Wall clock time and date at job start Tue Mar 31 2020 16:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30763 * 126.36137 * 2 1 4 4 N 1.28425 * 110.64085 * 179.97438 * 3 2 1 5 5 N 1.28949 * 110.20188 * 359.70546 * 4 3 2 6 6 N 1.35058 * 126.36645 * 179.97438 * 2 1 3 7 7 C 1.40159 * 127.38672 * 0.03139 * 6 2 1 8 8 C 1.35548 * 119.99565 * 292.49641 * 7 6 2 9 9 C 1.46954 * 120.00237 * 351.95109 * 8 7 6 10 10 C 1.39972 * 120.15224 * 331.98115 * 9 8 7 11 11 C 1.37778 * 119.84667 * 179.71846 * 10 9 8 12 12 C 1.38695 * 120.14979 * 0.56011 * 11 10 9 13 13 F 1.35099 * 119.84582 * 179.69388 * 12 11 10 14 14 C 1.38688 * 120.30562 * 359.72029 * 12 11 10 15 15 C 1.37778 * 120.15781 * 359.97438 * 14 12 11 16 16 C 1.46638 * 120.00071 * 112.49125 * 7 6 2 17 17 O 1.21738 * 119.99759 * 172.76968 * 16 7 6 18 18 N 1.34776 * 120.00190 * 352.49864 * 16 7 6 19 19 C 1.46504 * 120.00018 * 354.55711 * 18 16 7 20 20 C 1.36733 * 120.00314 * 174.56048 * 18 16 7 21 21 H 1.07998 * 119.99607 * 9.12303 * 20 18 16 22 22 C 1.39091 * 120.00070 * 189.11842 * 20 18 16 23 23 N 1.31330 * 120.00277 * 32.03811 * 22 20 18 24 24 Si 1.86807 * 119.99963 * 212.03736 * 22 20 18 25 25 H 1.48500 * 109.47136 * 94.99967 * 24 22 20 26 26 H 1.48493 * 109.47336 * 214.99782 * 24 22 20 27 27 H 1.48501 * 109.47171 * 334.99952 * 24 22 20 28 28 H 1.09001 * 109.47611 * 275.09136 * 1 2 3 29 29 H 1.09000 * 109.47019 * 35.09796 * 1 2 3 30 30 H 1.09002 * 109.47185 * 155.08998 * 1 2 3 31 31 H 1.08001 * 119.99674 * 171.95498 * 8 7 6 32 32 H 1.08007 * 120.07576 * 359.97438 * 10 9 8 33 33 H 1.07994 * 119.92490 * 180.27710 * 11 10 9 34 34 H 1.08003 * 119.92220 * 179.97438 * 14 12 11 35 35 H 1.07994 * 120.07823 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47030 * 83.42035 * 19 18 16 37 37 H 1.09001 * 109.47377 * 203.42412 * 19 18 16 38 38 H 1.09003 * 109.46989 * 323.42812 * 19 18 16 39 39 H 0.97000 * 120.00258 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2823 1.0530 0.0000 4 7 3.5185 0.7051 0.0005 5 7 3.6192 -0.5805 0.0071 6 7 2.3078 -1.0875 0.0005 7 6 1.9157 -2.4332 0.0005 8 6 1.2944 -2.9579 1.0849 9 6 1.1892 -2.1732 2.3229 10 6 2.1549 -1.2067 2.6268 11 6 2.0470 -0.4705 3.7864 12 6 0.9910 -0.6935 4.6574 13 9 0.8946 0.0276 5.7958 14 6 0.0338 -1.6537 4.3654 15 6 0.1259 -2.3927 3.2062 16 6 2.1775 -3.2731 -1.1726 17 8 1.9581 -4.4697 -1.1256 18 7 2.6558 -2.7197 -2.3046 19 6 2.8016 -1.2653 -2.4040 20 6 3.0048 -3.5155 -3.3603 21 1 2.7623 -4.5678 -3.3465 22 6 3.6720 -2.9697 -4.4519 23 7 4.4992 -1.9641 -4.2803 24 14 3.3917 -3.6670 -6.1621 25 1 2.3452 -2.8732 -6.8549 26 1 4.6567 -3.6014 -6.9369 27 1 2.9501 -5.0807 -6.0539 28 1 -0.3634 0.0912 1.0236 29 1 -0.3633 0.8408 -0.5909 30 1 -0.3634 -0.9321 -0.4329 31 1 0.8767 -3.9528 1.0390 32 1 2.9805 -1.0354 1.9518 33 1 2.7890 0.2787 4.0200 34 1 -0.7858 -1.8225 5.0482 35 1 -0.6204 -3.1398 2.9799 36 1 3.7463 -0.9632 -1.9520 37 1 2.7898 -0.9698 -3.4532 38 1 1.9772 -0.7809 -1.8808 39 1 4.9642 -1.5833 -5.0416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101515383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:58 Heat of formation + Delta-G solvation = 122.671124 kcal Electronic energy + Delta-G solvation = -28939.973647 eV Core-core repulsion = 24802.294736 eV Total energy + Delta-G solvation = -4137.678912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.119 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.02434 -44.58861 -40.82379 -40.07798 -37.24979 -36.94211 -34.34586 -34.02864 -33.31689 -32.29284 -30.66772 -29.47960 -28.62458 -27.07081 -25.56021 -24.48137 -24.18376 -23.02368 -22.41849 -20.79961 -19.44989 -18.96572 -18.84734 -17.89990 -17.31587 -17.12480 -16.70302 -16.57499 -16.26411 -16.12260 -16.00200 -15.64805 -15.07348 -14.94265 -14.79314 -14.64859 -14.34066 -14.20176 -13.87887 -13.72867 -13.69465 -13.55979 -13.45951 -13.15446 -13.03870 -12.82266 -12.47768 -12.23806 -12.17665 -12.07832 -11.89796 -11.31360 -11.12779 -10.87197 -10.50505 -10.25003 -10.01965 -9.42070 -8.66703 -6.00640 -0.90859 -0.10827 0.12344 0.53955 0.79572 1.17934 1.32197 1.37749 1.51634 2.04064 2.15378 2.48238 2.70551 2.87391 2.98544 3.10356 3.36480 3.57040 3.58682 3.75251 3.81907 3.99241 4.07323 4.12341 4.27506 4.30434 4.48000 4.52491 4.58159 4.63607 4.65136 4.75884 4.85348 4.93006 4.97093 5.00897 5.08959 5.28903 5.30907 5.44933 5.72064 5.84296 6.20213 6.90732 7.17298 7.35622 7.75268 8.37358 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.021792 B = 0.003834 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.586547 B = 7300.754223 C = 7986.184691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.263 3.737 3 N -0.347 5.347 4 N -0.061 5.061 5 N -0.100 5.100 6 N -0.318 5.318 7 C 0.035 3.965 8 C 0.018 3.982 9 C -0.099 4.099 10 C -0.096 4.096 11 C -0.161 4.161 12 C 0.109 3.891 13 F -0.141 7.141 14 C -0.141 4.141 15 C -0.037 4.037 16 C 0.453 3.547 17 O -0.617 6.617 18 N -0.422 5.422 19 C 0.101 3.899 20 C -0.359 4.359 21 H 0.094 0.906 22 C 0.008 3.992 23 N -0.862 5.862 24 Si 0.990 3.010 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.264 1.264 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.184 0.816 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.693 3.701 13.761 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.012 4.012 3 N -0.199 5.199 4 N -0.056 5.056 5 N -0.084 5.084 6 N -0.113 5.113 7 C -0.058 4.058 8 C -0.006 4.006 9 C -0.099 4.099 10 C -0.115 4.115 11 C -0.180 4.180 12 C 0.090 3.910 13 F -0.119 7.119 14 C -0.159 4.159 15 C -0.055 4.055 16 C 0.244 3.756 17 O -0.507 6.507 18 N -0.136 5.136 19 C -0.043 4.043 20 C -0.486 4.486 21 H 0.112 0.888 22 C -0.199 4.199 23 N -0.496 5.496 24 Si 0.811 3.189 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.188 1.188 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.117 0.883 31 H 0.201 0.799 32 H 0.123 0.877 33 H 0.149 0.851 34 H 0.193 0.807 35 H 0.200 0.800 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.329 4.009 13.622 18.805 hybrid contribution 0.524 -0.449 -0.890 1.127 sum -11.804 3.560 12.732 17.723 Atomic orbital electron populations 1.20870 0.79139 1.06995 1.07149 1.26491 0.99598 0.81180 0.93897 1.74358 0.96093 1.25492 1.23941 1.77983 1.12344 1.04228 1.11027 1.82689 0.99509 1.04958 1.21262 1.48931 1.04885 1.06926 1.50516 1.19837 1.07535 0.80176 0.98265 1.22804 0.90728 0.99473 0.87553 1.18990 0.97751 0.97758 0.95422 1.21576 0.98630 0.94689 0.96570 1.21047 0.99498 1.02403 0.95011 1.18078 0.96601 0.93246 0.83082 1.91510 1.95944 1.76430 1.48024 1.21443 0.99720 0.95473 0.99294 1.21583 0.95715 0.97727 0.90486 1.17733 0.87891 0.87349 0.82601 1.90644 1.61569 1.15235 1.83219 1.43798 1.51298 1.06338 1.12123 1.22184 0.98920 0.80616 1.02572 1.19813 1.38319 0.94994 0.95491 0.88811 1.26252 0.92645 0.96957 1.04014 1.70243 1.19876 1.25861 1.33644 0.84997 0.78437 0.79300 0.76151 1.18753 1.19880 1.18783 0.85781 0.85775 0.88312 0.79853 0.87690 0.85101 0.80679 0.79997 0.93004 0.91920 0.93256 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.25 71.24 0.73 -0.77 16 2 C 0.26 7.86 4.41 138.05 0.61 8.47 16 3 N -0.35 -11.98 12.16 -50.29 -0.61 -12.59 16 4 N -0.06 -2.44 13.37 37.02 0.49 -1.95 16 5 N -0.10 -4.14 9.27 37.02 0.34 -3.80 16 6 N -0.32 -11.26 0.07 -175.21 -0.01 -11.27 16 7 C 0.04 1.28 5.38 39.38 0.21 1.49 16 8 C 0.02 0.49 9.37 23.93 0.22 0.72 16 9 C -0.10 -2.12 5.40 -20.15 -0.11 -2.23 16 10 C -0.10 -2.51 7.71 22.58 0.17 -2.34 16 11 C -0.16 -3.71 10.01 22.27 0.22 -3.49 16 12 C 0.11 2.05 7.31 22.49 0.16 2.22 16 13 F -0.14 -2.81 17.26 44.97 0.78 -2.03 16 14 C -0.14 -1.80 10.01 22.27 0.22 -1.58 16 15 C -0.04 -0.49 9.79 22.58 0.22 -0.27 16 16 C 0.45 21.80 7.55 86.44 0.65 22.45 16 17 O -0.62 -32.54 15.90 -4.47 -0.07 -32.61 16 18 N -0.42 -22.11 3.02 -663.52 -2.00 -24.11 16 19 C 0.10 4.91 7.36 127.77 0.94 5.85 16 20 C -0.36 -20.13 9.36 84.13 0.79 -19.35 16 21 H 0.09 5.52 7.35 -2.91 -0.02 5.50 16 22 C 0.01 0.42 4.67 84.97 0.40 0.81 16 23 N -0.86 -46.36 11.20 21.69 0.24 -46.12 16 24 Si 0.99 40.62 29.66 68.60 2.03 42.65 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 26 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 27 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 28 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 1.70 7.81 -2.39 -0.02 1.69 16 31 H 0.18 4.35 7.61 -2.91 -0.02 4.33 16 32 H 0.11 3.48 4.63 -2.91 -0.01 3.47 16 33 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.05 2.72 5.80 -2.39 -0.01 2.70 16 37 H 0.06 3.22 6.11 -2.39 -0.01 3.21 16 38 H 0.05 2.08 4.21 -2.39 -0.01 2.07 16 39 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -72.59 334.06 7.77 -64.82 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 1.13 Total: 15.01 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 5.45 Total: 12.00 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -1.54 Total: -99.84 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.07 Total: -32.61 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -72.59 7.77 -64.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.486 kcal (2) G-P(sol) polarization free energy of solvation -72.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds