Wall clock time and date at job start Tue Mar 31 2020 17:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 N 1.46504 * 109.47534 * 179.97438 * 3 2 1 5 5 C 1.37095 * 119.99670 * 262.99562 * 4 3 2 6 6 H 1.08003 * 119.99993 * 142.20921 * 5 4 3 7 7 C 1.38954 * 120.00266 * 322.19551 * 5 4 3 8 8 N 1.31408 * 119.99653 * 157.13352 * 7 5 4 9 9 Si 1.86801 * 119.99838 * 337.14005 * 7 5 4 10 10 H 1.48495 * 109.46878 * 95.20125 * 9 7 5 11 11 H 1.48499 * 109.46628 * 215.20139 * 9 7 5 12 12 H 1.48497 * 109.46986 * 335.19973 * 9 7 5 13 13 C 1.34774 * 119.99973 * 82.98812 * 4 3 2 14 14 O 1.21286 * 119.99911 * 180.02562 * 13 4 3 15 15 C 1.50705 * 119.99831 * 0.02562 * 13 4 3 16 16 O 1.42902 * 109.46858 * 179.97438 * 15 13 4 17 17 C 1.35747 * 116.99661 * 180.02562 * 16 15 13 18 18 C 1.39367 * 119.73112 * 0.25073 * 17 16 15 19 19 C 1.36456 * 120.43116 * 180.25620 * 18 17 16 20 20 C 1.39966 * 119.79536 * 359.75069 * 19 18 17 21 21 C 1.46436 * 120.98709 * 180.02562 * 20 19 18 22 22 C 1.35845 * 118.19430 * 179.97438 * 21 20 19 23 23 C 1.41005 * 119.82533 * 359.97438 * 22 21 20 24 24 O 1.21791 * 119.15666 * 179.97438 * 23 22 21 25 25 O 1.34223 * 121.68576 * 0.02562 * 23 22 21 26 26 C 1.35027 * 121.47021 * 359.97438 * 25 23 22 27 27 C 1.38522 * 119.72471 * 180.02562 * 17 16 15 28 28 H 1.08996 * 109.47318 * 60.00036 * 1 2 3 29 29 H 1.09006 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47417 * 300.00191 * 1 2 3 31 31 H 1.08997 * 109.47564 * 240.00265 * 2 1 3 32 32 H 1.09003 * 109.47001 * 119.99724 * 2 1 3 33 33 H 1.09002 * 109.47125 * 59.99629 * 3 2 1 34 34 H 1.09000 * 109.47460 * 300.00305 * 3 2 1 35 35 H 0.97007 * 119.99275 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.46445 * 60.00351 * 15 13 4 37 37 H 1.08999 * 109.47351 * 300.00520 * 15 13 4 38 38 H 1.08008 * 119.78313 * 359.97438 * 18 17 16 39 39 H 1.07999 * 120.10897 * 179.77291 * 19 18 17 40 40 H 1.07996 * 120.90015 * 359.97438 * 21 20 19 41 41 H 1.07999 * 120.08676 * 179.97438 * 22 21 20 42 42 H 1.07994 * 120.10556 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1899 1.5876 1.1793 6 1 5.1000 1.0308 1.3471 7 6 3.7134 2.4512 2.1581 8 7 4.0658 2.2810 3.4126 9 14 2.5717 3.8538 1.6906 10 1 1.1618 3.4302 1.8853 11 1 2.8577 5.0317 2.5486 12 1 2.7881 4.2145 0.2665 13 6 4.1793 1.3000 -1.1575 14 8 5.3922 1.2996 -1.1569 15 6 3.4263 1.1410 -2.4532 16 8 4.3554 1.0088 -3.5309 17 6 3.8371 0.8565 -4.7763 18 6 2.4546 0.8408 -4.9523 19 6 1.9182 0.6834 -6.1970 20 6 2.7616 0.5420 -7.3051 21 6 2.2140 0.3721 -8.6526 22 6 3.0844 0.2406 -9.6872 23 6 4.4729 0.2707 -9.4437 24 8 5.2423 0.1511 -10.3802 25 8 4.9684 0.4267 -8.2061 26 6 4.1583 0.5629 -7.1344 27 6 4.6866 0.7228 -5.8622 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.7328 2.8837 4.0959 36 1 2.8001 2.0176 -2.6193 37 1 2.7993 0.2509 -2.4023 38 1 1.8037 0.9493 -4.0973 39 1 0.8461 0.6682 -6.3270 40 1 1.1471 0.3520 -8.8192 41 1 2.7138 0.1133 -10.6936 42 1 5.7567 0.7393 -5.7181 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060542093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:35 Heat of formation + Delta-G solvation = -105.849507 kcal Electronic energy + Delta-G solvation = -27555.932086 eV Core-core repulsion = 23467.218579 eV Total energy + Delta-G solvation = -4088.713507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.96635 -41.45929 -40.38650 -39.18607 -37.81967 -37.25649 -35.20340 -34.72613 -33.33519 -32.16924 -30.72220 -29.66678 -27.40766 -26.45355 -25.37094 -25.01319 -23.95392 -22.75437 -21.38837 -20.45576 -19.28161 -18.98184 -18.65489 -18.36898 -17.93679 -17.58919 -17.36183 -17.27213 -16.43924 -16.32090 -15.83531 -15.52252 -15.41520 -15.03212 -14.91684 -14.73493 -14.58580 -14.54507 -14.27134 -14.10820 -13.73891 -13.32761 -13.29197 -13.10838 -12.91762 -12.55045 -12.44486 -12.39053 -12.23832 -12.10692 -11.86920 -11.44619 -11.43705 -11.06125 -11.03660 -10.48124 -9.94287 -9.77886 -9.12842 -8.54453 -6.18173 -0.73208 -0.05353 0.53240 1.10616 1.18304 1.32003 1.44708 1.77828 1.80072 1.85256 2.16286 2.65542 2.77098 2.94451 3.16706 3.42938 3.49707 3.58096 3.74421 3.87293 3.95463 4.02354 4.12608 4.18321 4.22917 4.44256 4.47217 4.62576 4.65550 4.69124 4.71098 4.76431 5.03621 5.07721 5.13523 5.18003 5.23683 5.35475 5.36927 5.45763 5.57074 5.99910 6.07102 6.13770 6.37715 6.51552 6.88621 7.21092 7.75702 8.62540 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002616 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.817036 B =10698.972860 C =11347.264993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.075 3.925 4 N -0.466 5.466 5 C -0.336 4.336 6 H 0.040 0.960 7 C 0.014 3.986 8 N -0.907 5.907 9 Si 0.945 3.055 10 H -0.230 1.230 11 H -0.291 1.291 12 H -0.253 1.253 13 C 0.451 3.549 14 O -0.609 6.609 15 C 0.053 3.947 16 O -0.314 6.314 17 C 0.180 3.820 18 C -0.224 4.224 19 C 0.017 3.983 20 C -0.209 4.209 21 C 0.056 3.944 22 C -0.283 4.283 23 C 0.499 3.501 24 O -0.524 6.524 25 O -0.297 6.297 26 C 0.167 3.833 27 C -0.205 4.205 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.281 0.719 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.175 0.825 39 H 0.201 0.799 40 H 0.212 0.788 41 H 0.184 0.816 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.838 -2.384 -20.180 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.046 4.046 4 N -0.188 5.188 5 C -0.464 4.464 6 H 0.058 0.942 7 C -0.189 4.189 8 N -0.543 5.543 9 Si 0.767 3.233 10 H -0.154 1.154 11 H -0.218 1.218 12 H -0.176 1.176 13 C 0.240 3.760 14 O -0.493 6.493 15 C -0.024 4.024 16 O -0.226 6.226 17 C 0.133 3.867 18 C -0.243 4.243 19 C 0.000 4.000 20 C -0.210 4.210 21 C 0.038 3.962 22 C -0.302 4.302 23 C 0.352 3.648 24 O -0.416 6.416 25 O -0.209 6.209 26 C 0.122 3.878 27 C -0.225 4.225 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.193 0.807 39 H 0.218 0.782 40 H 0.229 0.771 41 H 0.202 0.798 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.469 -2.386 -20.296 28.225 hybrid contribution 1.185 0.498 0.793 1.510 sum -18.285 -1.888 -19.503 26.800 Atomic orbital electron populations 1.21715 0.92380 1.03001 1.03004 1.21901 0.98057 0.95219 1.02213 1.22356 0.79294 0.99409 1.03564 1.43766 1.05982 1.64666 1.04382 1.18563 1.10031 1.26152 0.91668 0.94241 1.26205 0.99522 0.99231 0.93947 1.69882 1.45844 1.37450 1.01167 0.85896 0.79838 0.77986 0.79606 1.15367 1.21841 1.17643 1.20837 0.87964 0.81576 0.85603 1.90591 1.16738 1.54839 1.87082 1.22851 0.90849 1.06146 0.82543 1.86155 1.36804 1.85975 1.13621 1.19101 0.93028 0.91235 0.83340 1.21536 0.92026 1.09066 1.01637 1.21258 1.01903 0.88649 0.88231 1.19450 0.90486 1.13678 0.97403 1.23322 1.02938 0.82494 0.87432 1.22553 0.89484 1.13922 1.04218 1.20052 0.91508 0.74495 0.78739 1.90938 1.63596 1.49816 1.37265 1.83461 1.43967 1.76512 1.16998 1.18755 0.88954 0.95887 0.84167 1.19483 1.01170 1.13370 0.88452 0.89583 0.91222 0.93338 0.90550 0.94116 0.91539 0.87319 0.90904 0.85544 0.85548 0.80724 0.78161 0.77133 0.79838 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 71.98 0.71 -1.68 16 2 C -0.14 -3.46 6.13 30.59 0.19 -3.28 16 3 C 0.08 2.37 3.74 86.38 0.32 2.69 16 4 N -0.47 -20.82 2.18 -635.53 -1.39 -22.21 16 5 C -0.34 -19.15 9.35 84.04 0.79 -18.36 16 6 H 0.04 2.70 7.92 -2.91 -0.02 2.67 16 7 C 0.01 0.75 5.24 84.93 0.45 1.19 16 8 N -0.91 -52.52 13.96 21.66 0.30 -52.22 16 9 Si 0.94 38.74 25.12 68.60 1.72 40.46 16 10 H -0.23 -7.82 6.67 99.48 0.66 -7.16 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 13 C 0.45 19.95 7.65 87.66 0.67 20.62 16 14 O -0.61 -34.71 16.37 15.99 0.26 -34.45 16 15 C 0.05 1.48 3.82 71.24 0.27 1.75 16 16 O -0.31 -10.07 9.65 -71.69 -0.69 -10.77 16 17 C 0.18 4.26 6.69 22.61 0.15 4.41 16 18 C -0.22 -2.87 8.96 22.13 0.20 -2.67 16 19 C 0.02 0.12 9.78 22.27 0.22 0.34 16 20 C -0.21 -2.73 5.87 -20.11 -0.12 -2.85 16 21 C 0.06 0.39 10.12 23.85 0.24 0.63 16 22 C -0.28 -3.89 9.93 22.39 0.22 -3.67 16 23 C 0.50 12.72 7.89 68.50 0.54 13.26 16 24 O -0.52 -17.38 17.91 18.98 0.34 -17.05 16 25 O -0.30 -8.26 9.82 14.65 0.14 -8.12 16 26 C 0.17 3.80 6.76 22.98 0.16 3.95 16 27 C -0.21 -5.36 9.94 22.44 0.22 -5.14 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.65 6.39 -2.39 -0.02 1.63 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 2.30 3.72 -2.39 -0.01 2.29 16 34 H 0.11 2.31 6.74 -2.39 -0.02 2.30 16 35 H 0.28 14.86 8.31 -92.70 -0.77 14.09 16 36 H 0.13 2.45 6.91 -2.38 -0.02 2.43 16 37 H 0.13 2.46 5.86 -2.39 -0.01 2.45 16 38 H 0.18 1.11 6.24 -2.91 -0.02 1.09 16 39 H 0.20 -0.71 8.06 -2.91 -0.02 -0.74 16 40 H 0.21 -0.95 8.06 -2.91 -0.02 -0.97 16 41 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -91.30 354.55 6.94 -84.35 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.02 Total: 8.79 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 5.23 Total: 11.20 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -1.09 Total: -74.43 kcal Atomic # 8 Polarization: -70.43 SS G_CDS: 0.05 Total: -70.38 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.72 Total: 40.46 kcal Total: -91.30 6.94 -84.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.495 kcal (2) G-P(sol) polarization free energy of solvation -91.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds