Wall clock time and date at job start Tue Mar 31 2020 17:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47070 * 2 1 4 4 C 1.50700 * 109.47005 * 240.00268 * 2 1 3 5 5 H 1.08003 * 119.99965 * 245.62459 * 4 2 1 6 6 C 1.37884 * 120.00226 * 65.63011 * 4 2 1 7 7 N 1.31512 * 119.99622 * 197.18936 * 6 4 2 8 8 Si 1.86801 * 119.99691 * 17.45799 * 6 4 2 9 9 H 1.48505 * 109.46871 * 179.72530 * 8 6 4 10 10 H 1.48500 * 109.47358 * 299.72886 * 8 6 4 11 11 H 1.48506 * 109.46949 * 59.73103 * 8 6 4 12 12 O 1.45202 * 109.47123 * 120.00271 * 2 1 3 13 13 C 1.34714 * 116.99779 * 270.00147 * 12 2 1 14 14 O 1.21473 * 119.99956 * 0.02562 * 13 12 2 15 15 C 1.47730 * 119.99751 * 179.97438 * 13 12 2 16 16 C 1.39630 * 120.14866 * 359.72583 * 15 13 12 17 17 C 1.37939 * 119.84366 * 179.72309 * 16 15 13 18 18 C 1.38369 * 120.15412 * 0.55113 * 17 16 15 19 19 C 1.50696 * 119.84929 * 179.74244 * 18 17 16 20 20 N 1.46495 * 109.47325 * 269.97455 * 19 18 17 21 21 C 1.33875 * 122.76787 * 269.71246 * 20 19 18 22 22 O 1.21228 * 125.39461 * 359.97438 * 21 20 19 23 23 C 1.51315 * 109.20740 * 179.84141 * 21 20 19 24 24 C 1.54225 * 103.55620 * 0.39023 * 23 21 20 25 25 C 1.33878 * 122.75665 * 90.00249 * 20 19 18 26 26 O 1.21224 * 125.39855 * 359.97438 * 25 20 19 27 27 C 1.38367 * 120.29951 * 359.72121 * 18 17 16 28 28 C 1.37945 * 120.15025 * 0.02562 * 27 18 17 29 29 H 1.09005 * 109.47195 * 66.33117 * 1 2 3 30 30 H 1.08995 * 109.47065 * 186.32702 * 1 2 3 31 31 H 1.09001 * 109.47179 * 306.33357 * 1 2 3 32 32 H 0.96989 * 120.00236 * 355.16073 * 7 6 4 33 33 H 1.08004 * 120.07600 * 359.97438 * 16 15 13 34 34 H 1.08004 * 119.92545 * 180.25058 * 17 16 15 35 35 H 1.08998 * 109.47097 * 29.98200 * 19 18 17 36 36 H 1.09013 * 109.46817 * 149.98009 * 19 18 17 37 37 H 1.08995 * 110.79758 * 241.77949 * 23 21 20 38 38 H 1.08998 * 110.41708 * 118.81522 * 23 21 20 39 39 H 1.09001 * 110.60548 * 241.25987 * 24 23 21 40 40 H 1.08993 * 110.61269 * 118.29049 * 24 23 21 41 41 H 1.07995 * 119.92712 * 180.02562 * 27 18 17 42 42 H 1.08006 * 120.07656 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5763 -1.6384 -1.1341 6 6 1.7976 -0.1755 -2.4795 7 7 1.9224 -0.9278 -3.5510 8 14 1.3098 1.6196 -2.6501 9 1 1.1229 1.9474 -4.0864 10 1 0.0400 1.8593 -1.9183 11 1 2.3788 2.4793 -2.0812 12 8 2.0140 -0.6845 1.1855 13 6 2.2179 0.0666 2.2851 14 8 1.9968 1.2607 2.2544 15 6 2.7091 -0.5620 3.5284 16 6 2.9576 -1.9354 3.5690 17 6 3.4217 -2.5149 4.7316 18 6 3.6300 -1.7405 5.8592 19 6 4.1315 -2.3817 7.1273 20 7 2.9919 -2.8191 7.9372 21 6 2.4126 -2.0360 8.8557 22 8 2.7481 -0.9025 9.1243 23 6 1.2707 -2.7888 9.5029 24 6 1.2971 -4.1608 8.7989 25 6 2.4475 -4.0369 7.8238 26 8 2.8173 -4.9031 7.0605 27 6 3.3803 -0.3799 5.8275 28 6 2.9210 0.2135 4.6700 29 1 -0.3634 0.4126 -0.9413 30 1 -0.3633 -1.0214 0.1132 31 1 -0.3633 0.6089 0.8279 32 1 2.2469 -1.8381 -3.4693 33 1 2.7909 -2.5419 2.6910 34 1 3.6182 -3.5765 4.7633 35 1 4.7521 -3.2425 6.8784 36 1 4.7218 -1.6591 7.6910 37 1 0.3222 -2.2832 9.3224 38 1 1.4482 -2.9030 10.5723 39 1 0.3616 -4.3376 8.2681 40 1 1.4878 -4.9574 9.5179 41 1 3.5453 0.2189 6.7110 42 1 2.7261 1.2755 4.6467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:40 Heat of formation + Delta-G solvation = -148.788631 kcal Electronic energy + Delta-G solvation = -27435.606891 eV Core-core repulsion = 23345.031403 eV Total energy + Delta-G solvation = -4090.575487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.89676 -41.63738 -40.04300 -39.61608 -37.75179 -36.91737 -35.45547 -35.05942 -32.81061 -32.20274 -32.02323 -28.21401 -27.07498 -27.06367 -24.86241 -23.99414 -23.14476 -22.80958 -21.51078 -20.49698 -20.01646 -19.03891 -18.40067 -18.25337 -17.86152 -17.39323 -17.04901 -16.44046 -16.26212 -15.92996 -15.79101 -15.50185 -15.25087 -14.93984 -14.88817 -14.85585 -14.63151 -14.44847 -14.36998 -13.91577 -13.69418 -13.50709 -13.38677 -13.36078 -13.08782 -12.55070 -12.21533 -12.13041 -12.09162 -11.86198 -11.72033 -11.69224 -11.59625 -11.10113 -11.05605 -10.92670 -10.60231 -10.18334 -10.15838 -8.98762 -6.60503 -0.59658 0.18961 0.52534 1.25018 1.37570 1.44810 1.63250 1.67881 1.73321 1.78932 2.32347 2.61188 2.86610 3.22153 3.30245 3.42489 3.59377 3.65578 3.69835 3.80673 4.00208 4.13968 4.18799 4.19952 4.35631 4.37928 4.47092 4.50078 4.55031 4.61853 4.75855 4.79534 4.87056 4.91818 4.95349 5.05604 5.17875 5.23276 5.26491 5.35759 5.64917 5.72045 5.81924 5.87214 6.32572 6.32731 6.73853 6.74909 7.16605 8.43951 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.023059 B = 0.002471 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.984208 B =11327.638005 C =11758.504001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.194 3.806 3 H 0.031 0.969 4 C -0.619 4.619 5 H 0.032 0.968 6 C -0.002 4.002 7 N -0.915 5.915 8 Si 1.073 2.927 9 H -0.270 1.270 10 H -0.239 1.239 11 H -0.270 1.270 12 O -0.352 6.352 13 C 0.491 3.509 14 O -0.541 6.541 15 C -0.130 4.130 16 C -0.069 4.069 17 C -0.105 4.105 18 C -0.079 4.079 19 C 0.136 3.864 20 N -0.575 5.575 21 C 0.520 3.480 22 O -0.514 6.514 23 C -0.145 4.145 24 C -0.145 4.145 25 C 0.519 3.481 26 O -0.516 6.516 27 C -0.101 4.101 28 C -0.061 4.061 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.259 0.741 33 H 0.132 0.868 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.149 0.851 39 H 0.137 0.863 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 -5.748 32.549 33.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.140 3.860 3 H 0.049 0.951 4 C -0.657 4.657 5 H 0.050 0.950 6 C -0.202 4.202 7 N -0.549 5.549 8 Si 0.892 3.108 9 H -0.195 1.195 10 H -0.164 1.164 11 H -0.195 1.195 12 O -0.268 6.268 13 C 0.338 3.662 14 O -0.434 6.434 15 C -0.131 4.131 16 C -0.088 4.088 17 C -0.123 4.123 18 C -0.080 4.080 19 C 0.015 3.985 20 N -0.318 5.318 21 C 0.312 3.688 22 O -0.388 6.388 23 C -0.184 4.184 24 C -0.184 4.184 25 C 0.310 3.690 26 O -0.390 6.390 27 C -0.119 4.119 28 C -0.080 4.080 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.172 0.828 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.076 -4.162 31.111 31.406 hybrid contribution 0.932 -1.281 0.039 1.585 sum -0.144 -5.444 31.149 31.622 Atomic orbital electron populations 1.22455 0.95779 1.01803 1.01902 1.20722 0.92557 0.93047 0.79660 0.95129 1.22027 1.41925 1.09979 0.91748 0.95010 1.27056 0.93825 1.08538 0.90814 1.70973 1.42314 1.09830 1.31773 0.83732 0.79150 0.70264 0.77622 1.19527 1.16365 1.19528 1.86586 1.76232 1.42985 1.20980 1.21865 0.74115 0.85154 0.85070 1.90719 1.50350 1.17104 1.85189 1.19335 1.07029 0.95332 0.91394 1.21548 0.94925 0.93040 0.99264 1.21232 0.98613 1.00982 0.91483 1.20455 0.98120 0.93864 0.95580 1.20727 0.87553 1.01869 0.88378 1.47024 1.31942 1.16708 1.36112 1.21668 0.84059 0.85188 0.77895 1.90772 1.66514 1.17787 1.63729 1.22599 0.97887 0.94100 1.03768 1.22603 0.97585 1.00042 0.98206 1.21708 0.84320 0.79798 0.83159 1.90783 1.65343 1.43234 1.39629 1.21218 0.98444 0.94539 0.97720 1.21362 0.95196 1.00587 0.90819 0.90693 0.92357 0.93087 0.93157 0.85047 0.83566 0.86822 0.86420 0.84376 0.83319 0.84528 0.83347 0.82837 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.47 9.23 71.98 0.66 -6.80 16 2 C 0.19 10.20 2.15 29.85 0.06 10.26 16 3 H 0.03 1.66 5.82 -2.39 -0.01 1.65 16 4 C -0.62 -37.02 9.16 25.60 0.23 -36.79 16 5 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 6 C 0.00 -0.09 5.29 84.66 0.45 0.35 16 7 N -0.92 -56.80 13.70 21.45 0.29 -56.51 16 8 Si 1.07 50.28 26.29 68.60 1.80 52.08 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.24 -9.98 5.76 99.48 0.57 -9.41 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 O -0.35 -17.28 9.12 -56.23 -0.51 -17.79 16 13 C 0.49 21.39 7.87 70.33 0.55 21.94 16 14 O -0.54 -25.31 15.61 19.92 0.31 -25.00 16 15 C -0.13 -4.42 5.87 -20.10 -0.12 -4.54 16 16 C -0.07 -2.10 9.62 22.54 0.22 -1.89 16 17 C -0.10 -2.48 9.68 22.23 0.22 -2.27 16 18 C -0.08 -1.61 5.47 -19.80 -0.11 -1.72 16 19 C 0.14 2.00 5.67 85.63 0.49 2.49 16 20 N -0.58 -7.64 2.54 -760.72 -1.93 -9.57 16 21 C 0.52 6.26 8.08 87.99 0.71 6.97 16 22 O -0.51 -9.77 17.47 -2.87 -0.05 -9.82 16 23 C -0.14 -0.26 7.03 30.46 0.21 -0.05 16 24 C -0.15 -0.33 7.03 30.46 0.21 -0.12 16 25 C 0.52 6.65 8.08 87.99 0.71 7.36 16 26 O -0.52 -10.63 17.48 -2.86 -0.05 -10.68 16 27 C -0.10 -2.21 9.68 22.23 0.22 -2.00 16 28 C -0.06 -1.73 9.60 22.53 0.22 -1.51 16 29 H 0.07 3.40 4.88 -2.38 -0.01 3.38 16 30 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.26 16.25 8.73 -92.72 -0.81 15.44 16 33 H 0.13 4.24 7.61 -2.91 -0.02 4.22 16 34 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 35 H 0.11 1.52 7.77 -2.39 -0.02 1.50 16 36 H 0.12 1.47 7.76 -2.38 -0.02 1.45 16 37 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.15 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.15 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.14 3.86 7.65 -2.91 -0.02 3.84 16 Total: -1.00 -80.68 364.90 5.69 -74.99 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.88 Total: 10.61 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 4.94 Total: -8.31 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -1.64 Total: -66.08 kcal Atomic # 8 Polarization: -62.99 SS G_CDS: -0.30 Total: -63.29 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 1.80 Total: 52.08 kcal Total: -80.68 5.69 -74.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.794 kcal (2) G-P(sol) polarization free energy of solvation -80.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds