Wall clock time and date at job start Tue Mar 31 2020 16:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47457 * 2 1 4 4 H 1.09006 * 109.46880 * 304.88559 * 3 2 1 5 5 C 1.52997 * 109.47546 * 184.88437 * 3 2 1 6 6 C 1.53000 * 109.46950 * 64.87889 * 3 2 1 7 7 H 1.09003 * 109.47216 * 298.61720 * 6 3 2 8 8 C 1.50693 * 109.47012 * 178.61535 * 6 3 2 9 9 O 1.21215 * 120.00225 * 244.51067 * 8 6 3 10 10 O 1.34315 * 120.00268 * 64.50954 * 8 6 3 11 11 C 1.34922 * 117.00142 * 184.20769 * 10 8 6 12 12 H 1.07995 * 119.99845 * 359.97438 * 11 10 8 13 13 C 1.38750 * 120.00000 * 179.97438 * 11 10 8 14 14 N 1.31449 * 119.99772 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00296 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46793 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47125 * 119.99766 * 15 13 11 18 18 H 1.48494 * 109.47161 * 240.00525 * 15 13 11 19 19 N 1.46503 * 109.46842 * 58.61557 * 6 3 2 20 20 C 1.34524 * 124.45886 * 68.94149 * 19 6 3 21 21 O 1.21449 * 125.71059 * 0.02692 * 20 19 6 22 22 C 1.47812 * 108.57892 * 179.90464 * 20 19 6 23 23 C 1.38568 * 134.29822 * 180.09952 * 22 20 19 24 24 C 1.38613 * 119.71861 * 180.27231 * 23 22 20 25 25 C 1.38226 * 120.46078 * 359.97438 * 24 23 22 26 26 C 1.38617 * 120.45805 * 0.02562 * 25 24 23 27 27 C 1.38556 * 119.72098 * 359.97438 * 26 25 24 28 28 C 1.34519 * 124.46039 * 249.23945 * 19 6 3 29 29 O 1.21450 * 125.71297 * 359.96108 * 28 19 6 30 30 H 1.09000 * 109.47302 * 183.70070 * 1 2 3 31 31 H 1.09000 * 109.47176 * 303.70124 * 1 2 3 32 32 H 1.09000 * 109.47551 * 63.69338 * 1 2 3 33 33 H 1.09002 * 109.47142 * 239.99953 * 2 1 3 34 34 H 1.09000 * 109.47393 * 119.99931 * 2 1 3 35 35 H 1.09003 * 109.46443 * 317.11317 * 5 3 2 36 36 H 1.09000 * 109.47255 * 77.11412 * 5 3 2 37 37 H 1.08995 * 109.47352 * 197.11538 * 5 3 2 38 38 H 0.97002 * 119.99316 * 179.97438 * 14 13 11 39 39 H 1.07999 * 120.14380 * 0.25128 * 23 22 20 40 40 H 1.07996 * 119.77049 * 180.02562 * 24 23 22 41 41 H 1.08002 * 119.77602 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.13968 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9810 -0.8430 5 6 3.5650 1.4443 -0.1228 6 6 1.6327 2.1275 1.3061 7 1 0.5455 2.1481 1.3818 8 6 2.1642 3.5375 1.3208 9 8 2.9924 3.8645 2.1432 10 8 1.7202 4.4320 0.4226 11 6 2.2992 5.6506 0.4340 12 1 3.0822 5.8698 1.1448 13 6 1.8888 6.6222 -0.4676 14 7 0.9355 6.3555 -1.3324 15 14 2.6899 8.3096 -0.4514 16 1 3.7276 8.3546 0.6100 17 1 3.3200 8.5710 -1.7704 18 1 1.6595 9.3441 -0.1811 19 7 2.1872 1.3846 2.4406 20 6 3.4969 1.3191 2.7404 21 8 4.3933 1.8584 2.1234 22 6 3.6623 0.4833 3.9483 23 6 4.7518 0.0750 4.7009 24 6 4.5572 -0.7370 5.8073 25 6 3.2846 -1.1413 6.1646 26 6 2.1853 -0.7407 5.4212 27 6 2.3646 0.0710 4.3127 28 6 1.4542 0.6737 3.3162 29 8 0.2464 0.5482 3.2925 30 1 -0.3634 -1.0255 0.0663 31 1 -0.3633 0.5702 0.8550 32 1 -0.3634 0.4554 -0.9212 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9824 0.6721 0.5235 36 1 3.8465 1.2441 -1.1566 37 1 3.9526 2.4178 0.1772 38 1 0.6483 7.0349 -1.9624 39 1 5.7484 0.3879 4.4265 40 1 5.4056 -1.0554 6.3947 41 1 3.1456 -1.7737 7.0290 42 1 1.1932 -1.0593 5.7052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049782678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:05 Heat of formation + Delta-G solvation = -108.448336 kcal Electronic energy + Delta-G solvation = -29691.119850 eV Core-core repulsion = 25602.293649 eV Total energy + Delta-G solvation = -4088.826201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.71825 -41.21693 -39.77061 -39.57400 -37.89726 -37.18575 -36.51099 -34.36126 -32.84983 -32.10132 -31.24746 -29.38591 -27.38623 -26.16161 -24.89164 -24.63756 -23.19152 -22.53338 -21.68856 -20.43318 -19.94045 -19.09448 -18.74669 -18.19260 -17.70039 -17.27215 -16.91981 -16.37866 -16.32633 -16.21786 -15.68848 -15.59567 -15.39545 -15.31192 -15.01816 -15.00972 -14.44493 -14.11478 -13.90790 -13.73091 -13.56468 -13.22810 -13.13406 -13.07344 -12.72188 -12.57118 -12.43250 -12.25611 -12.11660 -11.98906 -11.90107 -11.80867 -11.55707 -11.37816 -11.06504 -10.75019 -10.68236 -10.18967 -10.16343 -8.59798 -6.39785 -0.95687 0.01911 1.01544 1.03818 1.18252 1.30511 1.47920 1.50755 1.81316 2.08395 2.45678 2.64364 2.73829 2.90172 3.23803 3.46466 3.57465 3.62853 3.72503 4.02614 4.08549 4.16052 4.20932 4.26954 4.27455 4.40290 4.50366 4.55192 4.64395 4.67748 4.80066 4.86778 4.97124 5.00032 5.02440 5.08432 5.18115 5.24029 5.26479 5.28866 5.36430 5.58786 5.73915 5.75834 6.15770 6.48226 6.61622 6.84253 7.62140 8.60484 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.004129 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.766316 B = 6780.413164 C = 7582.391955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C -0.092 4.092 4 H 0.093 0.907 5 C -0.138 4.138 6 C 0.170 3.830 7 H 0.130 0.870 8 C 0.392 3.608 9 O -0.559 6.559 10 O -0.232 6.232 11 C -0.419 4.419 12 H 0.076 0.924 13 C 0.001 3.999 14 N -0.896 5.896 15 Si 1.016 2.984 16 H -0.269 1.269 17 H -0.256 1.256 18 H -0.257 1.257 19 N -0.563 5.563 20 C 0.558 3.442 21 O -0.463 6.463 22 C -0.154 4.154 23 C -0.053 4.053 24 C -0.078 4.078 25 C -0.082 4.082 26 C -0.040 4.040 27 C -0.158 4.158 28 C 0.571 3.429 29 O -0.488 6.488 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.281 0.719 39 H 0.147 0.853 40 H 0.184 0.816 41 H 0.187 0.813 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.338 -19.834 12.309 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.140 4.140 3 C -0.112 4.112 4 H 0.111 0.889 5 C -0.195 4.195 6 C 0.067 3.933 7 H 0.148 0.852 8 C 0.237 3.763 9 O -0.455 6.455 10 O -0.139 6.139 11 C -0.495 4.495 12 H 0.094 0.906 13 C -0.200 4.200 14 N -0.533 5.533 15 Si 0.835 3.165 16 H -0.193 1.193 17 H -0.180 1.180 18 H -0.181 1.181 19 N -0.305 5.305 20 C 0.348 3.652 21 O -0.334 6.334 22 C -0.158 4.158 23 C -0.071 4.071 24 C -0.096 4.096 25 C -0.099 4.099 26 C -0.059 4.059 27 C -0.162 4.162 28 C 0.363 3.637 29 O -0.362 6.362 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.165 0.835 40 H 0.201 0.799 41 H 0.205 0.795 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.226 -19.355 11.917 23.119 hybrid contribution 0.080 1.556 -0.479 1.629 sum 4.306 -17.799 11.438 21.591 Atomic orbital electron populations 1.21855 0.94679 1.02725 1.01991 1.21498 0.96848 0.92766 1.02861 1.21587 0.97640 0.98298 0.93632 0.88925 1.22079 0.93804 1.01681 1.01929 1.20668 1.00084 0.85019 0.87536 0.85213 1.23827 0.82205 0.89029 0.81204 1.90570 1.34405 1.80439 1.40093 1.83862 1.56758 1.22556 1.50748 1.21394 1.20568 0.86617 1.20916 0.90607 1.26499 0.96531 1.03349 0.93610 1.70074 1.27701 1.36627 1.18881 0.84599 0.78194 0.74461 0.79253 1.19315 1.18037 1.18095 1.46344 1.09841 1.46508 1.27838 1.18868 0.81643 0.79756 0.84931 1.90812 1.44916 1.43408 1.54242 1.20566 0.96673 1.01563 0.96971 1.21147 0.97639 0.94902 0.93443 1.21956 0.99680 0.93757 0.94176 1.21980 0.90694 0.97775 0.99490 1.21201 1.02343 0.92265 0.90075 1.20475 0.92432 1.03898 0.99371 1.18875 0.87038 0.77068 0.80761 1.90748 1.13140 1.59253 1.73044 0.90685 0.93867 0.91830 0.88817 0.92843 0.92232 0.91152 0.94598 0.91002 0.83497 0.79897 0.79529 0.82202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 9.75 71.98 0.70 -3.49 16 2 C -0.10 -2.90 5.23 30.59 0.16 -2.74 16 3 C -0.09 -3.43 2.27 -10.79 -0.02 -3.45 16 4 H 0.09 3.65 8.14 -2.38 -0.02 3.63 16 5 C -0.14 -5.34 7.38 71.98 0.53 -4.81 16 6 C 0.17 7.31 2.42 44.24 0.11 7.42 16 7 H 0.13 5.44 6.03 -2.39 -0.01 5.43 16 8 C 0.39 21.53 5.48 71.23 0.39 21.92 16 9 O -0.56 -33.30 12.98 27.96 0.36 -32.93 16 10 O -0.23 -14.33 9.74 14.80 0.14 -14.19 16 11 C -0.42 -26.61 9.64 67.94 0.66 -25.95 16 12 H 0.08 4.97 6.86 -2.91 -0.02 4.95 16 13 C 0.00 0.06 5.49 84.87 0.47 0.53 16 14 N -0.90 -53.77 13.67 21.62 0.30 -53.47 16 15 Si 1.02 45.04 29.55 68.60 2.03 47.06 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 19 N -0.56 -21.73 1.64 -744.38 -1.22 -22.95 16 20 C 0.56 21.48 5.73 86.82 0.50 21.98 16 21 O -0.46 -20.85 11.55 18.11 0.21 -20.64 16 22 C -0.15 -4.34 6.40 -20.00 -0.13 -4.46 16 23 C -0.05 -0.99 10.09 22.44 0.23 -0.77 16 24 C -0.08 -0.75 10.04 22.36 0.22 -0.53 16 25 C -0.08 -0.69 10.04 22.36 0.22 -0.47 16 26 C -0.04 -0.63 10.09 22.44 0.23 -0.41 16 27 C -0.16 -4.11 6.41 -20.00 -0.13 -4.24 16 28 C 0.57 19.36 7.53 86.82 0.65 20.02 16 29 O -0.49 -17.59 16.60 -3.56 -0.06 -17.64 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.04 1.34 5.54 -2.39 -0.01 1.33 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.05 1.52 7.01 -2.39 -0.02 1.50 16 35 H 0.06 2.16 5.90 -2.39 -0.01 2.15 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.03 1.72 5.34 -2.39 -0.01 1.71 16 38 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 41 H 0.19 -0.06 8.06 -2.91 -0.02 -0.08 16 42 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -85.27 348.97 7.61 -77.66 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.07 Total: 16.56 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 4.78 Total: 20.54 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -0.92 Total: -76.42 kcal Atomic # 8 Polarization: -86.06 SS G_CDS: 0.66 Total: -85.41 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -85.27 7.61 -77.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049782678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.788 kcal (2) G-P(sol) polarization free energy of solvation -85.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds