Wall clock time and date at job start Tue Mar 31 2020 15:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00601 * 2 1 4 4 O 1.20830 * 119.99355 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00674 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47526 * 180.02562 * 5 3 2 7 7 C 1.36931 * 120.00105 * 264.34308 * 6 5 3 8 8 H 1.08002 * 120.00186 * 143.00095 * 7 6 5 9 9 C 1.38817 * 119.99989 * 322.99853 * 7 6 5 10 10 N 1.31622 * 119.99858 * 340.50660 * 9 7 6 11 11 Si 1.86799 * 120.00047 * 160.51425 * 9 7 6 12 12 H 1.48496 * 109.47598 * 59.99647 * 11 9 7 13 13 H 1.48505 * 109.46968 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46813 * 299.99497 * 11 9 7 15 15 C 1.46498 * 119.99789 * 84.34136 * 6 5 3 16 16 C 1.50694 * 109.47335 * 84.97994 * 15 6 5 17 17 C 1.35715 * 120.91262 * 264.67761 * 16 15 6 18 18 C 1.41188 * 119.79641 * 179.82003 * 17 16 15 19 19 O 1.21779 * 119.15376 * 180.23285 * 18 17 16 20 20 O 1.34190 * 121.68192 * 0.44974 * 18 17 16 21 21 C 1.35009 * 121.47129 * 359.78555 * 20 18 17 22 22 C 1.38914 * 120.78182 * 179.97438 * 21 20 18 23 23 C 1.37907 * 119.82079 * 180.02562 * 22 21 20 24 24 C 1.50698 * 119.66698 * 179.97438 * 23 22 21 25 25 C 1.38760 * 120.66890 * 359.97438 * 23 22 21 26 26 C 1.36661 * 120.49892 * 0.02562 * 25 23 22 27 27 C 1.39835 * 119.71472 * 359.96308 * 26 25 23 28 28 H 1.09002 * 109.46850 * 299.99865 * 1 2 3 29 29 H 1.08996 * 109.46865 * 59.99698 * 1 2 3 30 30 H 1.09000 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46751 * 60.00203 * 5 3 2 32 32 H 1.09002 * 109.47515 * 300.00485 * 5 3 2 33 33 H 0.97001 * 119.99713 * 179.97438 * 10 9 7 34 34 H 1.08996 * 109.46867 * 204.98278 * 15 6 5 35 35 H 1.09001 * 109.46871 * 324.97940 * 15 6 5 36 36 H 1.07992 * 120.09703 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.09113 * 0.03870 * 22 21 20 38 38 H 1.08998 * 109.47106 * 90.00438 * 24 23 22 39 39 H 1.09007 * 109.47314 * 209.99414 * 24 23 22 40 40 H 1.09003 * 109.47415 * 329.99847 * 24 23 22 41 41 H 1.08001 * 119.74965 * 180.02562 * 25 23 22 42 42 H 1.08000 * 120.13981 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.2885 3.3034 -1.1787 8 1 4.0204 4.3389 -1.3278 9 6 4.9442 2.6047 -2.1832 10 7 5.6053 1.5036 -1.8952 11 14 4.8883 3.2273 -3.9435 12 1 5.4812 4.5873 -4.0067 13 1 5.6618 2.3094 -4.8180 14 1 3.4779 3.2802 -4.4052 15 6 4.0691 3.4172 1.2638 16 6 5.4131 3.1692 1.8986 17 6 5.5724 2.2039 2.8392 18 6 6.8432 1.9890 3.4158 19 8 6.9738 1.1169 4.2556 20 8 7.9096 2.7242 3.0652 21 6 7.8176 3.7027 2.1395 22 6 8.9309 4.4555 1.7877 23 6 8.8143 5.4506 0.8401 24 6 10.0241 6.2655 0.4615 25 6 7.5942 5.7092 0.2317 26 6 6.4861 4.9811 0.5626 27 6 6.5834 3.9674 1.5209 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9558 0.7808 0.8908 33 1 6.0631 1.0152 -2.5972 34 1 3.9496 4.4833 1.0709 35 1 3.2813 3.0793 1.9371 36 1 4.7305 1.5997 3.1432 37 1 9.8852 4.2617 2.2548 38 1 10.5407 5.7844 -0.3691 39 1 9.7097 7.2657 0.1633 40 1 10.6969 6.3358 1.3162 41 1 7.5199 6.4918 -0.5088 42 1 5.5395 5.1870 0.0851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080872982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:36 Heat of formation + Delta-G solvation = -108.113034 kcal Electronic energy + Delta-G solvation = -28883.312173 eV Core-core repulsion = 24794.500512 eV Total energy + Delta-G solvation = -4088.811661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.83394 -41.17808 -40.01389 -38.51194 -38.14677 -37.05267 -35.69190 -33.37007 -32.55161 -31.58669 -30.33336 -28.57156 -27.78683 -27.67001 -25.10885 -24.66974 -23.46258 -22.56263 -21.60994 -19.77382 -19.29952 -18.76764 -18.49121 -18.24380 -17.77920 -17.43491 -17.11251 -16.61462 -16.23819 -15.77381 -15.70459 -15.51865 -15.36938 -14.97034 -14.75323 -14.59205 -14.22863 -14.10956 -13.90031 -13.74204 -13.36177 -12.98659 -12.92841 -12.88930 -12.75920 -12.67523 -12.52227 -12.38056 -12.26739 -12.16858 -11.99514 -11.64739 -11.39058 -11.27175 -11.07020 -10.65937 -9.68206 -9.20734 -8.86379 -8.02827 -5.60447 -0.67102 0.15534 0.65607 1.43402 1.44468 1.47088 1.51979 1.55926 1.83673 2.01285 2.45451 2.79924 3.17406 3.26049 3.45843 3.51732 3.57383 3.95253 4.05692 4.19936 4.24549 4.31826 4.35341 4.37178 4.43367 4.50823 4.59181 4.70570 4.73960 4.80908 4.88681 4.90392 4.97083 5.09052 5.19084 5.21495 5.28050 5.49676 5.55044 5.56350 5.61392 5.80356 6.18538 6.26406 6.44481 6.80703 7.08624 7.54451 8.08113 8.97748 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010333 B = 0.005249 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.225559 B = 5333.409023 C = 7224.453727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.378 6.378 3 C 0.434 3.566 4 O -0.532 6.532 5 C 0.152 3.848 6 N -0.549 5.549 7 C -0.263 4.263 8 H 0.074 0.926 9 C -0.017 4.017 10 N -0.901 5.901 11 Si 0.952 3.048 12 H -0.261 1.261 13 H -0.294 1.294 14 H -0.287 1.287 15 C 0.169 3.831 16 C 0.052 3.948 17 C -0.296 4.296 18 C 0.512 3.488 19 O -0.525 6.525 20 O -0.286 6.286 21 C 0.119 3.881 22 C -0.152 4.152 23 C -0.027 4.027 24 C -0.113 4.113 25 C -0.148 4.148 26 C -0.033 4.033 27 C -0.157 4.157 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.259 0.741 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.156 0.844 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 7.496 2.287 8.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C 0.276 3.724 4 O -0.420 6.420 5 C 0.023 3.977 6 N -0.266 5.266 7 C -0.393 4.393 8 H 0.091 0.909 9 C -0.216 4.216 10 N -0.542 5.542 11 Si 0.780 3.220 12 H -0.186 1.186 13 H -0.220 1.220 14 H -0.213 1.213 15 C 0.044 3.956 16 C 0.047 3.953 17 C -0.317 4.317 18 C 0.366 3.634 19 O -0.418 6.418 20 O -0.198 6.198 21 C 0.075 3.925 22 C -0.171 4.171 23 C -0.027 4.027 24 C -0.169 4.169 25 C -0.166 4.166 26 C -0.051 4.051 27 C -0.157 4.157 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.174 0.826 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.908 7.258 2.627 7.951 hybrid contribution -0.551 -0.491 -0.909 1.171 sum 1.357 6.767 1.718 7.112 Atomic orbital electron populations 1.23417 0.76132 1.05089 1.01884 1.86580 1.24316 1.34265 1.84249 1.26357 0.94386 0.80874 0.70763 1.90517 1.67635 1.37281 1.46611 1.20635 0.83611 0.88302 1.05173 1.43559 1.72548 1.08696 1.01791 1.19254 1.31265 0.97683 0.91060 0.90861 1.25836 0.95290 0.98143 1.02378 1.70012 1.31727 1.19194 1.33255 0.85578 0.77335 0.78618 0.80479 1.18615 1.22035 1.21339 1.20354 0.89149 0.98716 0.87345 1.22842 0.97860 0.88747 0.85871 1.22123 0.97199 1.06542 1.05821 1.19432 0.83391 0.79415 0.81207 1.90864 1.85285 1.31442 1.34242 1.83392 1.42014 1.42553 1.51865 1.19504 0.95395 0.88290 0.89311 1.20598 0.96944 0.97522 1.02005 1.20281 0.96735 0.93564 0.92148 1.20951 0.93530 0.99357 1.03085 1.21151 0.91728 1.02013 1.01717 1.21196 1.00951 0.91133 0.91793 1.19168 0.92197 1.01632 1.02747 0.92171 0.92967 0.85330 0.86623 0.90081 0.93158 0.89489 0.91112 0.82245 0.82744 0.89739 0.89111 0.89667 0.82618 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.38 -13.52 10.56 -51.38 -0.54 -14.07 16 3 C 0.43 17.89 8.02 71.23 0.57 18.46 16 4 O -0.53 -23.79 16.15 21.95 0.35 -23.43 16 5 C 0.15 6.57 5.83 85.63 0.50 7.07 16 6 N -0.55 -23.84 1.92 -710.71 -1.36 -25.20 16 7 C -0.26 -12.21 8.05 84.04 0.68 -11.53 16 8 H 0.07 3.31 7.61 -2.91 -0.02 3.29 16 9 C -0.02 -0.80 4.96 84.86 0.42 -0.38 16 10 N -0.90 -46.11 11.39 21.65 0.25 -45.86 16 11 Si 0.95 39.58 29.60 68.60 2.03 41.61 16 12 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 13 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 15 C 0.17 6.27 5.36 85.63 0.46 6.73 16 16 C 0.05 1.94 5.66 -18.26 -0.10 1.84 16 17 C -0.30 -11.29 9.60 22.41 0.22 -11.08 16 18 C 0.51 21.36 7.89 68.54 0.54 21.90 16 19 O -0.52 -24.18 17.91 19.02 0.34 -23.84 16 20 O -0.29 -11.35 9.82 15.15 0.15 -11.20 16 21 C 0.12 4.23 6.76 23.00 0.16 4.38 16 22 C -0.15 -4.28 9.64 22.35 0.22 -4.06 16 23 C -0.03 -0.64 5.88 -19.82 -0.12 -0.76 16 24 C -0.11 -1.66 9.99 71.24 0.71 -0.95 16 25 C -0.15 -3.85 9.61 22.03 0.21 -3.64 16 26 C -0.03 -1.06 9.03 22.29 0.20 -0.85 16 27 C -0.16 -5.68 5.87 -20.14 -0.12 -5.80 16 28 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 29 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 30 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.12 5.63 5.48 -2.39 -0.01 5.62 16 32 H 0.08 3.33 8.11 -2.39 -0.02 3.31 16 33 H 0.26 13.07 8.31 -92.71 -0.77 12.30 16 34 H 0.09 2.99 6.76 -2.39 -0.02 2.97 16 35 H 0.07 2.47 8.03 -2.39 -0.02 2.45 16 36 H 0.16 5.62 8.06 -2.91 -0.02 5.60 16 37 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.02 8.08 -2.38 -0.02 1.00 16 40 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 41 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 42 H 0.14 4.67 5.26 -2.91 -0.02 4.66 16 Total: -1.00 -64.19 363.82 8.01 -56.18 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 1.06 Total: 22.52 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: 5.74 Total: 23.30 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -1.11 Total: -71.06 kcal Atomic # 8 Polarization: -72.84 SS G_CDS: 0.30 Total: -72.54 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -64.19 8.01 -56.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080872982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.934 kcal (2) G-P(sol) polarization free energy of solvation -64.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds