 120.00084 * 7.33831 * 13 10 8 38 38 H 1.07999 * 120.06168 * 359.97438 * 15 14 13 39 39 H 1.08001 * 119.93919 * 180.25004 * 16 15 14 40 40 H 0.97012 * 119.99626 * 179.97438 * 22 21 19 41 41 H 1.07999 * 119.93487 * 180.02562 * 27 17 16 42 42 H 1.07997 * 120.06401 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9785 2.1765 -0.0889 6 6 3.9790 0.3194 -1.1808 7 8 3.9718 0.5698 1.2416 8 6 5.1881 0.9220 1.7046 9 8 5.8656 1.7210 1.0874 10 6 5.6955 0.3393 2.9546 11 6 4.8979 -0.6021 3.6812 12 7 4.2664 -1.3492 4.2567 13 6 6.9402 0.6993 3.4281 14 6 7.5137 0.0040 4.5811 15 6 8.3244 0.6995 5.4910 16 6 8.8521 0.0472 6.5681 17 6 8.5968 -1.3088 6.7580 18 8 9.1280 -1.9526 7.8254 19 6 8.9660 -3.2893 7.8763 20 1 8.3624 -3.7888 7.1329 21 6 9.5747 -4.0241 8.8840 22 7 10.3090 -3.4160 9.7891 23 14 9.3494 -5.8772 8.9550 24 1 8.4836 -6.3141 7.8304 25 1 10.6733 -6.5412 8.8468 26 1 8.7128 -6.2494 10.2439 27 6 7.7970 -2.0054 5.8551 28 6 7.2594 -1.3618 4.7777 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.6514 0.7810 -2.1124 35 1 5.0656 0.2338 -1.1806 36 1 3.5359 -0.6725 -1.0912 37 1 7.4915 1.4942 2.9479 38 1 8.5273 1.7498 5.3419 39 1 9.4730 0.5824 7.2713 40 1 10.7343 -3.9297 10.4937 41 1 7.6019 -3.0566 6.0075 42 1 6.6398 -1.9030 4.0781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017473272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:40 Heat of formation + Delta-G solvation = -84.670870 kcal Electronic energy + Delta-G solvation = -26555.668647 eV Core-core repulsion = 22467.873514 eV Total energy + Delta-G solvation = -4087.795133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.53131 -39.46794 -38.34194 -37.50549 -36.43789 -36.07457 -33.38324 -32.68357 -32.40002 -30.62883 -28.96440 -27.68992 -26.11125 -25.87525 -24.46986 -22.71278 -21.91894 -20.96504 -20.80812 -18.81458 -18.36039 -17.38094 -17.04309 -16.64185 -16.11637 -15.77946 -15.70598 -15.30701 -14.84606 -14.62891 -14.46664 -14.02804 -13.90311 -13.72980 -13.55244 -13.24669 -13.13735 -12.89443 -12.75729 -12.53966 -12.38361 -12.15588 -12.10408 -11.93723 -11.70087 -11.67622 -11.27341 -11.23025 -11.16144 -10.90006 -10.70045 -10.61873 -10.47252 -10.00595 -9.74860 -9.50975 -9.02386 -8.57961 -7.34546 -6.83276 -4.33471 0.42330 2.07717 2.12290 2.52866 2.56623 2.96711 2.97932 3.04317 3.16371 3.43018 3.70744 3.79556 4.21464 4.30628 4.43769 4.63031 4.70612 4.76330 4.88331 4.91120 4.98964 5.04963 5.06915 5.15369 5.27730 5.35557 5.38581 5.41847 5.54465 5.61108 5.75915 5.87202 5.95158 6.02574 6.22793 6.32863 6.38731 6.61977 6.75998 6.80588 6.93281 7.06836 7.11285 7.47973 7.63162 7.70363 7.95794 8.60849 9.25368 10.31988 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002233 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.911762 B =12534.200843 C =13522.685415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.064 3.936 4 C 0.090 3.910 5 H 0.100 0.900 6 C -0.166 4.166 7 O -0.339 6.339 8 C 0.529 3.471 9 O -0.518 6.518 10 C -0.181 4.181 11 C 0.270 3.730 12 N -0.428 5.428 13 C 0.131 3.869 14 C -0.236 4.236 15 C -0.023 4.023 16 C -0.199 4.199 17 C 0.173 3.827 18 O -0.148 6.148 19 C -0.388 4.388 20 H 0.102 0.898 21 C 0.043 3.957 22 N -0.840 5.840 23 Si 0.948 3.052 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.271 1.271 27 C -0.240 4.240 28 C -0.019 4.019 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.278 0.722 41 H 0.132 0.868 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.117 9.154 -17.283 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C -0.013 4.013 4 C 0.035 3.965 5 H 0.118 0.882 6 C -0.223 4.223 7 O -0.256 6.256 8 C 0.376 3.624 9 O -0.410 6.410 10 C -0.187 4.187 11 C -0.044 4.044 12 N -0.105 5.105 13 C 0.108 3.892 14 C -0.237 4.237 15 C -0.041 4.041 16 C -0.218 4.218 17 C 0.114 3.886 18 O -0.047 6.047 19 C -0.463 4.463 20 H 0.119 0.881 21 C -0.165 4.165 22 N -0.471 5.471 23 Si 0.771 3.229 24 H -0.186 1.186 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.260 4.260 28 C -0.038 4.038 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.169 0.831 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.088 0.912 41 H 0.150 0.850 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.539 8.051 -16.151 21.420 hybrid contribution -0.136 -0.333 -0.286 0.459 sum -11.674 7.718 -16.436 21.587 Atomic orbital electron populations 1.22757 0.80993 1.02997 0.99843 1.87980 1.19586 1.26823 1.95349 1.22661 0.91543 0.85857 1.01248 1.22794 0.92817 0.98363 0.82546 0.88184 1.22103 1.02226 1.01580 0.96422 1.86782 1.34011 1.65012 1.39798 1.20477 0.79434 0.78478 0.84056 1.90839 1.57723 1.33803 1.58599 1.16892 0.96227 1.07571 0.97970 1.25019 0.93010 0.92815 0.93547 1.81167 1.09715 1.10585 1.09026 1.23095 0.88388 0.89915 0.87767 1.18362 1.10480 0.94641 1.00265 1.20602 0.92531 0.98431 0.92567 1.19934 1.07654 0.92639 1.01602 1.19725 0.90679 0.92093 0.86085 1.83846 1.63160 1.22545 1.35123 1.21691 1.31943 0.78543 1.14127 0.88054 1.25500 0.95010 1.01381 0.94627 1.70001 1.27171 1.37260 1.12678 0.85528 0.78916 0.79235 0.79222 1.18601 1.19650 1.19664 1.20832 1.05386 1.01768 0.97982 1.20904 0.94238 0.93147 0.95515 0.89484 0.93967 0.94169 0.92235 0.91155 0.90997 0.91739 0.90585 0.83100 0.85801 0.85681 0.91234 0.85006 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.08 9.79 -38.80 -0.38 -4.46 16 3 C 0.06 0.56 5.82 37.16 0.22 0.77 16 4 C 0.09 0.93 2.98 -26.72 -0.08 0.85 16 5 H 0.10 0.95 7.16 -51.93 -0.37 0.58 16 6 C -0.17 -1.58 9.35 37.16 0.35 -1.23 16 7 O -0.34 -4.65 9.39 -43.63 -0.41 -5.06 16 8 C 0.53 7.38 7.85 34.26 0.27 7.65 16 9 O -0.52 -7.47 15.57 -19.33 -0.30 -7.77 16 10 C -0.18 -2.61 5.82 -104.55 -0.61 -3.22 16 11 C 0.27 4.57 11.38 -22.51 -0.26 4.32 16 12 N -0.43 -8.13 18.19 41.79 0.76 -7.37 16 13 C 0.13 1.73 9.43 -36.43 -0.34 1.38 16 14 C -0.24 -3.77 5.51 -105.07 -0.58 -4.35 16 15 C -0.02 -0.35 9.75 -39.41 -0.38 -0.74 16 16 C -0.20 -3.73 9.93 -39.81 -0.40 -4.12 16 17 C 0.17 3.84 6.66 -38.80 -0.26 3.58 16 18 O -0.15 -3.88 9.74 1.08 0.01 -3.87 16 19 C -0.39 -10.05 9.48 30.93 0.29 -9.76 16 20 H 0.10 2.45 5.19 -52.48 -0.27 2.17 16 21 C 0.04 1.09 5.50 -17.51 -0.10 0.99 16 22 N -0.84 -22.71 13.67 55.49 0.76 -21.96 16 23 Si 0.95 19.12 29.55 -169.99 -5.02 14.09 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.24 -5.00 9.10 -39.81 -0.36 -5.36 16 28 C -0.02 -0.35 8.24 -39.42 -0.32 -0.68 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.81 7.56 -51.93 -0.39 0.41 16 37 H 0.15 1.58 7.61 -52.48 -0.40 1.18 16 38 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 40 H 0.28 6.81 8.31 -40.81 -0.34 6.47 16 41 H 0.13 2.78 5.63 -52.49 -0.30 2.49 16 42 H 0.11 1.99 5.95 -52.49 -0.31 1.68 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -30.57 375.56 -5.36 -35.93 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.98 Total: 3.37 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.45 Total: -8.56 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 1.52 Total: -29.33 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.08 Total: -21.17 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.57 -5.36 -35.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017473272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.743 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds