Wall clock time and date at job start Tue Mar 31 2020 17:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00049 * 2 1 4 4 C 1.53005 * 109.47400 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47216 * 175.00260 * 4 3 2 6 6 C 1.53007 * 109.46684 * 55.00469 * 4 3 2 7 7 O 1.45201 * 109.47204 * 295.00617 * 4 3 2 8 8 C 1.34830 * 116.99732 * 209.99913 * 7 4 3 9 9 O 1.21578 * 120.00195 * 359.97438 * 8 7 4 10 10 C 1.46957 * 119.99862 * 180.02562 * 8 7 4 11 11 C 1.43192 * 119.99993 * 359.97438 * 10 8 7 12 12 N 5.29062 * 122.43360 * 107.58639 * 2 1 3 13 13 C 1.37952 * 119.99987 * 179.97438 * 10 8 7 14 14 C 1.46339 * 120.00001 * 187.33775 * 13 10 8 15 15 C 1.40324 * 120.12242 * 213.82359 * 14 13 10 16 16 C 1.36529 * 119.87342 * 179.71935 * 15 14 13 17 17 C 1.39288 * 120.12298 * 0.57587 * 16 15 14 18 18 O 1.35497 * 119.87535 * 179.70029 * 17 16 15 19 19 C 1.34740 * 116.99964 * 186.99609 * 18 17 16 20 20 H 1.08007 * 119.99953 * 354.87322 * 19 18 17 21 21 C 1.38778 * 120.00002 * 174.86785 * 19 18 17 22 22 N 1.31463 * 119.99889 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99867 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47366 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46674 * 120.00168 * 23 21 19 26 26 H 1.48496 * 109.47330 * 239.99949 * 23 21 19 27 27 C 1.39286 * 120.24803 * 359.67252 * 17 16 15 28 28 C 1.36525 * 120.12622 * 0.04711 * 27 17 16 29 29 H 1.09006 * 109.46683 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47028 * 299.99456 * 1 2 3 31 31 H 1.08995 * 109.47092 * 59.99951 * 1 2 3 32 32 H 1.09002 * 109.47041 * 60.00377 * 3 2 1 33 33 H 1.08997 * 109.47528 * 300.00101 * 3 2 1 34 34 H 1.09002 * 109.47174 * 59.99928 * 6 4 3 35 35 H 1.08997 * 109.46901 * 179.97438 * 6 4 3 36 36 H 1.09007 * 109.46721 * 299.99781 * 6 4 3 37 37 H 1.08004 * 120.00084 * 7.33831 * 13 10 8 38 38 H 1.07999 * 120.06168 * 359.97438 * 15 14 13 39 39 H 1.08001 * 119.93919 * 180.25004 * 16 15 14 40 40 H 0.97012 * 119.99626 * 179.97438 * 22 21 19 41 41 H 1.07999 * 119.93487 * 180.02562 * 27 17 16 42 42 H 1.07997 * 120.06401 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9785 2.1765 -0.0889 6 6 3.9790 0.3194 -1.1808 7 8 3.9718 0.5698 1.2416 8 6 5.1881 0.9220 1.7046 9 8 5.8656 1.7210 1.0874 10 6 5.6955 0.3393 2.9546 11 6 4.8979 -0.6021 3.6812 12 7 4.2664 -1.3492 4.2567 13 6 6.9402 0.6993 3.4281 14 6 7.5137 0.0040 4.5811 15 6 8.3244 0.6995 5.4910 16 6 8.8521 0.0472 6.5681 17 6 8.5968 -1.3088 6.7580 18 8 9.1280 -1.9526 7.8254 19 6 8.9660 -3.2893 7.8763 20 1 8.3624 -3.7888 7.1329 21 6 9.5747 -4.0241 8.8840 22 7 10.3090 -3.4160 9.7891 23 14 9.3494 -5.8772 8.9550 24 1 8.4836 -6.3141 7.8304 25 1 10.6733 -6.5412 8.8468 26 1 8.7128 -6.2494 10.2439 27 6 7.7970 -2.0054 5.8551 28 6 7.2594 -1.3618 4.7777 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.6514 0.7810 -2.1124 35 1 5.0656 0.2338 -1.1806 36 1 3.5359 -0.6725 -1.0912 37 1 7.4915 1.4942 2.9479 38 1 8.5273 1.7498 5.3419 39 1 9.4730 0.5824 7.2713 40 1 10.7343 -3.9297 10.4937 41 1 7.6019 -3.0566 6.0075 42 1 6.6398 -1.9030 4.0781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017473272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:37 Heat of formation + Delta-G solvation = -102.539160 kcal Electronic energy + Delta-G solvation = -26556.443474 eV Core-core repulsion = 22467.873514 eV Total energy + Delta-G solvation = -4088.569960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.61166 -41.02950 -39.26726 -38.83784 -37.57422 -37.45562 -34.84179 -34.21445 -33.35837 -32.14648 -30.41573 -28.32658 -27.65455 -26.71853 -25.79086 -24.04970 -23.26439 -22.32345 -21.81465 -20.13607 -19.88627 -18.93394 -18.12934 -17.41762 -17.13228 -16.89482 -16.62717 -16.52488 -16.26581 -15.97894 -15.90789 -15.67333 -15.18436 -14.84611 -14.76803 -14.65798 -14.26551 -14.12056 -13.91669 -13.70959 -13.67786 -13.43352 -13.26069 -13.16258 -12.87608 -12.75785 -12.64679 -12.45467 -12.37330 -12.16553 -11.99507 -11.75337 -11.45563 -11.37570 -11.07503 -10.65088 -10.62092 -10.05645 -8.92560 -8.61692 -6.26498 -0.81404 0.54272 0.71265 1.32011 1.33384 1.39719 1.45366 1.49346 1.86030 2.09063 2.43257 2.73455 2.80875 2.91866 3.03975 3.32270 3.54082 3.72612 3.82576 3.93947 3.94662 4.06547 4.21999 4.33478 4.38347 4.42781 4.48168 4.53830 4.60134 4.65224 4.80096 4.80633 4.85454 4.86920 4.91046 5.05593 5.10591 5.23163 5.39406 5.43437 5.52059 5.53904 5.87907 5.97924 6.19044 6.47466 6.71404 6.82528 7.55481 8.59473 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002233 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.911762 B =12534.200843 C =13522.685415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.061 3.939 4 C 0.081 3.919 5 H 0.113 0.887 6 C -0.162 4.162 7 O -0.356 6.356 8 C 0.535 3.465 9 O -0.516 6.516 10 C -0.169 4.169 11 C 0.278 3.722 12 N -0.466 5.466 13 C 0.155 3.845 14 C -0.212 4.212 15 C -0.002 4.002 16 C -0.207 4.207 17 C 0.147 3.853 18 O -0.206 6.206 19 C -0.419 4.419 20 H 0.102 0.898 21 C -0.012 4.012 22 N -0.903 5.903 23 Si 1.016 2.984 24 H -0.256 1.256 25 H -0.263 1.263 26 H -0.266 1.266 27 C -0.254 4.254 28 C -0.029 4.029 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.199 0.801 38 H 0.182 0.818 39 H 0.134 0.866 40 H 0.278 0.722 41 H 0.115 0.885 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.556 12.109 -21.158 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.015 4.015 4 C 0.027 3.973 5 H 0.131 0.869 6 C -0.219 4.219 7 O -0.273 6.273 8 C 0.382 3.618 9 O -0.407 6.407 10 C -0.174 4.174 11 C -0.035 4.035 12 N -0.144 5.144 13 C 0.133 3.867 14 C -0.213 4.213 15 C -0.020 4.020 16 C -0.226 4.226 17 C 0.093 3.907 18 O -0.110 6.110 19 C -0.494 4.494 20 H 0.119 0.881 21 C -0.212 4.212 22 N -0.539 5.539 23 Si 0.835 3.165 24 H -0.180 1.180 25 H -0.187 1.187 26 H -0.191 1.191 27 C -0.274 4.274 28 C -0.047 4.047 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.216 0.784 38 H 0.199 0.801 39 H 0.152 0.848 40 H 0.088 0.912 41 H 0.133 0.867 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.027 11.046 -20.101 26.377 hybrid contribution -0.060 -0.799 0.317 0.861 sum -13.087 10.247 -19.785 25.840 Atomic orbital electron populations 1.22898 0.79576 1.03549 1.00988 1.87932 1.21290 1.28160 1.95619 1.22811 0.90335 0.85454 1.02877 1.23182 0.94080 0.98779 0.81297 0.86915 1.22083 1.01514 1.00924 0.97396 1.86775 1.33616 1.65509 1.41413 1.20203 0.79693 0.78268 0.83668 1.90849 1.57754 1.33640 1.58479 1.17150 0.96411 1.06025 0.97859 1.25504 0.92529 0.92526 0.92928 1.81200 1.10979 1.11832 1.10353 1.23376 0.87742 0.89721 0.85886 1.18753 1.08415 0.93644 1.00497 1.21160 0.90036 1.00737 0.90072 1.20308 1.08034 0.91349 1.02925 1.20348 0.90702 0.93609 0.86042 1.83844 1.66799 1.22652 1.37655 1.21920 1.33178 0.79275 1.15013 0.88087 1.26581 0.94616 1.05934 0.94094 1.70109 1.30373 1.38932 1.14439 0.84564 0.79133 0.73502 0.79296 1.17998 1.18731 1.19089 1.20848 1.06069 1.01413 0.99044 1.21040 0.94248 0.94599 0.94834 0.89382 0.93779 0.92008 0.92170 0.87869 0.88328 0.92566 0.92159 0.78366 0.80061 0.84837 0.91225 0.86691 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.99 9.79 -145.57 -1.43 -9.42 16 3 C 0.06 0.88 5.82 71.98 0.42 1.30 16 4 C 0.08 1.41 2.98 30.60 0.09 1.50 16 5 H 0.11 1.68 7.16 -2.39 -0.02 1.66 16 6 C -0.16 -2.61 9.35 71.98 0.67 -1.94 16 7 O -0.36 -8.71 9.39 -54.76 -0.51 -9.23 16 8 C 0.54 12.72 7.85 70.11 0.55 13.27 16 9 O -0.52 -12.24 15.57 19.58 0.30 -11.94 16 10 C -0.17 -4.16 5.82 -19.82 -0.12 -4.28 16 11 C 0.28 8.79 11.38 88.34 1.01 9.80 16 12 N -0.47 -17.29 18.19 18.99 0.35 -16.95 16 13 C 0.15 3.17 9.43 24.31 0.23 3.40 16 14 C -0.21 -5.91 5.51 -20.16 -0.11 -6.02 16 15 C 0.00 -0.06 9.75 22.38 0.22 0.16 16 16 C -0.21 -7.54 9.93 22.12 0.22 -7.32 16 17 C 0.15 6.80 6.66 22.77 0.15 6.95 16 18 O -0.21 -11.67 9.74 -19.06 -0.19 -11.85 16 19 C -0.42 -23.49 9.48 67.95 0.64 -22.85 16 20 H 0.10 5.34 5.19 -2.91 -0.02 5.32 16 21 C -0.01 -0.65 5.50 84.88 0.47 -0.18 16 22 N -0.90 -52.70 13.67 21.63 0.30 -52.40 16 23 Si 1.02 41.68 29.55 68.60 2.03 43.71 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 26 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 27 C -0.25 -10.96 9.10 22.12 0.20 -10.75 16 28 C -0.03 -1.01 8.24 22.38 0.18 -0.83 16 29 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.17 7.56 -2.38 -0.02 1.15 16 37 H 0.20 2.51 7.61 -2.91 -0.02 2.49 16 38 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 39 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.28 14.77 8.31 -92.70 -0.77 14.00 16 41 H 0.12 5.25 5.63 -2.91 -0.02 5.23 16 42 H 0.12 4.02 5.95 -2.91 -0.02 4.00 16 Total: -1.00 -73.94 375.56 7.99 -65.95 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.06 Total: 18.31 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 6.08 Total: -16.19 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: 0.64 Total: -69.35 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -1.82 Total: -42.44 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -73.94 7.99 -65.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017473272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.584 kcal (2) G-P(sol) polarization free energy of solvation -73.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds