Wall clock time and date at job start Tue Mar 31 2020 16:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46795 * 2 1 4 4 C 1.50702 * 109.47199 * 180.02562 * 3 2 1 5 5 C 1.35845 * 120.90229 * 265.00201 * 4 3 2 6 6 C 1.41008 * 119.82702 * 179.97438 * 5 4 3 7 7 O 1.21793 * 119.15634 * 179.97438 * 6 5 4 8 8 O 1.34225 * 121.68316 * 0.02562 * 6 5 4 9 9 C 1.35021 * 121.46806 * 359.97127 * 8 6 5 10 10 C 1.38678 * 120.73958 * 180.02562 * 9 8 6 11 11 C 1.38512 * 119.79145 * 179.97438 * 10 9 8 12 12 O 1.35743 * 119.73005 * 179.97438 * 11 10 9 13 13 C 1.42907 * 117.00062 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47028 * 179.97438 * 13 12 11 15 15 O 1.21288 * 119.99969 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99609 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99869 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99864 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00147 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99727 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99964 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47291 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47216 * 119.99813 * 21 19 17 24 24 H 1.48509 * 109.46802 * 239.99633 * 21 19 17 25 25 C 1.39368 * 120.54260 * 359.97438 * 11 10 9 26 26 C 1.36468 * 120.42872 * 359.75944 * 25 11 10 27 27 C 1.39969 * 119.79245 * 0.51161 * 26 25 11 28 28 H 1.08994 * 109.47410 * 60.00270 * 1 2 3 29 29 H 1.08996 * 109.46617 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47146 * 299.99713 * 1 2 3 31 31 H 1.09001 * 109.47146 * 240.00287 * 2 1 3 32 32 H 1.08994 * 109.47410 * 119.99730 * 2 1 3 33 33 H 1.08996 * 109.47611 * 59.99785 * 3 2 1 34 34 H 1.09007 * 109.47166 * 299.99867 * 3 2 1 35 35 H 1.08001 * 120.08813 * 359.96448 * 5 4 3 36 36 H 1.08001 * 120.10471 * 359.97438 * 10 9 8 37 37 H 1.09001 * 109.46632 * 299.99576 * 13 12 11 38 38 H 1.09002 * 109.47419 * 59.99604 * 13 12 11 39 39 H 0.97003 * 120.00162 * 359.97438 * 16 14 13 40 40 H 0.97003 * 119.99984 * 180.02562 * 20 19 17 41 41 H 1.07995 * 119.79071 * 180.02562 * 25 11 10 42 42 H 1.08004 * 120.10318 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2451 1.5440 1.1603 6 6 5.6549 1.5413 1.1334 7 8 6.2686 1.6333 2.1814 8 8 6.3379 1.4409 -0.0178 9 6 5.7051 1.3370 -1.2060 10 6 6.4258 1.2335 -2.3863 11 6 5.7565 1.1273 -3.5943 12 8 6.4632 1.0266 -4.7489 13 6 5.7138 0.9206 -5.9611 14 6 6.6603 0.8194 -7.1294 15 8 7.8585 0.8367 -6.9425 16 7 6.1751 0.7095 -8.3821 17 6 7.0360 0.6179 -9.4451 18 1 8.1031 0.6334 -9.2786 19 6 6.5359 0.5051 -10.7365 20 7 5.2376 0.4858 -10.9389 21 14 7.7090 0.3796 -12.1847 22 1 9.1094 0.4238 -11.6927 23 1 7.4758 -0.9000 -12.9012 24 1 7.4743 1.5159 -13.1117 25 6 4.3634 1.1231 -3.6341 26 6 3.6387 1.2187 -2.4817 27 6 4.2986 1.3324 -1.2526 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.7217 1.6267 2.1014 36 1 7.5056 1.2356 -2.3636 37 1 5.0860 0.0304 -5.9234 38 1 5.0856 1.8036 -6.0783 39 1 5.2167 0.6952 -8.5315 40 1 4.8884 0.4067 -11.8404 41 1 3.8540 1.0394 -4.5827 42 1 2.5593 1.2145 -2.5187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076609496.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:59 Heat of formation + Delta-G solvation = -134.481374 kcal Electronic energy + Delta-G solvation = -26793.985530 eV Core-core repulsion = 22704.030452 eV Total energy + Delta-G solvation = -4089.955078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.06163 -41.31433 -40.02734 -39.14981 -38.29047 -36.85722 -36.03047 -33.94736 -33.41133 -32.21299 -30.69423 -29.54426 -28.55677 -26.66417 -25.19250 -24.49765 -23.54769 -22.04368 -21.47719 -20.67100 -20.01146 -19.37763 -18.60773 -18.38387 -17.95970 -17.44160 -17.28977 -16.86031 -16.21723 -16.17050 -15.88334 -15.69697 -15.27726 -15.18517 -15.07011 -14.74915 -14.48596 -14.44360 -14.31571 -13.76631 -13.56260 -13.31859 -13.19445 -12.95255 -12.74605 -12.58028 -12.46119 -12.35742 -12.28486 -12.12328 -11.97802 -11.58823 -11.50233 -11.35645 -10.81669 -10.48360 -10.09721 -9.98225 -9.16226 -8.52564 -6.01662 -0.81522 -0.09946 0.45551 1.08241 1.34625 1.43421 1.55961 1.71371 1.89987 1.90113 2.33968 2.57575 3.05684 3.13929 3.18148 3.20892 3.38051 3.61559 3.83959 3.97783 4.08484 4.12843 4.16779 4.22009 4.22852 4.30045 4.46533 4.58191 4.61104 4.68493 4.84818 4.90351 5.00619 5.02352 5.07642 5.15794 5.28676 5.35978 5.38294 5.39881 5.53888 5.88661 6.03782 6.15621 6.33821 6.51829 7.05671 7.42826 7.98616 8.64338 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.002213 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.379579 B =12647.487395 C =14034.305337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.091 4.091 4 C 0.076 3.924 5 C -0.284 4.284 6 C 0.505 3.495 7 O -0.519 6.519 8 O -0.293 6.293 9 C 0.172 3.828 10 C -0.198 4.198 11 C 0.184 3.816 12 O -0.308 6.308 13 C 0.060 3.940 14 C 0.431 3.569 15 O -0.628 6.628 16 N -0.556 5.556 17 C -0.337 4.337 18 H 0.078 0.922 19 C -0.004 4.004 20 N -0.911 5.911 21 Si 0.991 3.009 22 H -0.276 1.276 23 H -0.269 1.269 24 H -0.269 1.269 25 C -0.220 4.220 26 C 0.008 3.992 27 C -0.200 4.200 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.180 0.820 36 H 0.136 0.864 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.403 0.597 40 H 0.281 0.719 41 H 0.173 0.827 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.055 0.943 18.003 25.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.128 4.128 4 C 0.075 3.925 5 C -0.302 4.302 6 C 0.358 3.642 7 O -0.412 6.412 8 O -0.205 6.205 9 C 0.127 3.873 10 C -0.218 4.218 11 C 0.137 3.863 12 O -0.220 6.220 13 C -0.017 4.017 14 C 0.218 3.782 15 O -0.515 6.515 16 N -0.194 5.194 17 C -0.466 4.466 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.551 5.551 21 Si 0.815 3.185 22 H -0.201 1.201 23 H -0.194 1.194 24 H -0.194 1.194 25 C -0.238 4.238 26 C -0.010 4.010 27 C -0.201 4.201 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.198 0.802 36 H 0.154 0.846 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.238 0.762 40 H 0.091 0.909 41 H 0.191 0.809 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.687 0.976 18.403 24.861 hybrid contribution 0.797 -0.099 -0.729 1.085 sum -15.890 0.878 17.673 23.783 Atomic orbital electron populations 1.21770 0.94040 1.02277 1.02802 1.21520 0.96979 0.94350 1.02916 1.21043 0.85691 0.99421 1.06610 1.21810 0.98114 0.83216 0.89368 1.22325 0.90601 1.15257 1.02062 1.19793 0.89561 0.74536 0.80278 1.90933 1.73151 1.49897 1.27211 1.83462 1.44964 1.77108 1.14989 1.18658 0.90612 0.95903 0.82131 1.19473 1.01368 1.13112 0.87827 1.19052 0.91335 0.91020 0.84925 1.86145 1.36317 1.86332 1.13182 1.22563 0.92894 1.06048 0.80226 1.20382 0.89237 0.83845 0.84727 1.90558 1.18397 1.57056 1.85492 1.41690 1.09921 1.63630 1.04120 1.19668 0.91216 1.50069 0.85688 0.90431 1.25986 0.98145 0.95835 1.00591 1.69638 1.12228 1.49063 1.24173 0.84898 0.77808 0.78499 0.77326 1.20098 1.19403 1.19410 1.21492 0.91035 1.08846 1.02450 1.21134 1.02069 0.89751 0.88024 1.19168 0.90371 1.14183 0.96335 0.91453 0.92582 0.92095 0.91269 0.92069 0.87725 0.87091 0.80231 0.84623 0.86039 0.86031 0.76161 0.90950 0.80938 0.79481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 71.98 0.71 0.11 16 2 C -0.12 -0.67 5.92 30.59 0.18 -0.49 16 3 C -0.09 -0.47 4.85 29.85 0.14 -0.33 16 4 C 0.08 1.01 5.33 -18.28 -0.10 0.91 16 5 C -0.28 -5.09 9.60 22.39 0.21 -4.87 16 6 C 0.50 13.98 7.89 68.50 0.54 14.52 16 7 O -0.52 -17.92 17.91 18.97 0.34 -17.58 16 8 O -0.29 -8.62 9.82 14.68 0.14 -8.48 16 9 C 0.17 4.29 6.76 22.98 0.16 4.44 16 10 C -0.20 -5.43 9.94 22.44 0.22 -5.21 16 11 C 0.18 4.71 6.69 22.61 0.15 4.86 16 12 O -0.31 -10.28 9.65 -71.64 -0.69 -10.97 16 13 C 0.06 1.79 5.21 71.24 0.37 2.16 16 14 C 0.43 19.50 7.86 87.66 0.69 20.19 16 15 O -0.63 -35.31 16.08 15.98 0.26 -35.05 16 16 N -0.56 -26.34 5.29 -306.98 -1.62 -27.97 16 17 C -0.34 -18.24 9.68 84.04 0.81 -17.43 16 18 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 19 C 0.00 -0.22 5.50 84.93 0.47 0.24 16 20 N -0.91 -45.63 13.05 21.66 0.28 -45.34 16 21 Si 0.99 40.88 29.55 68.60 2.03 42.91 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 25 C -0.22 -3.58 8.96 22.13 0.20 -3.39 16 26 C 0.01 0.09 9.36 22.28 0.21 0.30 16 27 C -0.20 -3.46 5.87 -20.11 -0.12 -3.57 16 28 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.10 0.30 8.07 -2.39 -0.02 0.28 16 34 H 0.11 0.16 6.89 -2.38 -0.02 0.14 16 35 H 0.18 2.38 8.06 -2.91 -0.02 2.35 16 36 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.12 2.69 7.64 -2.39 -0.02 2.67 16 38 H 0.12 2.69 7.64 -2.39 -0.02 2.68 16 39 H 0.40 17.25 7.90 -92.71 -0.73 16.51 16 40 H 0.28 13.10 8.31 -92.71 -0.77 12.33 16 41 H 0.17 1.85 6.24 -2.91 -0.02 1.83 16 42 H 0.19 0.60 6.65 -2.91 -0.02 0.58 16 Total: -1.00 -77.43 365.31 5.94 -71.49 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.34 Total: 18.55 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 4.86 Total: 12.44 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.34 Total: -73.31 kcal Atomic # 8 Polarization: -72.13 SS G_CDS: 0.05 Total: -72.08 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -77.43 5.94 -71.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076609496.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.989 kcal (2) G-P(sol) polarization free energy of solvation -77.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds