Wall clock time and date at job start Tue Mar 31 2020 16:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35846 * 120.90596 * 2 1 4 4 C 1.41008 * 119.82717 * 179.97438 * 3 2 1 5 5 O 1.21794 * 119.15648 * 180.02562 * 4 3 2 6 6 O 1.34224 * 121.68474 * 359.71455 * 4 3 2 7 7 C 1.35029 * 121.46423 * 0.57568 * 6 4 3 8 8 C 1.38683 * 120.73566 * 179.71493 * 7 6 4 9 9 C 1.38516 * 119.78425 * 179.68151 * 8 7 6 10 10 O 1.35739 * 119.73010 * 179.97438 * 9 8 7 11 11 C 1.42899 * 117.00210 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.47040 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00144 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99677 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00538 * 359.97438 * 14 12 11 16 16 C 1.46504 * 119.99895 * 179.97438 * 14 12 11 17 17 C 1.50701 * 109.46864 * 89.99747 * 16 14 12 18 18 H 1.08001 * 120.00583 * 0.02562 * 17 16 14 19 19 C 1.37881 * 120.00145 * 179.97438 * 17 16 14 20 20 N 1.31515 * 120.00071 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99841 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47243 * 89.99710 * 21 19 17 23 23 H 1.48499 * 109.47522 * 209.99780 * 21 19 17 24 24 H 1.48505 * 109.47312 * 330.00278 * 21 19 17 25 25 C 1.39378 * 120.54187 * 0.04174 * 9 8 7 26 26 C 1.36456 * 120.42984 * 359.97438 * 25 9 8 27 27 C 1.39961 * 119.79740 * 359.97438 * 26 25 9 28 28 H 1.08998 * 109.47560 * 270.02631 * 1 2 3 29 29 H 1.09007 * 109.47132 * 30.02582 * 1 2 3 30 30 H 1.08996 * 109.47395 * 150.02135 * 1 2 3 31 31 H 1.08000 * 120.08776 * 359.95718 * 3 2 1 32 32 H 1.07991 * 120.10851 * 359.67931 * 8 7 6 33 33 H 1.08997 * 109.47330 * 299.99920 * 11 10 9 34 34 H 1.09002 * 109.47209 * 60.00744 * 11 10 9 35 35 H 1.09001 * 109.47312 * 89.99955 * 15 14 12 36 36 H 1.08997 * 109.47190 * 210.00170 * 15 14 12 37 37 H 1.09002 * 109.47069 * 330.00071 * 15 14 12 38 38 H 1.08998 * 109.47494 * 209.99732 * 16 14 12 39 39 H 1.09001 * 109.46949 * 330.00472 * 16 14 12 40 40 H 0.96998 * 119.99472 * 179.97438 * 20 19 17 41 41 H 1.08004 * 119.78381 * 179.97438 * 25 9 8 42 42 H 1.08004 * 120.09999 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2047 1.1656 0.0000 4 6 3.6145 1.1390 0.0005 5 8 4.2278 2.1913 0.0010 6 8 4.2979 -0.0162 0.0068 7 6 3.6655 -1.2092 0.0012 8 6 4.3867 -2.3938 0.0019 9 6 3.7177 -3.6067 0.0028 10 8 4.4247 -4.7654 0.0029 11 6 3.6758 -5.9824 0.0033 12 6 4.6226 -7.1549 0.0040 13 8 5.8207 -6.9668 0.0036 14 7 4.1379 -8.4124 0.0039 15 6 2.6906 -8.6397 0.0038 16 6 5.0583 -9.5523 0.0040 17 6 5.3737 -9.9430 1.4249 18 1 4.9325 -9.3972 2.2458 19 6 6.2249 -10.9980 1.6770 20 7 6.5006 -11.3387 2.9170 21 14 6.9876 -11.9425 0.2573 22 1 8.2793 -11.3136 -0.1185 23 1 7.2235 -13.3497 0.6688 24 1 6.0665 -11.9151 -0.9072 25 6 2.3245 -3.6471 0.0022 26 6 1.5995 -2.4911 0.0013 27 6 2.2590 -1.2565 0.0014 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6810 2.1101 -0.0007 32 1 5.4664 -2.3706 0.0016 33 1 3.0480 -6.0224 0.8934 34 1 3.0477 -6.0228 -0.8866 35 1 2.3317 -8.6961 -1.0239 36 1 2.4697 -9.5752 0.5176 37 1 2.1936 -7.8168 0.5176 38 1 4.5942 -10.3941 -0.5098 39 1 5.9790 -9.2758 -0.5097 40 1 7.0991 -12.0811 3.0943 41 1 1.8155 -4.5996 0.0025 42 1 0.5202 -2.5286 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043734639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:18 Heat of formation + Delta-G solvation = -113.935388 kcal Electronic energy + Delta-G solvation = -26954.655582 eV Core-core repulsion = 22865.591445 eV Total energy + Delta-G solvation = -4089.064137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.03543 -41.48167 -40.36784 -39.20805 -38.00984 -36.70153 -36.11058 -34.72973 -32.28997 -31.32510 -30.39722 -29.71829 -28.82553 -27.29479 -25.41207 -24.46963 -24.20951 -22.93893 -20.90968 -20.25612 -19.33155 -19.16889 -18.67426 -18.40553 -17.98016 -17.52698 -17.45605 -17.09560 -16.44220 -16.11480 -16.05231 -15.57039 -15.15132 -15.00059 -14.75018 -14.58815 -14.53615 -14.32715 -14.26633 -13.86084 -13.75415 -13.66545 -13.37678 -13.21285 -13.11856 -12.78445 -12.58025 -12.45523 -12.32084 -12.20701 -12.00989 -11.75032 -11.44761 -10.84212 -10.80660 -10.75292 -9.97919 -9.46139 -9.17207 -8.34729 -6.40086 -0.79619 -0.09332 0.46750 1.05696 1.32801 1.37857 1.45087 1.61455 1.72648 1.73111 2.30590 2.58768 2.61830 3.00195 3.11094 3.27643 3.34693 3.46863 3.68646 3.86483 3.97156 4.08319 4.12339 4.25190 4.39506 4.44059 4.55707 4.69260 4.69661 4.80829 4.82778 4.84974 4.94356 4.94958 5.02948 5.06241 5.22139 5.27808 5.37719 5.44510 5.54599 6.04544 6.09548 6.22216 6.35057 6.59275 6.62177 7.18714 7.32108 8.82003 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.002149 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.728808 B =13028.057401 C =13664.245140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.075 3.925 3 C -0.295 4.295 4 C 0.502 3.498 5 O -0.524 6.524 6 O -0.297 6.297 7 C 0.168 3.832 8 C -0.203 4.203 9 C 0.185 3.815 10 O -0.315 6.315 11 C 0.050 3.950 12 C 0.493 3.507 13 O -0.587 6.587 14 N -0.599 5.599 15 C 0.067 3.933 16 C 0.222 3.778 17 C -0.537 4.537 18 H 0.031 0.969 19 C 0.009 3.991 20 N -0.945 5.945 21 Si 0.947 3.053 22 H -0.281 1.281 23 H -0.276 1.276 24 H -0.232 1.232 25 C -0.217 4.217 26 C 0.010 3.990 27 C -0.204 4.204 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.180 0.820 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.016 0.984 40 H 0.268 0.732 41 H 0.183 0.817 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.459 17.486 -10.009 31.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.074 3.926 3 C -0.314 4.314 4 C 0.356 3.644 5 O -0.417 6.417 6 O -0.209 6.209 7 C 0.123 3.877 8 C -0.222 4.222 9 C 0.138 3.862 10 O -0.227 6.227 11 C -0.026 4.026 12 C 0.280 3.720 13 O -0.467 6.467 14 N -0.332 5.332 15 C -0.074 4.074 16 C 0.100 3.900 17 C -0.576 4.576 18 H 0.049 0.951 19 C -0.189 4.189 20 N -0.585 5.585 21 Si 0.770 3.230 22 H -0.207 1.207 23 H -0.201 1.201 24 H -0.155 1.155 25 C -0.235 4.235 26 C -0.008 4.008 27 C -0.205 4.205 28 H 0.130 0.870 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.197 0.803 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.162 0.838 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.200 0.800 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -23.076 17.894 -9.910 30.837 hybrid contribution 1.678 -0.467 0.208 1.754 sum -21.399 17.426 -9.702 29.252 Atomic orbital electron populations 1.21248 0.85128 1.06422 1.05664 1.21933 0.98992 0.89141 0.82497 1.22320 0.90481 1.02251 1.16381 1.19873 0.89728 0.80273 0.74492 1.90931 1.73268 1.27139 1.50314 1.83462 1.45174 1.14650 1.77633 1.18744 0.90896 0.81974 0.96054 1.19499 1.01292 0.87953 1.13460 1.18999 0.91478 0.84466 0.91299 1.86140 1.36563 1.12784 1.87181 1.22865 0.92772 0.79502 1.07506 1.20850 0.89108 0.85059 0.76955 1.90708 1.18960 1.85678 1.51322 1.47856 1.09317 1.04784 1.71225 1.22182 0.77102 1.04295 1.03813 1.19395 0.90091 0.85164 0.95348 1.21568 1.28416 1.15081 0.92487 0.95091 1.25872 0.96270 0.98191 0.98577 1.70048 1.37386 1.29783 1.21312 0.85733 0.79560 0.77700 0.80053 1.20686 1.20099 1.15508 1.21539 0.90587 1.02719 1.08704 1.21239 1.02462 0.87757 0.89294 1.19276 0.90276 0.96598 1.14353 0.87042 0.88421 0.87432 0.80295 0.85080 0.85236 0.83789 0.89224 0.91257 0.88189 0.92276 0.96556 0.92296 0.80030 0.78621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.01 9.64 71.23 0.69 0.70 16 2 C 0.08 0.77 6.08 -18.28 -0.11 0.66 16 3 C -0.30 -4.81 9.62 22.39 0.22 -4.60 16 4 C 0.50 13.48 7.89 68.50 0.54 14.02 16 5 O -0.52 -17.89 17.91 18.97 0.34 -17.55 16 6 O -0.30 -8.43 9.82 14.62 0.14 -8.29 16 7 C 0.17 3.84 6.76 22.98 0.16 4.00 16 8 C -0.20 -5.04 9.94 22.44 0.22 -4.82 16 9 C 0.18 3.91 6.69 22.61 0.15 4.06 16 10 O -0.31 -8.83 9.65 -71.59 -0.69 -9.53 16 11 C 0.05 1.09 3.76 71.24 0.27 1.36 16 12 C 0.49 18.25 7.75 87.66 0.68 18.93 16 13 O -0.59 -29.63 16.08 16.02 0.26 -29.37 16 14 N -0.60 -21.39 2.86 -851.12 -2.43 -23.82 16 15 C 0.07 1.40 10.24 127.77 1.31 2.70 16 16 C 0.22 10.19 4.23 85.63 0.36 10.55 16 17 C -0.54 -30.54 9.94 25.60 0.25 -30.29 16 18 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 19 C 0.01 0.52 5.47 84.66 0.46 0.98 16 20 N -0.95 -59.02 13.96 21.45 0.30 -58.73 16 21 Si 0.95 43.42 27.47 68.60 1.88 45.30 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.23 -9.30 6.54 99.48 0.65 -8.65 16 25 C -0.22 -2.31 8.96 22.13 0.20 -2.11 16 26 C 0.01 0.07 9.36 22.27 0.21 0.28 16 27 C -0.20 -2.89 5.87 -20.12 -0.12 -3.01 16 28 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.10 -0.16 8.10 -2.38 -0.02 -0.18 16 30 H 0.11 -0.48 6.62 -2.39 -0.02 -0.49 16 31 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.13 3.67 8.06 -2.92 -0.02 3.65 16 33 H 0.13 1.89 6.90 -2.39 -0.02 1.87 16 34 H 0.14 1.61 7.61 -2.39 -0.02 1.60 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 37 H 0.10 1.24 6.44 -2.39 -0.02 1.22 16 38 H 0.06 2.41 7.13 -2.39 -0.02 2.40 16 39 H 0.02 0.82 6.85 -2.39 -0.02 0.81 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.18 0.52 6.25 -2.91 -0.02 0.50 16 42 H 0.20 -0.58 6.52 -2.91 -0.02 -0.60 16 Total: -1.00 -95.33 359.93 6.30 -89.03 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: 1.01 Total: -0.48 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.48 Total: 13.42 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.13 Total: -82.55 kcal Atomic # 8 Polarization: -64.78 SS G_CDS: 0.05 Total: -64.73 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.30 kcal Total: -95.33 6.30 -89.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043734639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.903 kcal (2) G-P(sol) polarization free energy of solvation -95.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds