Wall clock time and date at job start Tue Mar 31 2020 16:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35846 * 120.90596 * 2 1 4 4 C 1.41008 * 119.82717 * 179.97438 * 3 2 1 5 5 O 1.21794 * 119.15648 * 180.02562 * 4 3 2 6 6 O 1.34224 * 121.68474 * 359.71455 * 4 3 2 7 7 C 1.35029 * 121.46423 * 0.57568 * 6 4 3 8 8 C 1.38683 * 120.73566 * 179.71493 * 7 6 4 9 9 C 1.38516 * 119.78425 * 179.68151 * 8 7 6 10 10 O 1.35739 * 119.73010 * 179.97438 * 9 8 7 11 11 C 1.42899 * 117.00210 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.47040 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00144 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99677 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00538 * 359.97438 * 14 12 11 16 16 C 1.46504 * 119.99895 * 179.97438 * 14 12 11 17 17 C 1.50701 * 109.46864 * 89.99747 * 16 14 12 18 18 H 1.08001 * 120.00583 * 0.02562 * 17 16 14 19 19 C 1.37881 * 120.00145 * 179.97438 * 17 16 14 20 20 N 1.31515 * 120.00071 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99841 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47243 * 89.99710 * 21 19 17 23 23 H 1.48499 * 109.47522 * 209.99780 * 21 19 17 24 24 H 1.48505 * 109.47312 * 330.00278 * 21 19 17 25 25 C 1.39378 * 120.54187 * 0.04174 * 9 8 7 26 26 C 1.36456 * 120.42984 * 359.97438 * 25 9 8 27 27 C 1.39961 * 119.79740 * 359.97438 * 26 25 9 28 28 H 1.08998 * 109.47560 * 270.02631 * 1 2 3 29 29 H 1.09007 * 109.47132 * 30.02582 * 1 2 3 30 30 H 1.08996 * 109.47395 * 150.02135 * 1 2 3 31 31 H 1.08000 * 120.08776 * 359.95718 * 3 2 1 32 32 H 1.07991 * 120.10851 * 359.67931 * 8 7 6 33 33 H 1.08997 * 109.47330 * 299.99920 * 11 10 9 34 34 H 1.09002 * 109.47209 * 60.00744 * 11 10 9 35 35 H 1.09001 * 109.47312 * 89.99955 * 15 14 12 36 36 H 1.08997 * 109.47190 * 210.00170 * 15 14 12 37 37 H 1.09002 * 109.47069 * 330.00071 * 15 14 12 38 38 H 1.08998 * 109.47494 * 209.99732 * 16 14 12 39 39 H 1.09001 * 109.46949 * 330.00472 * 16 14 12 40 40 H 0.96998 * 119.99472 * 179.97438 * 20 19 17 41 41 H 1.08004 * 119.78381 * 179.97438 * 25 9 8 42 42 H 1.08004 * 120.09999 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2047 1.1656 0.0000 4 6 3.6145 1.1390 0.0005 5 8 4.2278 2.1913 0.0010 6 8 4.2979 -0.0162 0.0068 7 6 3.6655 -1.2092 0.0012 8 6 4.3867 -2.3938 0.0019 9 6 3.7177 -3.6067 0.0028 10 8 4.4247 -4.7654 0.0029 11 6 3.6758 -5.9824 0.0033 12 6 4.6226 -7.1549 0.0040 13 8 5.8207 -6.9668 0.0036 14 7 4.1379 -8.4124 0.0039 15 6 2.6906 -8.6397 0.0038 16 6 5.0583 -9.5523 0.0040 17 6 5.3737 -9.9430 1.4249 18 1 4.9325 -9.3972 2.2458 19 6 6.2249 -10.9980 1.6770 20 7 6.5006 -11.3387 2.9170 21 14 6.9876 -11.9425 0.2573 22 1 8.2793 -11.3136 -0.1185 23 1 7.2235 -13.3497 0.6688 24 1 6.0665 -11.9151 -0.9072 25 6 2.3245 -3.6471 0.0022 26 6 1.5995 -2.4911 0.0013 27 6 2.2590 -1.2565 0.0014 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6810 2.1101 -0.0007 32 1 5.4664 -2.3706 0.0016 33 1 3.0480 -6.0224 0.8934 34 1 3.0477 -6.0228 -0.8866 35 1 2.3317 -8.6961 -1.0239 36 1 2.4697 -9.5752 0.5176 37 1 2.1936 -7.8168 0.5176 38 1 4.5942 -10.3941 -0.5098 39 1 5.9790 -9.2758 -0.5097 40 1 7.0991 -12.0811 3.0943 41 1 1.8155 -4.5996 0.0025 42 1 0.5202 -2.5286 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043734639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:21 Heat of formation + Delta-G solvation = -88.750213 kcal Electronic energy + Delta-G solvation = -26953.563471 eV Core-core repulsion = 22865.591445 eV Total energy + Delta-G solvation = -4087.972026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.20688 -40.48610 -39.12263 -38.18314 -37.19722 -35.49856 -35.07612 -32.67500 -31.51112 -30.08272 -29.40400 -29.14898 -27.62670 -26.01427 -24.47370 -23.76387 -22.62269 -22.12323 -20.00322 -19.01071 -18.61047 -17.78583 -17.36920 -17.13751 -17.03325 -16.41069 -16.38308 -15.67347 -15.40264 -15.17724 -14.65480 -14.45886 -14.31076 -14.16795 -14.10235 -13.87063 -13.52026 -13.25863 -13.03777 -12.75833 -12.72475 -12.47843 -12.22146 -12.19657 -12.11654 -11.65018 -11.52459 -11.49062 -11.02235 -10.60996 -10.58644 -10.24497 -10.16588 -9.64405 -9.25181 -9.22528 -8.66539 -8.40877 -7.92479 -6.16285 -4.16417 -0.10922 0.64546 1.19100 1.92201 2.50251 2.70457 3.02324 3.24023 3.29685 3.29903 3.32436 3.72201 3.83493 3.84894 3.97357 4.26688 4.32647 4.42808 4.62302 4.68942 4.79753 4.82639 4.88665 4.92421 4.95340 5.16353 5.17179 5.27374 5.35316 5.36256 5.47388 5.63264 5.66854 5.73508 5.80965 5.91660 5.96632 6.51435 6.78866 6.88539 6.91965 7.12748 7.21034 7.50173 7.96850 8.35977 8.68965 8.86052 9.42760 10.96865 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.002149 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.728808 B =13028.057401 C =13664.245140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.046 3.954 3 C -0.274 4.274 4 C 0.513 3.487 5 O -0.470 6.470 6 O -0.270 6.270 7 C 0.192 3.808 8 C -0.175 4.175 9 C 0.198 3.802 10 O -0.274 6.274 11 C 0.039 3.961 12 C 0.508 3.492 13 O -0.513 6.513 14 N -0.593 5.593 15 C 0.078 3.922 16 C 0.217 3.783 17 C -0.534 4.534 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.895 5.895 21 Si 0.877 3.123 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.266 1.266 25 C -0.229 4.229 26 C -0.012 4.012 27 C -0.201 4.201 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.039 0.961 40 H 0.266 0.734 41 H 0.143 0.857 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.946 18.180 -8.087 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.045 3.955 3 C -0.293 4.293 4 C 0.363 3.637 5 O -0.359 6.359 6 O -0.181 6.181 7 C 0.147 3.853 8 C -0.194 4.194 9 C 0.150 3.850 10 O -0.185 6.185 11 C -0.039 4.039 12 C 0.292 3.708 13 O -0.388 6.388 14 N -0.327 5.327 15 C -0.066 4.066 16 C 0.097 3.903 17 C -0.572 4.572 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.533 5.533 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.190 1.190 25 C -0.247 4.247 26 C -0.030 4.030 27 C -0.202 4.202 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.178 0.822 32 H 0.173 0.827 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.161 0.839 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.467 18.600 -7.975 26.733 hybrid contribution 0.031 -0.674 -0.468 0.821 sum -17.436 17.926 -8.443 26.394 Atomic orbital electron populations 1.21020 0.89098 1.04382 1.03980 1.21487 0.96786 0.90956 0.86280 1.22292 0.92831 1.00305 1.13904 1.19174 0.88203 0.81082 0.75277 1.90981 1.72108 1.25652 1.47149 1.83560 1.43444 1.13658 1.77485 1.18493 0.89283 0.83076 0.94464 1.19502 1.01903 0.86603 1.11440 1.18860 0.89880 0.86098 0.90148 1.86204 1.34463 1.11520 1.86267 1.22824 0.94784 0.82699 1.03610 1.19635 0.88863 0.83459 0.78829 1.90747 1.15486 1.84458 1.48135 1.47760 1.07200 1.05781 1.71920 1.21757 0.80847 1.03155 1.00811 1.19739 0.89238 0.82650 0.98659 1.21287 1.28999 1.15853 0.91089 0.90707 1.24861 0.95648 0.96808 0.95651 1.69890 1.36038 1.28653 1.18681 0.86844 0.80618 0.79411 0.82769 1.19794 1.20976 1.19050 1.21129 0.92632 1.00405 1.10575 1.20660 1.00188 0.89696 0.92485 1.18881 0.91578 0.94490 1.15295 0.89042 0.89832 0.90002 0.82202 0.82661 0.88655 0.88906 0.93161 0.89934 0.92327 0.94769 0.94318 0.92428 0.83890 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.39 9.64 36.00 0.35 -0.04 16 2 C 0.05 0.32 6.08 -102.18 -0.62 -0.30 16 3 C -0.27 -2.36 9.62 -39.39 -0.38 -2.74 16 4 C 0.51 6.41 7.89 31.78 0.25 6.66 16 5 O -0.47 -7.32 17.91 -19.60 -0.35 -7.68 16 6 O -0.27 -3.48 9.82 -20.81 -0.20 -3.69 16 7 C 0.19 2.14 6.76 -38.48 -0.26 1.88 16 8 C -0.18 -2.05 9.94 -39.31 -0.39 -2.44 16 9 C 0.20 2.24 6.69 -39.05 -0.26 1.98 16 10 O -0.27 -3.94 9.65 -38.83 -0.37 -4.32 16 11 C 0.04 0.49 3.76 36.01 0.14 0.63 16 12 C 0.51 9.59 7.75 -10.98 -0.09 9.51 16 13 O -0.51 -12.43 16.08 -14.35 -0.23 -12.66 16 14 N -0.59 -11.07 2.86 -182.95 -0.52 -11.59 16 15 C 0.08 0.98 10.24 59.85 0.61 1.59 16 16 C 0.22 5.02 4.23 -5.19 -0.02 5.00 16 17 C -0.53 -14.78 9.94 -34.44 -0.34 -15.12 16 18 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 20 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 21 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 25 C -0.23 -1.82 8.96 -39.80 -0.36 -2.17 16 26 C -0.01 -0.08 9.36 -39.58 -0.37 -0.45 16 27 C -0.20 -1.73 5.87 -105.01 -0.62 -2.35 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.17 8.10 -51.92 -0.42 -0.25 16 30 H 0.08 0.15 6.62 -51.93 -0.34 -0.20 16 31 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.10 0.95 6.90 -51.93 -0.36 0.59 16 34 H 0.09 0.81 7.61 -51.93 -0.39 0.42 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 37 H 0.06 0.54 6.44 -51.93 -0.33 0.20 16 38 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 39 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.14 0.79 6.25 -52.48 -0.33 0.46 16 42 H 0.14 0.45 6.52 -52.48 -0.34 0.10 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -37.42 359.93 -7.56 -44.98 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -4.95 Total: -4.12 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -2.46 Total: 3.61 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.25 Total: -37.81 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.16 Total: -28.34 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.42 -7.56 -44.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043734639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.773 kcal (2) G-P(sol) polarization free energy of solvation -37.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds