Wall clock time and date at job start Tue Mar 31 2020 17:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.46967 * 240.00458 * 2 1 3 13 13 C 1.34711 * 116.99905 * 90.00185 * 12 2 1 14 14 O 1.21471 * 120.00417 * 359.97438 * 13 12 2 15 15 C 1.47731 * 120.00134 * 179.97438 * 13 12 2 16 16 C 1.39635 * 120.14654 * 359.72644 * 15 13 12 17 17 C 1.37945 * 119.84726 * 179.71938 * 16 15 13 18 18 C 1.38370 * 120.14793 * 0.55636 * 17 16 15 19 19 C 1.50702 * 119.84753 * 179.74040 * 18 17 16 20 20 N 1.46494 * 109.46953 * 269.97796 * 19 18 17 21 21 C 1.33882 * 122.76094 * 269.70635 * 20 19 18 22 22 O 1.21230 * 125.39504 * 359.97438 * 21 20 19 23 23 C 1.51311 * 109.20542 * 179.84484 * 21 20 19 24 24 C 1.54221 * 103.55732 * 0.38741 * 23 21 20 25 25 C 1.33871 * 122.76722 * 90.00237 * 20 19 18 26 26 O 1.21233 * 125.39335 * 359.97415 * 25 20 19 27 27 C 1.38375 * 120.30268 * 359.71832 * 18 17 16 28 28 C 1.37939 * 120.14913 * 0.02562 * 27 18 17 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08003 * 120.07708 * 359.97438 * 16 15 13 34 34 H 1.07995 * 119.92430 * 180.25197 * 17 16 15 35 35 H 1.09000 * 109.46649 * 29.97821 * 19 18 17 36 36 H 1.08996 * 109.46623 * 149.97521 * 19 18 17 37 37 H 1.09004 * 110.79544 * 241.77867 * 23 21 20 38 38 H 1.09004 * 110.41723 * 118.81554 * 23 21 20 39 39 H 1.09002 * 110.61033 * 241.25910 * 24 23 21 40 40 H 1.09005 * 110.60437 * 118.29268 * 24 23 21 41 41 H 1.08000 * 119.92060 * 180.02562 * 27 18 17 42 42 H 1.07999 * 120.07449 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 8 2.0140 -0.6844 -1.1856 13 6 2.2178 0.0669 -2.2850 14 8 1.9969 1.2610 -2.2543 15 6 2.7101 -0.5614 -3.5282 16 6 2.9705 -1.9327 -3.5654 17 6 3.4245 -2.5139 -4.7311 18 6 3.6328 -1.7393 -5.8586 19 6 4.1345 -2.3803 -7.1268 20 7 5.5992 -2.3574 -7.1392 21 6 6.3035 -1.3473 -7.6646 22 8 5.8325 -0.3563 -8.1801 23 6 7.7806 -1.6371 -7.5100 24 6 7.8081 -3.0089 -6.8058 25 6 6.3436 -3.3474 -6.6314 26 8 5.9127 -4.3552 -6.1134 27 6 3.3822 -0.3788 -5.8270 28 6 2.9230 0.2144 -4.6694 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 3.4845 33 1 2.8129 -2.5377 -2.6846 34 1 3.6224 -3.5751 -4.7624 35 1 3.7868 -3.4123 -7.1744 36 1 3.7551 -1.8290 -7.9871 37 1 8.2611 -0.8788 -6.8918 38 1 8.2604 -1.6977 -8.4869 39 1 8.3023 -2.9331 -5.8372 40 1 8.3015 -3.7519 -7.4324 41 1 3.5466 0.2199 -6.7107 42 1 2.7282 1.2764 -4.6460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:36 Heat of formation + Delta-G solvation = -148.079825 kcal Electronic energy + Delta-G solvation = -27373.034238 eV Core-core repulsion = 23282.489487 eV Total energy + Delta-G solvation = -4090.544751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.87659 -41.54294 -39.97812 -39.59589 -37.65066 -36.89592 -35.41653 -35.02738 -32.53444 -32.16476 -31.53263 -28.15796 -27.49305 -27.05875 -24.87425 -23.95347 -23.15087 -22.92828 -21.50850 -20.47609 -19.32774 -18.59446 -18.36293 -18.21398 -17.70254 -17.37400 -16.89254 -16.67120 -16.37247 -16.03862 -15.81600 -15.48769 -15.23116 -14.89228 -14.85008 -14.59169 -14.41661 -14.37695 -14.04969 -13.77651 -13.42834 -13.33155 -13.24001 -13.11727 -12.99275 -12.84557 -12.43739 -12.20368 -12.15038 -12.07849 -11.70317 -11.66940 -11.57729 -11.06056 -11.03844 -10.90214 -10.63519 -10.14678 -10.11813 -8.31833 -6.49530 -0.54965 0.22605 0.54211 1.30418 1.40113 1.44628 1.52491 1.71092 1.75958 1.86847 2.38454 2.65421 2.98775 3.23908 3.31940 3.47357 3.62895 3.67622 3.77651 3.84479 4.05036 4.17287 4.21455 4.38195 4.42209 4.45648 4.53002 4.65131 4.72988 4.76083 4.80719 4.90032 4.93037 4.96519 5.00690 5.14330 5.23646 5.30059 5.43357 5.55945 5.68795 5.83442 5.83713 5.99306 6.34294 6.54082 6.76709 6.83303 7.21738 8.76062 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.002521 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.861538 B =11103.141260 C =11853.103627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.218 3.782 3 H 0.007 0.993 4 C -0.551 4.551 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.986 3.014 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.268 1.268 12 O -0.354 6.354 13 C 0.489 3.511 14 O -0.550 6.550 15 C -0.128 4.128 16 C -0.067 4.067 17 C -0.103 4.103 18 C -0.080 4.080 19 C 0.136 3.864 20 N -0.575 5.575 21 C 0.520 3.480 22 O -0.515 6.515 23 C -0.145 4.145 24 C -0.146 4.146 25 C 0.519 3.481 26 O -0.515 6.515 27 C -0.102 4.102 28 C -0.066 4.066 29 H 0.022 0.978 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.272 0.728 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.136 0.864 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.139 -9.802 -24.169 30.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.588 4.588 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.808 3.192 9 H -0.201 1.201 10 H -0.187 1.187 11 H -0.193 1.193 12 O -0.271 6.271 13 C 0.336 3.664 14 O -0.443 6.443 15 C -0.129 4.129 16 C -0.085 4.085 17 C -0.121 4.121 18 C -0.081 4.081 19 C 0.015 3.985 20 N -0.318 5.318 21 C 0.311 3.689 22 O -0.389 6.389 23 C -0.184 4.184 24 C -0.185 4.185 25 C 0.311 3.689 26 O -0.388 6.388 27 C -0.120 4.120 28 C -0.084 4.084 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.156 0.844 34 H 0.168 0.832 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.167 0.833 39 H 0.154 0.846 40 H 0.167 0.833 41 H 0.170 0.830 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 14.467 -9.360 -23.985 29.533 hybrid contribution -0.595 0.377 1.239 1.425 sum 13.872 -8.983 -22.746 28.116 Atomic orbital electron populations 1.21996 0.96616 1.00520 1.00870 1.20415 0.92143 0.92115 0.78871 0.97494 1.21254 1.33724 1.14071 0.89801 0.91301 1.25875 0.94624 0.95660 1.02205 1.70015 1.36431 1.23602 1.25414 0.85190 0.78806 0.78625 0.76535 1.20088 1.18713 1.19251 1.86524 1.76130 1.43190 1.21221 1.21904 0.74116 0.85069 0.85288 1.90730 1.50561 1.17685 1.85312 1.19353 1.06815 0.95573 0.91202 1.21585 0.94653 0.92771 0.99473 1.21256 0.98438 1.01194 0.91231 1.20460 0.97867 0.93805 0.96017 1.20730 0.78303 1.03977 0.95443 1.47020 1.08645 1.21996 1.54125 1.21668 0.92077 0.80540 0.74567 1.90773 1.77921 1.28029 1.42170 1.22599 0.90410 0.98706 1.06710 1.22601 0.90773 0.98681 1.06399 1.21677 0.91723 0.80944 0.74581 1.90780 1.79589 1.27229 1.41240 1.21189 0.98506 0.94556 0.97723 1.21332 0.95513 1.00411 0.91140 0.95942 0.93394 0.89778 0.91864 0.84430 0.83211 0.86579 0.86518 0.84526 0.83302 0.84595 0.83282 0.83046 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.63 9.33 71.98 0.67 -6.96 16 2 C 0.22 12.47 2.56 29.85 0.08 12.55 16 3 H 0.01 0.46 7.16 -2.39 -0.02 0.45 16 4 C -0.55 -32.05 8.90 25.60 0.23 -31.83 16 5 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -53.53 11.32 21.45 0.24 -53.29 16 8 Si 0.99 43.32 29.54 68.60 2.03 45.34 16 9 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 O -0.35 -18.14 9.12 -56.21 -0.51 -18.65 16 13 C 0.49 22.88 7.87 70.33 0.55 23.43 16 14 O -0.55 -28.68 15.61 19.93 0.31 -28.37 16 15 C -0.13 -4.60 5.87 -20.10 -0.12 -4.71 16 16 C -0.07 -2.03 9.62 22.54 0.22 -1.81 16 17 C -0.10 -2.44 9.68 22.23 0.22 -2.22 16 18 C -0.08 -1.68 5.47 -19.80 -0.11 -1.79 16 19 C 0.14 2.05 5.67 85.63 0.49 2.54 16 20 N -0.58 -7.98 2.54 -760.74 -1.93 -9.90 16 21 C 0.52 6.73 8.08 87.99 0.71 7.44 16 22 O -0.52 -10.34 17.47 -2.87 -0.05 -10.39 16 23 C -0.15 -0.40 7.03 30.46 0.21 -0.19 16 24 C -0.15 -0.43 7.03 30.46 0.21 -0.21 16 25 C 0.52 6.87 8.08 87.99 0.71 7.58 16 26 O -0.51 -10.61 17.48 -2.88 -0.05 -10.66 16 27 C -0.10 -2.37 9.68 22.23 0.22 -2.15 16 28 C -0.07 -1.99 9.60 22.53 0.22 -1.77 16 29 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.08 4.78 6.07 -2.39 -0.01 4.76 16 32 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 33 H 0.14 4.32 7.61 -2.91 -0.02 4.30 16 34 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.12 1.52 7.77 -2.39 -0.02 1.51 16 36 H 0.12 1.50 7.76 -2.39 -0.02 1.49 16 37 H 0.14 0.10 8.14 -2.38 -0.02 0.08 16 38 H 0.15 -0.35 8.14 -2.38 -0.02 -0.36 16 39 H 0.14 0.14 8.14 -2.39 -0.02 0.13 16 40 H 0.15 -0.32 8.14 -2.38 -0.02 -0.34 16 41 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 42 H 0.13 4.12 7.65 -2.91 -0.02 4.09 16 Total: -1.00 -79.16 369.26 6.04 -73.12 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.05 Total: 11.57 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 4.95 Total: 1.24 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -1.69 Total: -63.20 kcal Atomic # 8 Polarization: -67.77 SS G_CDS: -0.30 Total: -68.07 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -79.16 6.04 -73.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.960 kcal (2) G-P(sol) polarization free energy of solvation -79.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds