Wall clock time and date at job start Tue Mar 31 2020 17:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.46967 * 240.00458 * 2 1 3 13 13 C 1.34711 * 116.99905 * 90.00185 * 12 2 1 14 14 O 1.21471 * 120.00417 * 359.97438 * 13 12 2 15 15 C 1.47731 * 120.00134 * 179.97438 * 13 12 2 16 16 C 1.39635 * 120.14654 * 359.72644 * 15 13 12 17 17 C 1.37945 * 119.84726 * 179.71938 * 16 15 13 18 18 C 1.38370 * 120.14793 * 0.55636 * 17 16 15 19 19 C 1.50702 * 119.84753 * 179.74040 * 18 17 16 20 20 N 1.46494 * 109.46953 * 269.97796 * 19 18 17 21 21 C 1.33882 * 122.76094 * 269.70635 * 20 19 18 22 22 O 1.21230 * 125.39504 * 359.97438 * 21 20 19 23 23 C 1.51311 * 109.20542 * 179.84484 * 21 20 19 24 24 C 1.54221 * 103.55732 * 0.38741 * 23 21 20 25 25 C 1.33871 * 122.76722 * 90.00237 * 20 19 18 26 26 O 1.21233 * 125.39335 * 359.97415 * 25 20 19 27 27 C 1.38375 * 120.30268 * 359.71832 * 18 17 16 28 28 C 1.37939 * 120.14913 * 0.02562 * 27 18 17 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08003 * 120.07708 * 359.97438 * 16 15 13 34 34 H 1.07995 * 119.92430 * 180.25197 * 17 16 15 35 35 H 1.09000 * 109.46649 * 29.97821 * 19 18 17 36 36 H 1.08996 * 109.46623 * 149.97521 * 19 18 17 37 37 H 1.09004 * 110.79544 * 241.77867 * 23 21 20 38 38 H 1.09004 * 110.41723 * 118.81554 * 23 21 20 39 39 H 1.09002 * 110.61033 * 241.25910 * 24 23 21 40 40 H 1.09005 * 110.60437 * 118.29268 * 24 23 21 41 41 H 1.08000 * 119.92060 * 180.02562 * 27 18 17 42 42 H 1.07999 * 120.07449 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 8 2.0140 -0.6844 -1.1856 13 6 2.2178 0.0669 -2.2850 14 8 1.9969 1.2610 -2.2543 15 6 2.7101 -0.5614 -3.5282 16 6 2.9705 -1.9327 -3.5654 17 6 3.4245 -2.5139 -4.7311 18 6 3.6328 -1.7393 -5.8586 19 6 4.1345 -2.3803 -7.1268 20 7 5.5992 -2.3574 -7.1392 21 6 6.3035 -1.3473 -7.6646 22 8 5.8325 -0.3563 -8.1801 23 6 7.7806 -1.6371 -7.5100 24 6 7.8081 -3.0089 -6.8058 25 6 6.3436 -3.3474 -6.6314 26 8 5.9127 -4.3552 -6.1134 27 6 3.3822 -0.3788 -5.8270 28 6 2.9230 0.2144 -4.6694 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 3.4845 33 1 2.8129 -2.5377 -2.6846 34 1 3.6224 -3.5751 -4.7624 35 1 3.7868 -3.4123 -7.1744 36 1 3.7551 -1.8290 -7.9871 37 1 8.2611 -0.8788 -6.8918 38 1 8.2604 -1.6977 -8.4869 39 1 8.3023 -2.9331 -5.8372 40 1 8.3015 -3.7519 -7.4324 41 1 3.5466 0.2199 -6.7107 42 1 2.7282 1.2764 -4.6460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:37 Heat of formation + Delta-G solvation = -127.493433 kcal Electronic energy + Delta-G solvation = -27372.141545 eV Core-core repulsion = 23282.489487 eV Total energy + Delta-G solvation = -4089.652058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.28341 -39.93010 -38.92819 -38.61202 -36.22959 -35.71480 -34.37203 -33.27332 -31.49518 -31.03480 -29.55010 -27.18313 -26.61342 -25.32830 -23.45268 -23.03691 -22.39074 -21.32461 -19.96951 -19.67117 -17.81961 -17.68026 -17.37811 -16.83231 -16.57940 -15.97937 -15.43524 -15.20022 -15.09114 -14.93807 -14.59846 -14.57693 -14.34730 -14.31032 -13.83500 -13.49909 -13.34181 -12.97790 -12.70145 -12.59584 -12.20597 -12.03129 -11.86143 -11.81007 -11.24941 -11.10039 -11.06084 -11.02581 -10.85355 -10.42924 -10.40354 -10.29370 -10.19087 -9.75087 -9.56219 -9.01975 -8.96033 -8.92201 -8.49822 -6.19217 -4.26390 0.67993 1.11408 1.35054 2.14045 2.30733 3.03827 3.26048 3.29187 3.31393 3.58874 3.61911 3.75944 3.93466 3.94950 4.30717 4.33511 4.47441 4.52004 4.87179 4.93953 4.97638 5.03659 5.09886 5.12064 5.13684 5.23381 5.36176 5.39746 5.59502 5.80393 5.99839 6.25983 6.29796 6.43590 6.48383 6.63402 6.80974 6.88758 6.90069 6.90322 7.12893 7.35878 7.57556 7.70876 7.90677 8.12007 8.59072 8.85323 9.38868 10.88262 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.002521 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.861538 B =11103.141260 C =11853.103627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.274 1.274 12 O -0.350 6.350 13 C 0.493 3.507 14 O -0.515 6.515 15 C -0.100 4.100 16 C -0.065 4.065 17 C -0.110 4.110 18 C -0.101 4.101 19 C 0.140 3.860 20 N -0.570 5.570 21 C 0.526 3.474 22 O -0.478 6.478 23 C -0.158 4.158 24 C -0.158 4.158 25 C 0.526 3.474 26 O -0.476 6.476 27 C -0.110 4.110 28 C -0.065 4.065 29 H 0.016 0.984 30 H 0.037 0.963 31 H 0.100 0.900 32 H 0.267 0.733 33 H 0.144 0.856 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.133 0.867 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.830 -7.932 -22.731 27.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.560 4.560 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.200 1.200 12 O -0.266 6.266 13 C 0.337 3.663 14 O -0.407 6.407 15 C -0.101 4.101 16 C -0.083 4.083 17 C -0.129 4.129 18 C -0.102 4.102 19 C 0.020 3.980 20 N -0.314 5.314 21 C 0.315 3.685 22 O -0.349 6.349 23 C -0.197 4.197 24 C -0.197 4.197 25 C 0.315 3.685 26 O -0.347 6.347 27 C -0.129 4.129 28 C -0.083 4.083 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.162 0.838 34 H 0.151 0.849 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.150 0.850 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.140 -7.484 -22.518 26.654 hybrid contribution 0.090 -0.208 0.959 0.985 sum 12.230 -7.692 -21.559 25.952 Atomic orbital electron populations 1.22169 0.97456 1.00183 1.01467 1.20673 0.91454 0.93959 0.77534 0.93496 1.20980 1.32648 1.13546 0.88846 0.91317 1.24892 0.94907 0.95094 0.99069 1.69892 1.35961 1.22500 1.24321 0.86313 0.79216 0.79537 0.80949 1.21012 1.19903 1.19970 1.86537 1.75723 1.43210 1.21117 1.21033 0.75152 0.85296 0.84770 1.90765 1.48812 1.16265 1.84808 1.19570 1.03379 0.94416 0.92731 1.21603 0.94403 0.93837 0.98503 1.21124 0.99361 1.00356 0.92042 1.20121 1.00495 0.94298 0.95305 1.20679 0.77209 1.03360 0.96782 1.46860 1.09015 1.21452 1.54039 1.20870 0.90267 0.81509 0.75834 1.90786 1.76927 1.26682 1.40537 1.22488 0.93759 0.98596 1.04883 1.22490 0.94058 0.98108 1.05075 1.20870 0.89920 0.81868 0.75881 1.90796 1.78616 1.25781 1.39509 1.21034 0.99576 0.93954 0.98323 1.21298 0.95352 1.00655 0.90992 0.96482 0.94365 0.88161 0.92305 0.83780 0.84930 0.87738 0.87783 0.85961 0.86147 0.85957 0.86105 0.84955 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.33 37.16 0.35 -3.66 16 2 C 0.22 5.91 2.56 -27.89 -0.07 5.84 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.80 8.90 -34.44 -0.31 -15.10 16 5 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 O -0.35 -8.53 9.12 -40.52 -0.37 -8.90 16 13 C 0.49 10.93 7.87 34.61 0.27 11.21 16 14 O -0.52 -12.65 15.61 -19.24 -0.30 -12.95 16 15 C -0.10 -1.73 5.87 -104.98 -0.62 -2.35 16 16 C -0.07 -0.99 9.62 -39.17 -0.38 -1.37 16 17 C -0.11 -1.38 9.68 -39.64 -0.38 -1.76 16 18 C -0.10 -1.15 5.47 -104.52 -0.57 -1.72 16 19 C 0.14 1.22 5.67 -5.20 -0.03 1.19 16 20 N -0.57 -4.68 2.54 -116.63 -0.30 -4.98 16 21 C 0.53 4.12 8.08 -11.08 -0.09 4.03 16 22 O -0.48 -5.27 17.47 5.60 0.10 -5.17 16 23 C -0.16 -0.54 7.03 -26.94 -0.19 -0.73 16 24 C -0.16 -0.55 7.03 -26.94 -0.19 -0.74 16 25 C 0.53 4.18 8.08 -11.09 -0.09 4.09 16 26 O -0.48 -5.37 17.48 5.60 0.10 -5.27 16 27 C -0.11 -1.36 9.68 -39.64 -0.38 -1.74 16 28 C -0.06 -0.97 9.60 -39.17 -0.38 -1.35 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.14 2.20 7.61 -52.48 -0.40 1.80 16 34 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.10 0.81 7.77 -51.93 -0.40 0.41 16 36 H 0.10 0.80 7.76 -51.93 -0.40 0.40 16 37 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.12 0.16 8.14 -51.93 -0.42 -0.27 16 39 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.12 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.14 2.06 7.65 -52.49 -0.40 1.66 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -34.78 369.26 -7.97 -42.75 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.22 Total: 0.13 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -3.15 Total: -2.52 kcal Atomic # 7 Polarization: -30.13 SS G_CDS: 0.33 Total: -29.79 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.47 Total: -32.30 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.78 -7.97 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.741 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds