Wall clock time and date at job start Tue Mar 31 2020 16:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46795 * 2 1 4 4 C 1.50702 * 109.47199 * 180.02562 * 3 2 1 5 5 C 1.35845 * 120.90229 * 265.00201 * 4 3 2 6 6 C 1.41008 * 119.82702 * 179.97438 * 5 4 3 7 7 O 1.21793 * 119.15634 * 179.97438 * 6 5 4 8 8 O 1.34225 * 121.68316 * 0.02562 * 6 5 4 9 9 C 1.35021 * 121.46806 * 359.97127 * 8 6 5 10 10 C 1.38678 * 120.73958 * 180.02562 * 9 8 6 11 11 C 1.38512 * 119.79145 * 179.97438 * 10 9 8 12 12 O 1.35743 * 119.73005 * 179.97438 * 11 10 9 13 13 C 1.42907 * 117.00062 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47028 * 179.97438 * 13 12 11 15 15 O 1.21288 * 119.99969 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99609 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99869 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99864 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00147 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99727 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99964 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47291 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47216 * 119.99813 * 21 19 17 24 24 H 1.48509 * 109.46802 * 239.99633 * 21 19 17 25 25 C 1.39368 * 120.54260 * 359.97438 * 11 10 9 26 26 C 1.36468 * 120.42872 * 359.75944 * 25 11 10 27 27 C 1.39969 * 119.79245 * 0.51161 * 26 25 11 28 28 H 1.08994 * 109.47410 * 60.00270 * 1 2 3 29 29 H 1.08996 * 109.46617 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47146 * 299.99713 * 1 2 3 31 31 H 1.09001 * 109.47146 * 240.00287 * 2 1 3 32 32 H 1.08994 * 109.47410 * 119.99730 * 2 1 3 33 33 H 1.08996 * 109.47611 * 59.99785 * 3 2 1 34 34 H 1.09007 * 109.47166 * 299.99867 * 3 2 1 35 35 H 1.08001 * 120.08813 * 359.96448 * 5 4 3 36 36 H 1.08001 * 120.10471 * 359.97438 * 10 9 8 37 37 H 1.09001 * 109.46632 * 299.99576 * 13 12 11 38 38 H 1.09002 * 109.47419 * 59.99604 * 13 12 11 39 39 H 0.97003 * 120.00162 * 359.97438 * 16 14 13 40 40 H 0.97003 * 119.99984 * 180.02562 * 20 19 17 41 41 H 1.07995 * 119.79071 * 180.02562 * 25 11 10 42 42 H 1.08004 * 120.10318 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2451 1.5440 1.1603 6 6 5.6549 1.5413 1.1334 7 8 6.2686 1.6333 2.1814 8 8 6.3379 1.4409 -0.0178 9 6 5.7051 1.3370 -1.2060 10 6 6.4258 1.2335 -2.3863 11 6 5.7565 1.1273 -3.5943 12 8 6.4632 1.0266 -4.7489 13 6 5.7138 0.9206 -5.9611 14 6 6.6603 0.8194 -7.1294 15 8 7.8585 0.8367 -6.9425 16 7 6.1751 0.7095 -8.3821 17 6 7.0360 0.6179 -9.4451 18 1 8.1031 0.6334 -9.2786 19 6 6.5359 0.5051 -10.7365 20 7 5.2376 0.4858 -10.9389 21 14 7.7090 0.3796 -12.1847 22 1 9.1094 0.4238 -11.6927 23 1 7.4758 -0.9000 -12.9012 24 1 7.4743 1.5159 -13.1117 25 6 4.3634 1.1231 -3.6341 26 6 3.6387 1.2187 -2.4817 27 6 4.2986 1.3324 -1.2526 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.7217 1.6267 2.1014 36 1 7.5056 1.2356 -2.3636 37 1 5.0860 0.0304 -5.9234 38 1 5.0856 1.8036 -6.0783 39 1 5.2167 0.6952 -8.5315 40 1 4.8884 0.4067 -11.8404 41 1 3.8540 1.0394 -4.5827 42 1 2.5593 1.2145 -2.5187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076609496.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:00 Heat of formation + Delta-G solvation = -115.328236 kcal Electronic energy + Delta-G solvation = -26793.154987 eV Core-core repulsion = 22704.030452 eV Total energy + Delta-G solvation = -4089.124536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11277 -40.18322 -38.60155 -37.80647 -37.46598 -36.01298 -34.11536 -33.38459 -31.54792 -31.25547 -29.68080 -28.37072 -27.93095 -24.98686 -24.08074 -23.69025 -22.87450 -21.43667 -20.08313 -19.46510 -18.56189 -18.18960 -17.54569 -17.17900 -16.92610 -16.11182 -16.06812 -15.46778 -15.40926 -15.19865 -14.60321 -14.53574 -14.30310 -14.07173 -13.94210 -13.84240 -13.78796 -13.17120 -13.14909 -12.76038 -12.52306 -12.30934 -12.14315 -11.93955 -11.81257 -11.69135 -11.33040 -11.30257 -11.18415 -11.08544 -10.45358 -10.44258 -10.37703 -10.02382 -9.70259 -9.07808 -8.63238 -8.24019 -8.17170 -6.58885 -4.00672 0.01180 0.79416 1.32425 2.07638 2.61886 3.03746 3.05847 3.19794 3.28220 3.43302 3.62367 3.85627 3.89269 4.06358 4.10128 4.37870 4.50240 4.53917 4.64770 4.73675 4.76486 4.91346 4.97833 5.03632 5.08615 5.18458 5.20040 5.30149 5.37707 5.46452 5.46614 5.50075 5.59414 5.67394 5.80098 5.81229 5.85200 5.95818 6.01063 6.10689 6.99681 7.16763 7.30686 7.40472 7.85096 8.38713 8.99075 9.29266 9.78969 10.58330 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.002213 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.379579 B =12647.487395 C =14034.305337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.094 4.094 4 C 0.052 3.948 5 C -0.273 4.273 6 C 0.513 3.487 7 O -0.473 6.473 8 O -0.270 6.270 9 C 0.191 3.809 10 C -0.179 4.179 11 C 0.202 3.798 12 O -0.271 6.271 13 C 0.047 3.953 14 C 0.437 3.563 15 O -0.572 6.572 16 N -0.551 5.551 17 C -0.302 4.302 18 H 0.107 0.893 19 C 0.026 3.974 20 N -0.897 5.897 21 Si 0.933 3.067 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.229 4.229 26 C -0.012 4.012 27 C -0.203 4.203 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.394 0.606 40 H 0.274 0.726 41 H 0.145 0.855 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.881 0.836 18.457 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.131 4.131 4 C 0.051 3.949 5 C -0.293 4.293 6 C 0.363 3.637 7 O -0.362 6.362 8 O -0.182 6.182 9 C 0.146 3.854 10 C -0.198 4.198 11 C 0.153 3.847 12 O -0.180 6.180 13 C -0.031 4.031 14 C 0.222 3.778 15 O -0.456 6.456 16 N -0.189 5.189 17 C -0.431 4.431 18 H 0.125 0.875 19 C -0.177 4.177 20 N -0.538 5.538 21 Si 0.760 3.240 22 H -0.190 1.190 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.248 4.248 26 C -0.030 4.030 27 C -0.204 4.204 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.228 0.772 40 H 0.084 0.916 41 H 0.162 0.838 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.455 0.872 18.868 22.625 hybrid contribution -0.476 -0.058 -0.911 1.029 sum -12.931 0.814 17.957 22.143 Atomic orbital electron populations 1.21780 0.94911 1.02211 1.02116 1.21524 0.96334 0.94781 1.03213 1.20875 0.88834 0.98849 1.04498 1.21489 0.96356 0.86089 0.91006 1.22273 0.92804 1.13883 1.00299 1.19161 0.88181 0.75277 0.81052 1.90971 1.72114 1.47203 1.25892 1.83546 1.43445 1.77008 1.14164 1.18490 0.89273 0.94571 0.83075 1.19483 1.01772 1.11762 0.86828 1.18936 0.89908 0.89402 0.86482 1.86220 1.34555 1.85141 1.12124 1.22696 0.94920 1.02590 0.82933 1.19223 0.88852 0.86295 0.83469 1.90593 1.15391 1.55191 1.84399 1.41694 1.09856 1.63359 1.03973 1.19783 0.91804 1.47598 0.83913 0.87525 1.25307 0.96587 0.96791 0.99006 1.69607 1.11469 1.49500 1.23219 0.85742 0.80231 0.77878 0.80198 1.19037 1.20565 1.20569 1.21187 0.92800 1.10253 1.00510 1.20658 1.00094 0.92513 0.89757 1.18831 0.91496 1.15480 0.94548 0.92369 0.92259 0.92513 0.91175 0.91338 0.89466 0.89421 0.82341 0.82807 0.89775 0.89771 0.77228 0.91632 0.83761 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.25 16 2 C -0.12 -0.60 5.92 -26.73 -0.16 -0.75 16 3 C -0.09 -0.48 4.85 -27.88 -0.14 -0.61 16 4 C 0.05 0.42 5.33 -102.18 -0.54 -0.12 16 5 C -0.27 -2.64 9.60 -39.39 -0.38 -3.02 16 6 C 0.51 6.87 7.89 31.78 0.25 7.12 16 7 O -0.47 -7.71 17.91 -19.60 -0.35 -8.06 16 8 O -0.27 -3.75 9.82 -20.79 -0.20 -3.95 16 9 C 0.19 2.37 6.76 -38.48 -0.26 2.11 16 10 C -0.18 -2.35 9.94 -39.32 -0.39 -2.74 16 11 C 0.20 2.68 6.69 -39.06 -0.26 2.41 16 12 O -0.27 -4.54 9.65 -38.85 -0.37 -4.91 16 13 C 0.05 0.75 5.21 36.01 0.19 0.93 16 14 C 0.44 9.81 7.86 -10.98 -0.09 9.72 16 15 O -0.57 -15.44 16.08 -14.36 -0.23 -15.67 16 16 N -0.55 -13.02 5.29 -10.96 -0.06 -13.08 16 17 C -0.30 -8.00 9.68 -14.93 -0.14 -8.14 16 18 H 0.11 2.99 7.16 -52.48 -0.38 2.62 16 19 C 0.03 0.65 5.50 -17.47 -0.10 0.55 16 20 N -0.90 -22.97 13.05 55.50 0.72 -22.24 16 21 Si 0.93 20.06 29.55 -169.99 -5.02 15.03 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 25 C -0.23 -2.32 8.96 -39.80 -0.36 -2.68 16 26 C -0.01 -0.10 9.36 -39.57 -0.37 -0.47 16 27 C -0.20 -2.02 5.87 -105.01 -0.62 -2.64 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.35 8.07 -51.93 -0.42 -0.07 16 34 H 0.09 0.36 6.89 -51.93 -0.36 0.00 16 35 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.08 1.09 7.64 -51.93 -0.40 0.69 16 38 H 0.08 1.09 7.64 -51.93 -0.40 0.69 16 39 H 0.39 8.60 7.90 -40.82 -0.32 8.28 16 40 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 41 H 0.14 1.20 6.24 -52.49 -0.33 0.87 16 42 H 0.14 0.75 6.65 -52.48 -0.35 0.40 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -32.92 365.31 -8.04 -40.97 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.04 Total: 4.99 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -2.99 Total: 1.42 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.67 Total: -35.32 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.16 Total: -32.60 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.92 -8.04 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076609496.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.361 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds