Wall clock time and date at job start Tue Mar 31 2020 15:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.46219 * 126.95909 * 2 1 4 4 C 1.39720 * 134.18467 * 0.02562 * 3 2 1 5 5 C 1.36609 * 119.71309 * 179.97438 * 4 3 2 6 6 C 1.38845 * 120.44307 * 359.97438 * 5 4 3 7 7 C 1.37796 * 120.74724 * 0.04539 * 6 5 4 8 8 C 1.50703 * 120.07026 * 179.97438 * 7 6 5 9 9 C 1.39034 * 119.85907 * 0.25362 * 7 6 5 10 10 O 1.34706 * 133.23287 * 179.72707 * 9 7 6 11 11 C 1.34967 * 110.85958 * 179.97438 * 10 9 7 12 12 C 1.46808 * 125.13845 * 179.97438 * 11 10 9 13 13 O 1.21580 * 119.99691 * 180.02562 * 12 11 10 14 14 O 1.34854 * 120.00119 * 0.02562 * 12 11 10 15 15 C 1.45203 * 117.00128 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47222 * 179.97438 * 15 14 12 17 17 O 1.21272 * 119.99868 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99875 * 179.97438 * 16 15 14 19 19 C 1.46494 * 120.00089 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47602 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99536 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00129 * 180.02562 * 20 19 18 23 23 N 1.31505 * 120.00153 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99614 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47274 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47236 * 119.99954 * 24 22 20 27 27 H 1.48501 * 109.46840 * 239.99869 * 24 22 20 28 28 H 1.09000 * 109.47119 * 90.00057 * 1 2 3 29 29 H 1.09000 * 109.46775 * 209.99703 * 1 2 3 30 30 H 1.08995 * 109.47566 * 329.99861 * 1 2 3 31 31 H 1.08003 * 120.14244 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.78328 * 179.97438 * 5 4 3 33 33 H 1.07997 * 119.62551 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47152 * 89.99848 * 8 7 6 35 35 H 1.09001 * 109.46980 * 329.99948 * 8 7 6 36 36 H 1.09004 * 109.47113 * 209.99929 * 8 7 6 37 37 H 1.08998 * 109.47009 * 300.00443 * 15 14 12 38 38 H 1.09002 * 109.46887 * 60.00034 * 15 14 12 39 39 H 0.97006 * 120.00329 * 0.02562 * 18 16 15 40 40 H 1.08998 * 109.47499 * 300.00630 * 19 18 16 41 41 H 1.09002 * 109.46940 * 60.00553 * 19 18 16 42 42 H 0.96998 * 120.00109 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3861 1.1684 0.0000 4 6 2.1710 2.5489 0.0004 5 6 3.2391 3.4006 0.0008 6 6 4.5354 2.9033 0.0013 7 6 4.7690 1.5453 0.0005 8 6 6.1824 1.0222 0.0004 9 6 3.6981 0.6588 -0.0062 10 8 3.6132 -0.6856 -0.0133 11 6 2.3242 -1.0857 -0.0173 12 6 1.8732 -2.4828 -0.0258 13 8 0.6844 -2.7377 -0.0293 14 8 2.7774 -3.4833 -0.0296 15 6 2.2596 -4.8398 -0.0374 16 6 3.4078 -5.8158 -0.0414 17 8 4.5500 -5.4083 -0.0375 18 7 3.1653 -7.1415 -0.0482 19 6 4.2815 -8.0903 -0.0514 20 6 3.7441 -9.4983 -0.0596 21 1 2.6777 -9.6692 -0.0626 22 6 4.6138 -10.5681 -0.0634 23 7 5.9123 -10.3600 -0.0593 24 14 3.9475 -12.3133 -0.0743 25 1 2.4629 -12.2764 -0.0768 26 1 4.4277 -13.0189 -1.2895 27 1 4.4223 -13.0319 1.1355 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.1647 2.9410 0.0013 32 1 3.0741 4.4680 0.0008 33 1 5.3701 3.5886 0.0020 34 1 6.5229 0.8955 1.0281 35 1 6.8321 1.7311 -0.5128 36 1 6.2143 0.0618 -0.5140 37 1 1.6486 -5.0006 0.8508 38 1 1.6513 -4.9914 -0.9291 39 1 2.2517 -7.4675 -0.0509 40 1 4.8923 -7.9298 -0.9398 41 1 4.8899 -7.9385 0.8401 42 1 6.5241 -11.1127 -0.0616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064020090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:35 Heat of formation + Delta-G solvation = -98.695677 kcal Electronic energy + Delta-G solvation = -26686.278389 eV Core-core repulsion = 22597.875095 eV Total energy + Delta-G solvation = -4088.403294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.89336 -40.52541 -38.77598 -38.39056 -36.65120 -34.63084 -34.26771 -32.43044 -32.42353 -30.63732 -29.36636 -28.03208 -27.27887 -26.64705 -24.37699 -22.98425 -22.58263 -21.22109 -20.05354 -19.91685 -18.70394 -17.58534 -17.43482 -17.12814 -16.77262 -16.22875 -16.18196 -15.62481 -15.20503 -15.00785 -14.62600 -14.31471 -14.00630 -13.89374 -13.75266 -13.47092 -13.16273 -13.10330 -13.01886 -12.74250 -12.67191 -12.50431 -12.23681 -12.01879 -11.94752 -11.80596 -11.34806 -11.00430 -10.96668 -10.89370 -10.81118 -10.35727 -10.11617 -9.43407 -9.21176 -9.02486 -8.80021 -8.47588 -8.00657 -6.20604 -4.28050 0.08994 0.95705 1.33132 1.88122 2.53047 2.56042 3.15017 3.21802 3.26014 3.28956 3.31956 3.81416 4.09057 4.16551 4.32247 4.39366 4.49437 4.62915 4.80347 4.91489 4.97771 5.00813 5.12873 5.14983 5.17490 5.30014 5.32373 5.33890 5.37659 5.49702 5.54560 5.73962 5.84330 5.94363 5.97929 6.04058 6.11822 6.19301 6.69269 7.20898 7.27942 7.41663 7.44698 7.60356 7.90737 8.47797 8.69797 8.94506 9.38378 10.89571 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.023442 B = 0.002050 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.126057 B =13652.878015 C =14815.936099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.067 4.067 3 C -0.143 4.143 4 C -0.063 4.063 5 C -0.135 4.135 6 C -0.085 4.085 7 C -0.073 4.073 8 C -0.118 4.118 9 C 0.080 3.920 10 O -0.163 6.163 11 C -0.014 4.014 12 C 0.549 3.451 13 O -0.482 6.482 14 O -0.314 6.314 15 C 0.048 3.952 16 C 0.499 3.501 17 O -0.531 6.531 18 N -0.706 5.706 19 C 0.251 3.749 20 C -0.545 4.545 21 H 0.065 0.935 22 C 0.063 3.937 23 N -0.884 5.884 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.393 0.607 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 28.184 0.150 29.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.069 4.069 3 C -0.143 4.143 4 C -0.081 4.081 5 C -0.153 4.153 6 C -0.103 4.103 7 C -0.074 4.074 8 C -0.174 4.174 9 C 0.031 3.969 10 O -0.064 6.064 11 C -0.062 4.062 12 C 0.393 3.607 13 O -0.372 6.372 14 O -0.228 6.228 15 C -0.029 4.029 16 C 0.282 3.718 17 O -0.408 6.408 18 N -0.356 5.356 19 C 0.131 3.869 20 C -0.583 4.583 21 H 0.083 0.917 22 C -0.140 4.140 23 N -0.521 5.521 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.226 0.774 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.187 28.033 0.150 29.204 hybrid contribution -0.836 -1.215 -0.011 1.475 sum -9.023 26.818 0.139 28.296 Atomic orbital electron populations 1.20511 0.87061 1.04206 1.03490 1.21419 0.97039 0.89209 0.99229 1.19726 0.91941 0.94297 1.08385 1.20310 0.99862 0.89999 0.97894 1.20779 0.92073 1.00082 1.02398 1.20949 0.97656 0.93056 0.98620 1.18932 0.93678 0.91188 1.03564 1.20808 0.91228 1.02209 1.03182 1.19607 0.95155 0.81035 1.01137 1.84177 1.26111 1.20513 1.75561 1.20314 0.81979 0.91383 1.12502 1.19288 0.84036 0.83715 0.73657 1.90910 1.16454 1.83409 1.46453 1.86732 1.37915 1.15257 1.82919 1.23000 0.96786 0.78153 1.04985 1.19824 0.89412 0.83626 0.78956 1.90727 1.22370 1.78362 1.49340 1.46354 1.12209 1.04585 1.72460 1.19191 0.84089 0.85583 0.98078 1.21243 0.93513 0.90127 1.53439 0.91679 1.24960 0.94730 0.99735 0.94620 1.69978 1.01641 1.31801 1.48719 0.86331 0.79050 0.83572 0.77777 1.19595 1.20766 1.20771 0.89977 0.88965 0.90800 0.85152 0.84957 0.84435 0.90542 0.90833 0.90716 0.88031 0.88036 0.77384 0.95220 0.95213 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.79 36.01 0.35 -0.49 16 2 C -0.07 -0.77 6.39 -102.26 -0.65 -1.43 16 3 C -0.14 -1.57 6.37 -105.19 -0.67 -2.24 16 4 C -0.06 -0.50 10.06 -39.62 -0.40 -0.90 16 5 C -0.14 -0.91 9.98 -39.95 -0.40 -1.31 16 6 C -0.08 -0.62 9.67 -39.52 -0.38 -1.00 16 7 C -0.07 -0.72 5.89 -104.49 -0.62 -1.34 16 8 C -0.12 -1.01 10.02 36.01 0.36 -0.65 16 9 C 0.08 0.99 7.07 -38.34 -0.27 0.71 16 10 O -0.16 -2.41 10.60 1.95 0.02 -2.39 16 11 C -0.01 -0.19 7.10 -36.96 -0.26 -0.45 16 12 C 0.55 8.16 7.94 34.20 0.27 8.43 16 13 O -0.48 -7.01 14.43 -19.33 -0.28 -7.28 16 14 O -0.31 -5.32 9.77 -48.41 -0.47 -5.80 16 15 C 0.05 0.73 5.96 36.01 0.21 0.95 16 16 C 0.50 10.09 7.91 -10.99 -0.09 10.00 16 17 O -0.53 -13.24 16.50 -14.10 -0.23 -13.47 16 18 N -0.71 -14.56 5.55 -61.48 -0.34 -14.90 16 19 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 20 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 21 H 0.07 1.62 7.60 -52.49 -0.40 1.22 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 23 N -0.88 -25.85 13.29 55.43 0.74 -25.11 16 24 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.90 6.41 -51.93 -0.33 0.57 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 32 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.39 6.74 8.32 -40.82 -0.34 6.40 16 40 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -34.31 373.27 -8.22 -42.53 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.27 Total: 1.58 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -2.98 Total: 3.58 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.40 Total: -40.01 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.96 Total: -28.94 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.31 -8.22 -42.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064020090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.167 kcal (2) G-P(sol) polarization free energy of solvation -34.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds