Wall clock time and date at job start Tue Mar 31 2020 18:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47116 * 2 1 4 4 C 1.50697 * 109.47288 * 240.00259 * 2 1 3 5 5 O 1.20833 * 119.99964 * 240.00474 * 4 2 1 6 6 O 1.34225 * 120.00087 * 59.99837 * 4 2 1 7 7 C 1.45201 * 117.00231 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47375 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.46928 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46685 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00482 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99856 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99743 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99868 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47202 * 59.99945 * 14 12 10 16 16 H 1.48504 * 109.47009 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47398 * 299.99615 * 14 12 10 18 18 N 1.46500 * 109.46785 * 119.99923 * 2 1 3 19 19 C 1.34523 * 124.46093 * 239.99714 * 18 2 1 20 20 O 1.21442 * 125.71189 * 359.96211 * 19 18 2 21 21 C 1.47816 * 108.58205 * 179.97438 * 19 18 2 22 22 C 1.38568 * 134.30399 * 179.97438 * 21 19 18 23 23 C 1.38612 * 119.71964 * 180.02562 * 22 21 19 24 24 C 1.38235 * 120.45945 * 0.02562 * 23 22 21 25 25 C 1.38607 * 120.45691 * 0.02562 * 24 23 22 26 26 C 1.38562 * 119.72184 * 359.97438 * 25 24 23 27 27 C 1.34526 * 124.46118 * 59.98035 * 18 2 1 28 28 O 1.21444 * 125.70787 * 0.02562 * 27 18 2 29 29 H 1.09005 * 109.46938 * 60.00028 * 1 2 3 30 30 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47028 * 300.00088 * 1 2 3 32 32 H 1.08999 * 109.46880 * 300.00252 * 7 6 4 33 33 H 1.09001 * 109.46928 * 59.99728 * 7 6 4 34 34 H 1.08995 * 109.46668 * 299.99865 * 8 7 6 35 35 H 1.08998 * 109.46985 * 59.99885 * 8 7 6 36 36 H 1.08995 * 109.47473 * 299.99541 * 9 8 7 37 37 H 1.08998 * 109.47244 * 60.00212 * 9 8 7 38 38 H 0.96996 * 119.99705 * 180.02562 * 13 12 10 39 39 H 1.08001 * 120.13970 * 0.07150 * 22 21 19 40 40 H 1.07994 * 119.76881 * 180.27787 * 23 22 21 41 41 H 1.08001 * 119.76462 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.13408 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7270 -1.6928 -1.1196 6 8 1.7081 -0.2517 -2.4495 7 6 2.2268 -0.9862 -3.5896 8 6 1.7559 -0.3189 -4.8834 9 6 2.3030 -1.0925 -6.0847 10 6 1.8386 -0.4355 -7.3589 11 1 1.2159 0.4459 -7.3163 12 6 2.2096 -0.9591 -8.5794 13 7 2.9683 -2.0321 -8.6313 14 14 1.6346 -0.1444 -10.1589 15 1 2.1302 1.2548 -10.2031 16 1 2.1665 -0.8945 -11.3249 17 1 0.1502 -0.1453 -10.2045 18 7 2.0183 -0.6906 1.1962 19 6 2.7949 -0.1252 2.1379 20 8 3.1967 1.0208 2.1310 21 6 3.0775 -1.1322 3.1824 22 6 3.8032 -1.1249 4.3628 23 6 3.8699 -2.2736 5.1356 24 6 3.2182 -3.4255 4.7365 25 6 2.4895 -3.4479 3.5576 26 6 2.4140 -2.3071 2.7749 27 6 1.7488 -1.9736 1.4977 28 8 1.0730 -2.7314 0.8315 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.3163 -0.9859 -3.5568 33 1 1.8627 -2.0130 -3.5565 34 1 0.6664 -0.3189 -4.9164 35 1 2.1204 0.7078 -4.9162 36 1 3.3925 -1.0921 -6.0515 37 1 1.9388 -2.1193 -6.0521 38 1 3.2296 -2.4001 -9.4898 39 1 4.3140 -0.2276 4.6798 40 1 4.4315 -2.2674 6.0580 41 1 3.2781 -4.3144 5.3470 42 1 1.9821 -4.3507 3.2509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025394584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:53 Heat of formation + Delta-G solvation = -129.030580 kcal Electronic energy + Delta-G solvation = -27299.689653 eV Core-core repulsion = 23209.970939 eV Total energy + Delta-G solvation = -4089.718714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 6.00 seconds Orbital eigenvalues (eV) -43.69177 -41.66304 -39.90064 -39.53558 -38.07253 -37.15530 -36.01597 -34.80041 -33.67262 -32.14170 -31.26060 -29.11152 -26.67586 -26.27965 -25.55764 -24.30037 -23.35970 -22.26751 -22.16088 -20.86413 -19.31061 -18.81510 -18.73374 -18.34158 -17.90064 -17.84543 -17.37495 -16.73923 -16.51216 -16.43717 -15.88338 -15.70897 -15.45579 -15.28059 -15.05924 -14.92248 -14.38913 -14.18527 -13.88299 -13.85478 -13.62270 -13.51665 -13.30117 -13.21987 -12.82484 -12.60215 -12.56218 -12.45373 -12.17026 -12.02867 -11.69727 -11.59121 -11.51168 -11.47230 -11.33950 -11.11919 -10.59018 -10.23968 -10.22824 -8.23627 -6.35645 -1.06145 -0.04000 0.72671 0.84052 0.94135 1.38818 1.41490 1.43941 1.51984 1.83408 2.39757 2.51257 2.61225 3.10072 3.11873 3.24429 3.54582 3.56632 3.64312 3.90285 3.91864 3.96131 4.05542 4.17039 4.22705 4.31340 4.44828 4.49402 4.61909 4.73525 4.75648 4.82868 4.88948 4.99161 5.01748 5.20320 5.23077 5.25804 5.38701 5.45288 5.59061 5.68890 5.76940 5.97683 6.15331 6.30616 6.45340 6.79863 7.33876 8.88525 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.027075 B = 0.002078 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.934798 B =13469.679161 C =13776.467901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.150 3.850 3 H 0.166 0.834 4 C 0.448 3.552 5 O -0.529 6.529 6 O -0.343 6.343 7 C 0.079 3.921 8 C -0.092 4.092 9 C 0.026 3.974 10 C -0.544 4.544 11 H 0.067 0.933 12 C -0.003 4.003 13 N -0.934 5.934 14 Si 0.971 3.029 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.265 1.265 18 N -0.573 5.573 19 C 0.578 3.422 20 O -0.485 6.485 21 C -0.159 4.159 22 C -0.040 4.040 23 C -0.081 4.081 24 C -0.080 4.080 25 C -0.049 4.049 26 C -0.159 4.159 27 C 0.572 3.428 28 O -0.484 6.484 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.071 0.929 36 H -0.004 1.004 37 H -0.005 1.005 38 H 0.265 0.735 39 H 0.161 0.839 40 H 0.185 0.815 41 H 0.181 0.819 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.342 1.353 35.162 35.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.047 3.953 3 H 0.183 0.817 4 C 0.291 3.709 5 O -0.418 6.418 6 O -0.258 6.258 7 C 0.005 3.995 8 C -0.130 4.130 9 C -0.011 4.011 10 C -0.581 4.581 11 H 0.086 0.914 12 C -0.201 4.201 13 N -0.574 5.574 14 Si 0.795 3.205 15 H -0.190 1.190 16 H -0.210 1.210 17 H -0.190 1.190 18 N -0.316 5.316 19 C 0.370 3.630 20 O -0.358 6.358 21 C -0.162 4.162 22 C -0.059 4.059 23 C -0.099 4.099 24 C -0.098 4.098 25 C -0.068 4.068 26 C -0.163 4.163 27 C 0.363 3.637 28 O -0.357 6.357 29 H 0.128 0.872 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.073 0.927 39 H 0.178 0.822 40 H 0.202 0.798 41 H 0.199 0.801 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.234 1.187 34.581 34.624 hybrid contribution 0.066 -0.123 -1.720 1.726 sum -1.168 1.064 32.861 32.899 Atomic orbital electron populations 1.22160 0.87828 1.04423 1.06762 1.20987 0.99084 0.97567 0.77668 0.81688 1.24219 0.77440 0.82990 0.86292 1.90680 1.36680 1.26791 1.87604 1.86442 1.69385 1.55494 1.14491 1.23221 0.98511 0.95189 0.82559 1.21470 1.01465 0.99976 0.90041 1.18932 0.95089 0.94782 0.92332 1.21587 1.31971 1.12888 0.91694 0.91447 1.26058 0.95063 0.95574 1.03420 1.70102 1.37329 1.23351 1.26652 0.85404 0.78972 0.78599 0.77496 1.18958 1.20954 1.18960 1.46517 1.48792 1.14237 1.22030 1.18777 0.75542 0.86861 0.81828 1.90794 1.50036 1.18039 1.76963 1.20448 1.04332 0.93260 0.98187 1.21212 0.93855 1.00933 0.89861 1.21999 0.96945 0.90678 1.00267 1.21974 0.93160 1.00410 0.94239 1.21166 0.96461 0.95968 0.93180 1.20488 1.02672 0.97568 0.95533 1.18887 0.78749 0.80406 0.85672 1.90780 1.36751 1.52504 1.55620 0.87218 0.92121 0.87785 0.91936 0.92188 0.91087 0.91039 0.98590 0.98667 0.92662 0.82178 0.79812 0.80137 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.13 71.98 0.66 -2.37 16 2 C 0.15 3.73 3.30 44.24 0.15 3.88 16 3 H 0.17 3.39 7.58 -2.39 -0.02 3.37 16 4 C 0.45 15.07 6.98 71.23 0.50 15.57 16 5 O -0.53 -21.40 14.66 26.95 0.40 -21.00 16 6 O -0.34 -11.81 10.12 -51.37 -0.52 -12.33 16 7 C 0.08 3.09 5.47 71.98 0.39 3.48 16 8 C -0.09 -3.91 5.53 30.59 0.17 -3.74 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.54 -31.16 9.11 25.60 0.23 -30.92 16 11 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 12 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 13 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 14 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 15 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 N -0.57 -14.84 2.31 -744.39 -1.72 -16.56 16 19 C 0.58 13.78 8.02 86.82 0.70 14.47 16 20 O -0.49 -12.97 17.43 -3.53 -0.06 -13.04 16 21 C -0.16 -2.88 6.41 -20.00 -0.13 -3.01 16 22 C -0.04 -0.39 10.09 22.44 0.23 -0.17 16 23 C -0.08 -0.30 10.04 22.36 0.22 -0.07 16 24 C -0.08 -0.37 10.04 22.36 0.22 -0.15 16 25 C -0.05 -0.61 10.09 22.44 0.23 -0.38 16 26 C -0.16 -3.17 6.40 -20.00 -0.13 -3.30 16 27 C 0.57 15.72 6.68 86.82 0.58 16.30 16 28 O -0.48 -16.27 15.57 9.99 0.16 -16.11 16 29 H 0.11 1.88 8.11 -2.38 -0.02 1.86 16 30 H 0.06 1.44 6.84 -2.39 -0.02 1.43 16 31 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.06 2.51 8.13 -2.39 -0.02 2.49 16 33 H 0.06 2.46 8.13 -2.39 -0.02 2.44 16 34 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 40 H 0.18 -0.77 8.06 -2.91 -0.02 -0.79 16 41 H 0.18 -0.49 8.06 -2.91 -0.02 -0.51 16 42 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -81.01 369.75 6.23 -74.77 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.04 Total: 3.80 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 4.63 Total: 11.41 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -1.44 Total: -74.04 kcal Atomic # 8 Polarization: -62.44 SS G_CDS: -0.03 Total: -62.47 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -81.01 6.23 -74.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025394584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.256 kcal (2) G-P(sol) polarization free energy of solvation -81.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.00 seconds