Wall clock time and date at job start Tue Mar 31 2020 16:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99829 * 2 1 4 4 C 1.52996 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47244 * 184.99823 * 4 3 2 6 6 N 1.46496 * 109.47592 * 64.99597 * 4 3 2 7 7 S 1.65599 * 120.00146 * 95.00107 * 6 4 3 8 8 O 1.42105 * 104.27655 * 308.92954 * 7 6 4 9 9 O 1.42101 * 104.27764 * 181.07391 * 7 6 4 10 10 C 1.81395 * 104.44748 * 65.00260 * 7 6 4 11 11 C 1.52999 * 109.46986 * 180.02562 * 10 7 6 12 12 C 1.53002 * 109.47213 * 180.02562 * 11 10 7 13 13 C 1.50706 * 109.47044 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00265 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99848 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99731 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99899 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47633 * 59.99291 * 17 15 13 19 19 H 1.48504 * 109.47025 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47285 * 299.99307 * 17 15 13 21 21 C 1.50701 * 109.46752 * 304.99578 * 4 3 2 22 22 C 1.34521 * 125.78967 * 260.00237 * 21 4 3 23 23 C 1.41382 * 106.84061 * 180.02562 * 22 21 4 24 24 C 1.34511 * 106.83799 * 0.02562 * 23 22 21 25 25 C 1.50704 * 125.78695 * 180.02562 * 24 23 22 26 26 O 1.34299 * 125.79074 * 79.69493 * 21 4 3 27 27 H 1.08996 * 109.47308 * 60.00528 * 1 2 3 28 28 H 1.09004 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47522 * 299.99956 * 1 2 3 30 30 H 1.08998 * 109.47569 * 59.99486 * 3 2 1 31 31 H 1.09009 * 109.46630 * 300.00091 * 3 2 1 32 32 H 0.97001 * 119.99851 * 275.00634 * 6 4 3 33 33 H 1.09003 * 109.47393 * 299.99669 * 10 7 6 34 34 H 1.08994 * 109.47678 * 60.00285 * 10 7 6 35 35 H 1.09004 * 109.47080 * 299.99725 * 11 10 7 36 36 H 1.09005 * 109.47285 * 59.99790 * 11 10 7 37 37 H 1.09003 * 109.47218 * 299.99466 * 12 11 10 38 38 H 1.08995 * 109.47220 * 59.99596 * 12 11 10 39 39 H 0.97002 * 119.99124 * 180.02562 * 16 15 13 40 40 H 1.08000 * 126.57724 * 359.96366 * 22 21 4 41 41 H 1.08001 * 126.57685 * 180.02562 * 23 22 21 42 42 H 1.08995 * 109.47510 * 89.99673 * 25 24 23 43 43 H 1.09001 * 109.47054 * 209.99693 * 25 24 23 44 44 H 1.09008 * 109.46925 * 329.99546 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1766 0.0889 6 7 3.9757 0.5645 -1.2526 7 16 4.4454 1.5129 -2.5262 8 8 3.3778 2.4368 -2.6876 9 8 4.7729 0.5855 -3.5518 10 6 5.9362 2.3599 -1.9341 11 6 6.4721 3.2781 -3.0344 12 6 7.7299 3.9921 -2.5352 13 6 8.2573 4.8970 -3.6188 14 1 7.7467 4.9566 -4.5686 15 6 9.3923 5.6480 -3.3979 16 7 10.0143 5.5750 -2.2414 17 14 10.0464 6.7691 -4.7412 18 1 9.0129 7.7758 -5.0928 19 1 11.2672 7.4622 -4.2567 20 1 10.3791 5.9611 -5.9420 21 6 3.9722 0.3325 1.1630 22 6 4.4509 0.7872 2.3351 23 6 4.7336 -0.3475 3.1298 24 6 4.4114 -1.4275 2.3956 25 6 4.5438 -2.8631 2.8347 26 8 3.9443 -1.0094 1.2079 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8465 0.8899 31 1 1.6885 1.8464 -0.8901 32 1 3.9920 -0.4018 -1.3356 33 1 5.6913 2.9535 -1.0533 34 1 6.6950 1.6216 -1.6752 35 1 6.7169 2.6849 -3.9154 36 1 5.7131 4.0166 -3.2930 37 1 7.4855 4.5853 -1.6540 38 1 8.4886 3.2534 -2.2769 39 1 10.8126 6.1037 -2.0860 40 1 4.5929 1.8206 2.6149 41 1 5.1319 -0.3470 4.1337 42 1 3.6208 -3.1815 3.3191 43 1 4.7340 -3.4928 1.9656 44 1 5.3726 -2.9532 3.5370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080789149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:09 Heat of formation + Delta-G solvation = -143.651126 kcal Electronic energy + Delta-G solvation = -26687.979527 eV Core-core repulsion = 22733.070770 eV Total energy + Delta-G solvation = -3954.908757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.50317 -39.22891 -38.20895 -37.10759 -36.59344 -36.46698 -34.16815 -34.05193 -32.71299 -30.35619 -29.66758 -27.72938 -26.52241 -25.63417 -23.62110 -22.75473 -22.36821 -21.05213 -20.36601 -19.01208 -18.62509 -18.28240 -17.36858 -17.32912 -17.12924 -16.89302 -16.50628 -16.47648 -16.18664 -15.84729 -15.50078 -14.50897 -14.47108 -14.17562 -14.10398 -13.84758 -13.77380 -13.65986 -13.63861 -13.51555 -13.32121 -13.23644 -13.16067 -12.98057 -12.77033 -12.72740 -12.65385 -12.50850 -12.24886 -12.14197 -11.73747 -11.39240 -11.20160 -10.78640 -10.65591 -10.56182 -10.54715 -9.19630 -8.21873 -6.32745 -0.82569 0.75892 1.40903 1.43210 1.51113 1.56827 1.78490 1.98197 2.40410 2.68663 2.78498 3.11773 3.15562 3.48816 3.70071 3.81197 3.86396 4.00878 4.10207 4.19332 4.23085 4.39603 4.50036 4.52366 4.57281 4.60848 4.65784 4.71653 4.74290 4.84543 4.90478 4.94658 4.96455 5.07182 5.11701 5.29929 5.46437 5.64144 5.67862 5.80407 5.88068 6.17670 6.20470 6.31470 6.82895 7.36535 8.89384 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014679 B = 0.002924 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.975933 B = 9572.728300 C =10684.642558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.037 3.963 4 C 0.235 3.765 5 H 0.148 0.852 6 N -1.103 6.103 7 S 2.628 3.372 8 O -0.977 6.977 9 O -0.990 6.990 10 C -0.610 4.610 11 C -0.106 4.106 12 C 0.032 3.968 13 C -0.553 4.553 14 H 0.061 0.939 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.961 3.039 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.025 4.025 22 C -0.205 4.205 23 C -0.226 4.226 24 C -0.024 4.024 25 C -0.073 4.073 26 O -0.174 6.174 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.426 0.574 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.007 0.993 38 H 0.001 0.999 39 H 0.265 0.735 40 H 0.168 0.832 41 H 0.165 0.835 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.927 -14.298 13.303 25.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.041 4.041 4 C 0.127 3.873 5 H 0.165 0.835 6 N -0.862 5.862 7 S 2.724 3.276 8 O -0.967 6.967 9 O -0.980 6.980 10 C -0.741 4.741 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.591 4.591 14 H 0.079 0.921 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.194 1.194 21 C -0.077 4.077 22 C -0.225 4.225 23 C -0.245 4.245 24 C -0.075 4.075 25 C -0.129 4.129 26 O -0.070 6.070 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.262 0.738 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.025 0.975 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.185 0.815 41 H 0.183 0.817 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.259 -14.361 12.329 25.615 hybrid contribution 0.936 0.712 0.057 1.178 sum -16.322 -13.649 12.386 24.620 Atomic orbital electron populations 1.22902 0.79888 1.03596 1.00712 1.87895 1.20975 1.27400 1.95596 1.23275 0.92025 0.85905 1.02889 1.19687 0.93843 0.95177 0.78545 0.83480 1.55453 1.81919 1.20613 1.28177 1.04414 0.76292 0.73821 0.73111 1.93545 1.52167 1.65852 1.85108 1.93542 1.86107 1.62452 1.55915 1.30524 1.20041 1.12767 1.10777 1.21324 0.99825 0.97538 0.95835 1.18956 0.91770 0.94263 0.95692 1.21726 1.11021 1.25336 1.01057 0.92113 1.25918 0.96981 0.98570 0.98011 1.70065 1.19895 1.42204 1.24775 0.85555 0.77828 0.78890 0.79141 1.19123 1.20678 1.19356 1.22136 1.06351 0.81166 0.98039 1.21928 1.05148 1.01599 0.93777 1.21855 1.08677 0.91273 1.02661 1.23192 1.01425 0.98875 0.83967 1.20454 1.04596 0.85530 1.02318 1.83947 1.65425 1.22181 1.35483 0.93745 0.88779 0.92901 0.89777 0.91060 0.73807 0.83035 0.83850 0.91747 0.90962 0.97506 0.98103 0.92644 0.81486 0.81719 0.88967 0.90426 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.79 10.01 -148.98 -1.49 -10.28 16 3 C 0.04 0.74 5.76 71.98 0.41 1.15 16 4 C 0.23 4.75 2.93 44.25 0.13 4.88 16 5 H 0.15 2.21 7.14 -2.39 -0.02 2.19 16 6 N -1.10 -25.38 5.30 -172.53 -0.91 -26.29 16 7 S 2.63 74.68 5.38 -56.49 -0.30 74.38 16 8 O -0.98 -31.43 17.05 -127.65 -2.18 -33.60 16 9 O -0.99 -35.00 18.08 -127.65 -2.31 -37.31 16 10 C -0.61 -17.80 5.96 71.98 0.43 -17.37 16 11 C -0.11 -4.21 5.16 30.59 0.16 -4.05 16 12 C 0.03 1.60 4.97 29.85 0.15 1.75 16 13 C -0.55 -31.22 9.11 25.60 0.23 -30.99 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.00 0.20 5.46 84.65 0.46 0.66 16 16 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 17 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 C -0.03 -0.55 5.70 24.83 0.14 -0.40 16 22 C -0.20 -4.01 10.80 22.19 0.24 -3.77 16 23 C -0.23 -4.21 10.81 22.19 0.24 -3.97 16 24 C -0.02 -0.47 7.32 24.83 0.18 -0.29 16 25 C -0.07 -0.84 10.42 71.24 0.74 -0.10 16 26 O -0.17 -4.09 10.25 -2.44 -0.03 -4.11 16 27 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.52 7.36 -2.38 -0.02 1.50 16 32 H 0.43 9.61 8.57 -96.74 -0.83 8.78 16 33 H 0.15 3.60 7.44 -2.39 -0.02 3.59 16 34 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 35 H 0.06 2.54 8.14 -2.39 -0.02 2.53 16 36 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 37 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 41 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -77.37 386.01 0.03 -77.35 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.17 Total: 19.92 kcal Atomic # 6 Polarization: -55.61 SS G_CDS: 4.77 Total: -50.84 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -0.63 Total: -81.46 kcal Atomic # 8 Polarization: -79.30 SS G_CDS: -6.00 Total: -85.30 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 74.68 SS G_CDS: -0.30 Total: 74.38 kcal Total: -77.37 0.03 -77.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080789149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.306 kcal (2) G-P(sol) polarization free energy of solvation -77.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds