Wall clock time and date at job start Tue Mar 31 2020 16:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34475 * 126.17108 * 2 1 4 4 C 1.30254 * 108.70205 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.61666 * 179.97438 * 4 3 2 6 6 O 1.45193 * 109.47092 * 89.99775 * 5 4 3 7 7 C 1.34230 * 116.99880 * 179.97438 * 6 5 4 8 8 O 1.20829 * 119.99785 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00255 * 179.97438 * 7 6 5 10 10 C 1.50698 * 109.47298 * 179.97438 * 9 7 6 11 11 C 1.38303 * 119.93281 * 269.72950 * 10 9 7 12 12 C 1.38103 * 120.06823 * 179.72898 * 11 10 9 13 13 C 1.38873 * 119.92834 * 0.56220 * 12 11 10 14 14 O 1.35759 * 120.06829 * 179.68351 * 13 12 11 15 15 C 1.34825 * 117.00091 * 174.48945 * 14 13 12 16 16 H 1.08007 * 120.00013 * 5.05788 * 15 14 13 17 17 C 1.38652 * 120.00246 * 185.06230 * 15 14 13 18 18 N 1.31560 * 119.99804 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00538 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46711 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47247 * 119.99625 * 19 17 15 22 22 H 1.48493 * 109.47406 * 239.99952 * 19 17 15 23 23 C 1.38877 * 119.86423 * 359.71110 * 13 12 11 24 24 C 1.38101 * 119.93185 * 359.97438 * 23 13 12 25 25 O 1.33965 * 108.76343 * 359.72935 * 4 3 2 26 26 C 1.34341 * 126.16203 * 179.97438 * 2 1 3 27 27 C 1.50697 * 126.44469 * 0.02562 * 26 2 1 28 28 H 1.08991 * 109.47141 * 270.00719 * 1 2 3 29 29 H 1.09001 * 109.46513 * 30.00573 * 1 2 3 30 30 H 1.08997 * 109.46884 * 150.00155 * 1 2 3 31 31 H 1.09004 * 109.46651 * 209.99951 * 5 4 3 32 32 H 1.09001 * 109.46996 * 329.99234 * 5 4 3 33 33 H 1.08995 * 109.47053 * 300.00239 * 9 7 6 34 34 H 1.09000 * 109.47078 * 60.00175 * 9 7 6 35 35 H 1.07999 * 119.96526 * 359.97271 * 11 10 9 36 36 H 1.07994 * 120.03097 * 180.27069 * 12 11 10 37 37 H 0.96993 * 120.00127 * 180.02562 * 18 17 15 38 38 H 1.08007 * 120.03213 * 179.97438 * 23 13 12 39 39 H 1.08003 * 119.96485 * 180.02562 * 24 23 13 40 40 H 1.09005 * 109.46783 * 89.99779 * 27 26 2 41 41 H 1.08989 * 109.47165 * 210.00177 * 27 26 2 42 42 H 1.09003 * 109.47197 * 330.00686 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3007 1.0856 0.0000 4 6 3.5431 0.6946 0.0006 5 6 4.7481 1.5997 0.0002 6 8 5.1347 1.8914 1.3690 7 6 6.1989 2.6904 1.5445 8 8 6.7882 3.1310 0.5861 9 6 6.6589 3.0378 2.9369 10 6 7.8630 3.9405 2.8577 11 6 9.1336 3.3952 2.8288 12 6 10.2388 4.2196 2.7505 13 6 10.0737 5.5979 2.7126 14 8 11.1584 6.4112 2.6422 15 6 10.9255 7.7308 2.4934 16 1 9.9131 8.1066 2.5176 17 6 11.9853 8.6056 2.3091 18 7 13.2184 8.1479 2.2800 19 14 11.6626 10.4338 2.1023 20 1 10.2014 10.6894 2.1721 21 1 12.3490 11.1833 3.1850 22 1 12.1806 10.8820 0.7847 23 6 8.7967 6.1427 2.7475 24 6 7.6952 5.3127 2.8192 25 8 3.5734 -0.6447 0.0069 26 6 2.2997 -1.0846 0.0005 27 6 1.8492 -2.5227 0.0006 28 1 -0.3633 0.0001 1.0276 29 1 -0.3632 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 5.5732 1.1059 -0.5131 32 1 4.5042 2.5291 -0.5145 33 1 5.8557 3.5486 3.4680 34 1 6.9241 2.1250 3.4703 35 1 9.2615 2.3233 2.8635 36 1 11.2305 3.7929 2.7236 37 1 13.9599 8.7598 2.1515 38 1 8.6652 7.2143 2.7185 39 1 6.7019 5.7358 2.8459 40 1 1.7410 -2.8695 -1.0271 41 1 2.5896 -3.1353 0.5148 42 1 0.8911 -2.6033 0.5140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111674048.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:19 Heat of formation + Delta-G solvation = -91.029090 kcal Electronic energy + Delta-G solvation = -26162.435100 eV Core-core repulsion = 22074.364254 eV Total energy + Delta-G solvation = -4088.070846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.52804 -41.69286 -40.69506 -38.56503 -37.56396 -36.35315 -34.45446 -34.34644 -33.06468 -31.80538 -30.65610 -29.91176 -28.33424 -27.09936 -25.56575 -23.66322 -23.28363 -22.83423 -21.79596 -21.60922 -19.86638 -18.92227 -18.88241 -18.21119 -17.82970 -17.67327 -17.05939 -16.42988 -16.32521 -15.95561 -15.59734 -15.41450 -15.31949 -15.07095 -14.61389 -14.40354 -14.25434 -14.19234 -14.10661 -13.90142 -13.61394 -13.59935 -13.20800 -13.03998 -12.99956 -12.89629 -12.54029 -12.35051 -12.28854 -12.13269 -12.10412 -11.98286 -11.67815 -11.62876 -11.19027 -10.81067 -9.78595 -9.66149 -8.96236 -8.48472 -6.16603 0.04842 0.58287 0.60043 1.15908 1.17565 1.34354 1.42735 1.48702 1.52849 1.99947 2.16909 2.75896 2.86809 3.16294 3.49781 3.62024 3.71105 3.75982 3.89381 3.95385 4.02342 4.14989 4.18339 4.27711 4.41981 4.49981 4.56813 4.64385 4.66768 4.76671 4.78414 4.79646 4.92274 5.01275 5.03264 5.08211 5.13540 5.22140 5.29264 5.37218 5.53769 5.70097 5.72294 6.01884 6.19768 6.55333 6.68172 6.96269 7.76539 8.74928 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.029977 B = 0.001786 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.826630 B =15676.346694 C =16130.387412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.042 4.042 3 N -0.478 5.478 4 C 0.165 3.835 5 C 0.168 3.832 6 O -0.356 6.356 7 C 0.469 3.531 8 O -0.527 6.527 9 C -0.046 4.046 10 C -0.160 4.160 11 C -0.051 4.051 12 C -0.206 4.206 13 C 0.117 3.883 14 O -0.231 6.231 15 C -0.414 4.414 16 H 0.102 0.898 17 C -0.024 4.024 18 N -0.920 5.920 19 Si 1.020 2.980 20 H -0.252 1.252 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.245 4.245 24 C -0.055 4.055 25 O -0.204 6.204 26 C -0.036 4.036 27 C -0.069 4.069 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.115 0.885 37 H 0.273 0.727 38 H 0.119 0.881 39 H 0.141 0.859 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.050 -21.005 -2.110 34.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.163 4.163 3 N -0.211 5.211 4 C -0.040 4.040 5 C 0.093 3.907 6 O -0.273 6.273 7 C 0.314 3.686 8 O -0.414 6.414 9 C -0.083 4.083 10 C -0.160 4.160 11 C -0.069 4.069 12 C -0.225 4.225 13 C 0.066 3.934 14 O -0.138 6.138 15 C -0.490 4.490 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.558 5.558 19 Si 0.839 3.161 20 H -0.175 1.175 21 H -0.191 1.191 22 H -0.194 1.194 23 C -0.264 4.264 24 C -0.073 4.073 25 O -0.091 6.091 26 C -0.089 4.089 27 C -0.125 4.125 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.137 0.863 39 H 0.159 0.841 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -26.564 -20.261 -2.432 33.497 hybrid contribution 0.934 0.569 -0.441 1.179 sum -25.631 -19.692 -2.873 32.449 Atomic orbital electron populations 1.20265 0.83742 1.04574 1.03974 1.22258 0.99784 0.87074 1.07162 1.70315 1.01014 1.33185 1.16563 1.25361 0.94585 0.79451 1.04649 1.20895 0.90588 0.96904 0.82279 1.86531 1.46787 1.63321 1.30645 1.24433 0.76235 0.74141 0.93838 1.90748 1.55351 1.51171 1.44146 1.20252 0.96692 1.02204 0.89133 1.19150 0.93842 0.93243 1.09793 1.20917 0.90687 0.99746 0.95564 1.20451 1.00235 0.90160 1.11693 1.19981 0.87715 0.91807 0.93864 1.83941 1.29912 1.18973 1.80978 1.21872 0.95718 0.79644 1.51755 0.88111 1.26606 0.93914 1.05712 0.95859 1.70189 0.99580 1.37711 1.48329 0.84517 0.79477 0.73604 0.78526 1.17521 1.19096 1.19447 1.21235 0.92423 1.00722 1.12050 1.20969 0.97896 0.93022 0.95364 1.84390 1.31667 1.23483 1.69561 1.24257 0.79631 1.00310 1.04682 1.20604 1.03300 0.83108 1.05489 0.89601 0.91074 0.87778 0.87040 0.86598 0.84239 0.83797 0.83065 0.86723 0.91814 0.86344 0.84092 0.87822 0.89435 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.05 71.24 0.72 0.05 16 2 C -0.04 -0.77 7.11 41.26 0.29 -0.47 16 3 N -0.48 -11.59 11.29 -291.97 -3.30 -14.89 16 4 C 0.17 3.79 7.98 88.34 0.71 4.50 16 5 C 0.17 3.58 6.09 71.24 0.43 4.01 16 6 O -0.36 -8.13 10.20 -51.41 -0.52 -8.65 16 7 C 0.47 11.72 7.95 71.24 0.57 12.29 16 8 O -0.53 -17.40 15.78 21.96 0.35 -17.06 16 9 C -0.05 -0.93 5.94 29.10 0.17 -0.76 16 10 C -0.16 -4.88 4.38 -19.83 -0.09 -4.96 16 11 C -0.05 -1.72 9.69 22.25 0.22 -1.50 16 12 C -0.21 -8.97 9.99 22.39 0.22 -8.74 16 13 C 0.12 5.98 6.65 22.58 0.15 6.13 16 14 O -0.23 -14.27 9.76 -22.78 -0.22 -14.49 16 15 C -0.41 -24.64 9.49 67.92 0.64 -24.00 16 16 H 0.10 5.53 5.20 -2.91 -0.02 5.52 16 17 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 18 N -0.92 -57.33 13.67 21.61 0.30 -57.04 16 19 Si 1.02 43.73 29.55 68.60 2.03 45.76 16 20 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 23 C -0.25 -10.98 9.17 22.39 0.21 -10.77 16 24 C -0.05 -1.91 9.69 22.25 0.22 -1.69 16 25 O -0.20 -4.34 10.78 -3.71 -0.04 -4.38 16 26 C -0.04 -0.57 7.39 24.79 0.18 -0.38 16 27 C -0.07 -0.36 10.04 71.23 0.72 0.36 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.37 7.79 -2.39 -0.02 0.36 16 31 H 0.11 2.10 8.13 -2.38 -0.02 2.08 16 32 H 0.12 2.42 8.13 -2.39 -0.02 2.40 16 33 H 0.14 2.07 8.08 -2.39 -0.02 2.05 16 34 H 0.14 1.99 8.08 -2.39 -0.02 1.97 16 35 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 36 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.12 5.40 5.64 -2.91 -0.02 5.39 16 39 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 40 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 41 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.12 0.05 7.79 -2.39 -0.02 0.04 16 Total: -1.00 -83.80 373.36 5.46 -78.34 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 1.06 Total: 19.26 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 5.82 Total: -26.85 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -3.00 Total: -71.93 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -0.44 Total: -44.59 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -83.80 5.46 -78.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111674048.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.686 kcal (2) G-P(sol) polarization free energy of solvation -83.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds