Wall clock time and date at job start Tue Mar 31 2020 17:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.47471 * 2 1 4 4 C 1.53007 * 109.46916 * 239.99640 * 2 1 3 5 5 O 1.42895 * 109.47305 * 305.00175 * 4 2 1 6 6 C 1.42896 * 113.99884 * 179.97438 * 5 4 2 7 7 C 1.53008 * 109.47255 * 179.97438 * 6 5 4 8 8 F 1.39896 * 109.46725 * 60.00540 * 7 6 5 9 9 F 1.39895 * 109.47040 * 180.02562 * 7 6 5 10 10 F 1.39896 * 109.47057 * 300.00588 * 7 6 5 11 11 N 1.46504 * 109.47022 * 120.00175 * 2 1 3 12 12 C 1.34770 * 120.00213 * 274.99747 * 11 2 1 13 13 O 1.21558 * 119.99773 * 0.02562 * 12 11 2 14 14 C 1.47880 * 120.00556 * 179.97438 * 12 11 2 15 15 C 1.39924 * 120.02400 * 359.73015 * 14 12 11 16 16 C 1.38321 * 120.35757 * 179.71265 * 15 14 12 17 17 C 1.37747 * 120.41610 * 0.56013 * 16 15 14 18 18 C 1.40751 * 120.03598 * 359.71771 * 17 16 15 19 19 C 1.41442 * 120.17512 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00486 * 24.43545 * 19 18 17 21 21 C 1.39940 * 119.99911 * 204.43885 * 19 18 17 22 22 N 1.30830 * 119.99654 * 17.87672 * 21 19 18 23 23 Si 1.86797 * 120.00323 * 197.88165 * 21 19 18 24 24 H 1.48500 * 109.47009 * 89.99395 * 23 21 19 25 25 H 1.48498 * 109.47341 * 209.99731 * 23 21 19 26 26 H 1.48502 * 109.46813 * 330.00133 * 23 21 19 27 27 C 1.38998 * 120.02836 * 179.97438 * 14 12 11 28 28 H 1.08996 * 109.46876 * 300.00071 * 1 2 3 29 29 H 1.08995 * 109.46899 * 59.99674 * 1 2 3 30 30 H 1.09004 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46834 * 185.00368 * 4 2 1 32 32 H 1.08996 * 109.46458 * 65.00322 * 4 2 1 33 33 H 1.08996 * 109.47729 * 300.00261 * 6 5 4 34 34 H 1.09007 * 109.47133 * 60.00846 * 6 5 4 35 35 H 0.97000 * 120.00016 * 95.00029 * 11 2 1 36 36 H 1.08007 * 119.81468 * 359.97438 * 15 14 12 37 37 H 1.08004 * 119.79231 * 180.25449 * 16 15 14 38 38 H 1.07997 * 119.98344 * 179.74059 * 17 16 15 39 39 H 0.97009 * 119.99642 * 179.97438 * 22 21 19 40 40 H 1.08002 * 120.19817 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7214 -1.2493 5 8 1.4702 -2.0304 -1.3094 6 6 1.8835 -2.7926 -2.4453 7 6 1.2161 -4.1689 -2.4064 8 9 -0.1740 -4.0137 -2.4298 9 9 1.6213 -4.9152 -3.5181 10 9 1.5913 -4.8361 -1.2354 11 7 2.0183 -0.6907 1.1962 12 6 2.1471 -0.0184 2.3571 13 8 1.8576 1.1609 2.4118 14 6 2.6395 -0.7156 3.5647 15 6 2.9665 -2.0748 3.5041 16 6 3.4332 -2.7323 4.6279 17 6 3.5707 -2.0602 5.8224 18 6 3.2413 -0.6943 5.9041 19 6 3.3819 -0.0011 7.1290 20 1 4.0786 -0.3564 7.8737 21 6 2.6180 1.1451 7.3760 22 7 1.5472 1.3836 6.6632 23 14 3.1271 2.3345 8.7234 24 1 4.0356 3.3640 8.1575 25 1 1.9203 2.9936 9.2839 26 1 3.8305 1.5915 9.7997 27 6 2.7729 -0.0226 4.7622 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1263 -0.7996 -1.2056 32 1 1.7516 -0.1584 -2.1369 33 1 1.5917 -2.2725 -3.3576 34 1 2.9667 -2.9139 -2.4268 35 1 2.2490 -1.6318 1.1526 36 1 2.8578 -2.6122 2.5735 37 1 3.6868 -3.7806 4.5697 38 1 3.9319 -2.5815 6.6965 39 1 1.0174 2.1780 6.8346 40 1 2.5184 1.0256 4.8145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067278032.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:17 Heat of formation + Delta-G solvation = -244.204863 kcal Electronic energy + Delta-G solvation = -27982.914840 eV Core-core repulsion = 23346.345054 eV Total energy + Delta-G solvation = -4636.569786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.06246 -48.62008 -48.55290 -41.04135 -39.46271 -38.72098 -36.29647 -35.58998 -32.92118 -31.41614 -31.18840 -30.36130 -27.41350 -27.17420 -24.65677 -24.22967 -22.84658 -21.98280 -21.21041 -19.59890 -19.58887 -19.56649 -18.75656 -17.97379 -17.67047 -17.08275 -16.89123 -16.47972 -16.34810 -15.82612 -15.52887 -15.44926 -15.35707 -15.07204 -14.99868 -14.85115 -14.73201 -14.71374 -14.43650 -14.26945 -14.23697 -13.51705 -13.41180 -13.24320 -12.92139 -12.80551 -12.79191 -12.53132 -12.30517 -12.19041 -12.03896 -11.87250 -11.49505 -11.07889 -10.90983 -10.71882 -10.13776 -9.46738 -9.38082 -8.66264 -6.37842 0.39292 1.01227 1.36575 1.48353 1.51112 1.51549 2.10718 2.19311 2.24653 2.36960 2.79403 2.89311 3.05768 3.44749 3.70539 3.76885 4.06202 4.08012 4.17781 4.19150 4.34184 4.43602 4.46361 4.57019 4.61791 4.78560 4.88798 5.00725 5.09616 5.19889 5.31482 5.32590 5.51492 5.55452 5.81872 5.87668 5.93872 6.05777 6.29162 6.52485 6.70308 6.88330 6.95042 7.34086 8.30528 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.002590 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.627593 B =10807.700077 C =11692.946862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.139 3.861 3 H 0.094 0.906 4 C 0.066 3.934 5 O -0.392 6.392 6 C 0.020 3.980 7 C 0.455 3.545 8 F -0.189 7.189 9 F -0.178 7.178 10 F -0.189 7.189 11 N -0.708 5.708 12 C 0.562 3.438 13 O -0.587 6.587 14 C -0.140 4.140 15 C -0.198 4.198 16 C -0.096 4.096 17 C -0.218 4.218 18 C 0.067 3.933 19 C -0.497 4.497 20 H 0.084 0.916 21 C 0.029 3.971 22 N -0.825 5.825 23 Si 0.984 3.016 24 H -0.265 1.265 25 H -0.270 1.270 26 H -0.251 1.251 27 C -0.130 4.130 28 H 0.026 0.974 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.412 0.588 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.108 0.892 39 H 0.286 0.714 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.175 -7.173 -21.118 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.112 0.888 4 C -0.009 4.009 5 O -0.312 6.312 6 C -0.057 4.057 7 C 0.401 3.599 8 F -0.171 7.171 9 F -0.159 7.159 10 F -0.171 7.171 11 N -0.361 5.361 12 C 0.352 3.648 13 O -0.468 6.468 14 C -0.143 4.143 15 C -0.217 4.217 16 C -0.114 4.114 17 C -0.238 4.238 18 C 0.065 3.935 19 C -0.527 4.527 20 H 0.102 0.898 21 C -0.186 4.186 22 N -0.451 5.451 23 Si 0.804 3.196 24 H -0.190 1.190 25 H -0.194 1.194 26 H -0.174 1.174 27 C -0.150 4.150 28 H 0.046 0.954 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.249 0.751 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.612 -6.297 -21.005 21.937 hybrid contribution -0.079 0.063 0.777 0.783 sum 0.534 -6.234 -20.228 21.173 Atomic orbital electron populations 1.22040 0.94858 1.02484 1.01917 1.21209 0.95143 0.96914 0.83275 0.88845 1.22960 0.98534 0.82031 0.97423 1.87892 1.70903 1.28066 1.44337 1.23704 1.01671 0.87158 0.93206 1.20630 0.76995 0.89049 0.73228 1.93197 1.31962 1.95821 1.96086 1.93205 1.90353 1.78990 1.53384 1.93209 1.91056 1.83271 1.49556 1.45851 1.67086 1.14551 1.08650 1.18680 0.76210 0.85826 0.84093 1.90666 1.52506 1.17855 1.85781 1.19820 1.05609 0.95670 0.93208 1.20826 1.08803 0.92735 0.99377 1.20905 0.98671 0.99527 0.92318 1.21397 1.10320 0.93760 0.98280 1.17955 0.90446 0.92140 0.93007 1.19867 1.21393 1.09573 1.01829 0.89824 1.26868 0.92831 0.99281 0.99617 1.69901 1.11657 1.25572 1.37920 0.85177 0.78833 0.77757 0.77805 1.19004 1.19436 1.17423 1.21445 1.02739 0.99474 0.91384 0.95441 0.89156 0.91859 0.90040 0.87557 0.85568 0.86079 0.75053 0.85027 0.84591 0.87412 0.90305 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.29 71.98 0.67 -3.17 16 2 C 0.14 3.31 2.98 44.99 0.13 3.44 16 3 H 0.09 2.44 7.58 -2.39 -0.02 2.42 16 4 C 0.07 0.89 5.68 71.98 0.41 1.30 16 5 O -0.39 -6.09 9.08 -148.98 -1.35 -7.44 16 6 C 0.02 0.19 5.90 71.98 0.42 0.61 16 7 C 0.46 6.94 3.32 71.98 0.24 7.18 16 8 F -0.19 -3.63 17.26 44.97 0.78 -2.86 16 9 F -0.18 -2.57 17.32 44.97 0.78 -1.80 16 10 F -0.19 -3.81 17.26 44.97 0.78 -3.03 16 11 N -0.71 -21.99 5.01 -445.36 -2.23 -24.22 16 12 C 0.56 24.50 7.74 86.80 0.67 25.17 16 13 O -0.59 -29.91 16.00 -3.90 -0.06 -29.97 16 14 C -0.14 -6.69 5.87 -20.13 -0.12 -6.80 16 15 C -0.20 -7.96 9.55 22.70 0.22 -7.75 16 16 C -0.10 -3.91 10.01 22.17 0.22 -3.69 16 17 C -0.22 -10.34 9.78 22.77 0.22 -10.12 16 18 C 0.07 3.67 5.57 -21.32 -0.12 3.55 16 19 C -0.50 -27.34 9.05 23.47 0.21 -27.13 16 20 H 0.08 4.34 7.91 -2.91 -0.02 4.32 16 21 C 0.03 1.53 5.14 85.25 0.44 1.96 16 22 N -0.82 -46.45 10.96 21.83 0.24 -46.21 16 23 Si 0.98 39.91 29.60 68.60 2.03 41.94 16 24 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 26 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 27 C -0.13 -7.28 8.24 23.01 0.19 -7.09 16 28 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.59 7.56 -2.39 -0.02 1.57 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.41 11.17 6.40 -92.71 -0.59 10.58 16 36 H 0.13 4.16 6.38 -2.91 -0.02 4.14 16 37 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 38 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 39 H 0.29 14.85 8.30 -92.70 -0.77 14.08 16 40 H 0.10 6.21 5.74 -2.91 -0.02 6.19 16 Total: -1.00 -72.56 356.72 5.26 -67.29 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.50 Total: 28.82 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 3.81 Total: -22.52 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -1.99 Total: -70.43 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -1.42 Total: -37.41 kcal Atomic # 9 Polarization: -10.02 SS G_CDS: 2.33 Total: -7.69 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -72.56 5.26 -67.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067278032.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.912 kcal (2) G-P(sol) polarization free energy of solvation -72.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds