Wall clock time and date at job start Tue Mar 31 2020 15:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34220 * 117.00130 * 2 1 4 4 O 1.20827 * 120.00098 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00013 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.47333 * 180.02562 * 5 3 2 7 7 C 1.37098 * 120.00218 * 270.00429 * 6 5 3 8 8 H 1.07994 * 120.00056 * 202.99587 * 7 6 5 9 9 C 1.38950 * 119.99806 * 22.99421 * 7 6 5 10 10 N 1.31409 * 120.00074 * 351.25745 * 9 7 6 11 11 Si 1.86802 * 119.99677 * 171.26046 * 9 7 6 12 12 H 1.48505 * 109.47443 * 60.00040 * 11 9 7 13 13 H 1.48501 * 109.47077 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47199 * 299.99791 * 11 9 7 15 15 C 1.34772 * 119.99908 * 90.00018 * 6 5 3 16 16 O 1.21295 * 119.99893 * 5.02325 * 15 6 5 17 17 C 1.50693 * 120.00380 * 185.01943 * 15 6 5 18 18 C 1.50701 * 109.47449 * 174.83510 * 17 15 6 19 19 C 1.33995 * 126.90744 * 264.97583 * 18 17 15 20 20 O 1.34448 * 110.15198 * 180.02562 * 19 18 17 21 21 C 1.34807 * 110.88976 * 359.97438 * 20 19 18 22 22 C 1.38945 * 133.49570 * 180.28959 * 21 20 19 23 23 C 1.37849 * 119.82174 * 180.13284 * 22 21 20 24 24 C 1.50696 * 119.66411 * 179.75654 * 23 22 21 25 25 C 1.38743 * 120.68082 * 359.54657 * 23 22 21 26 26 C 1.36744 * 120.41832 * 0.23060 * 25 23 22 27 27 C 1.39409 * 119.71537 * 359.97438 * 26 25 23 28 28 H 1.09001 * 109.47264 * 299.99724 * 1 2 3 29 29 H 1.09005 * 109.47032 * 59.99468 * 1 2 3 30 30 H 1.09001 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46945 * 60.00333 * 5 3 2 32 32 H 1.09001 * 109.47429 * 300.00225 * 5 3 2 33 33 H 0.97005 * 119.99543 * 185.01036 * 10 9 7 34 34 H 1.08997 * 109.47148 * 54.83447 * 17 15 6 35 35 H 1.09007 * 109.47107 * 294.83561 * 17 15 6 36 36 H 1.07991 * 124.92082 * 0.04167 * 19 18 17 37 37 H 1.08000 * 120.09154 * 359.95579 * 22 21 20 38 38 H 1.09002 * 109.46970 * 269.79749 * 24 23 22 39 39 H 1.09005 * 109.46809 * 29.78766 * 24 23 22 40 40 H 1.08994 * 109.47513 * 149.79400 * 24 23 22 41 41 H 1.08004 * 119.79470 * 180.20919 * 25 23 22 42 42 H 1.08004 * 120.13943 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.1765 3.3374 -1.1860 8 1 4.8149 4.2076 -1.2227 9 6 3.5526 2.8842 -2.3418 10 7 2.9175 1.7337 -2.3378 11 14 3.6166 3.9103 -3.9014 12 1 5.0314 4.1030 -4.3095 13 1 2.8794 3.2112 -4.9845 14 1 2.9894 5.2327 -3.6501 15 6 4.1724 3.3255 1.1685 16 8 4.0892 2.7209 2.2167 17 6 4.4890 4.7988 1.1716 18 6 4.5292 5.3011 2.5919 19 6 3.5283 5.8797 3.2693 20 8 3.9325 6.1970 4.5117 21 6 5.2180 5.8397 4.7049 22 6 6.0859 5.9383 5.7854 23 6 7.3782 5.4721 5.6714 24 6 8.3182 5.5857 6.8437 25 6 7.8210 4.8952 4.4898 26 6 6.9814 4.7845 3.4162 27 6 5.6723 5.2543 3.5114 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9563 0.7805 -0.8892 32 1 3.9557 0.7808 0.8908 33 1 2.5445 1.3828 -3.1616 34 1 3.7199 5.3369 0.6175 35 1 5.4583 4.9632 0.7006 36 1 2.5401 6.0641 2.8747 37 1 5.7500 6.3816 6.7111 38 1 8.8513 6.5351 6.7912 39 1 7.7486 5.5399 7.7719 40 1 9.0346 4.7648 6.8160 41 1 8.8354 4.5316 4.4173 42 1 7.3310 4.3351 2.4984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120668281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:52 Heat of formation + Delta-G solvation = -80.288758 kcal Electronic energy + Delta-G solvation = -28367.587358 eV Core-core repulsion = 24279.982248 eV Total energy + Delta-G solvation = -4087.605110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.12012 -39.43689 -38.27695 -38.01895 -35.50773 -34.58166 -33.60375 -31.62331 -31.48033 -30.28533 -28.98844 -27.38256 -26.33507 -25.98118 -24.48710 -22.99224 -21.20408 -20.71874 -19.71134 -19.12127 -17.31414 -16.91496 -16.58765 -16.50644 -16.16703 -15.66736 -15.46215 -15.19099 -15.10453 -14.36977 -14.16299 -14.09718 -13.94636 -13.63435 -13.58859 -12.82731 -12.72578 -12.46144 -12.28254 -12.18431 -12.01230 -11.73949 -11.56971 -11.49591 -11.33673 -11.21957 -11.03943 -10.85497 -10.59791 -10.53630 -10.50248 -9.82579 -9.59452 -9.53517 -9.02613 -8.62752 -8.33364 -7.97768 -7.73047 -6.47835 -4.11251 1.16408 1.59201 2.68019 3.06457 3.10098 3.15527 3.16332 3.49709 3.72471 3.90463 3.99656 4.07717 4.72912 4.77129 4.87989 4.97769 4.99305 5.11987 5.34150 5.37664 5.51635 5.61887 5.69739 5.70147 5.75598 5.77368 5.85783 5.94903 6.00879 6.12053 6.23786 6.27769 6.31250 6.48094 6.53841 6.58945 6.66393 6.77062 6.89561 6.91634 7.27315 7.47742 7.48248 7.62149 8.21414 8.94436 9.12778 9.33639 9.73960 10.53564 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003489 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.418208 B = 8022.669688 C = 8840.836075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.491 3.509 4 O -0.516 6.516 5 C 0.155 3.845 6 N -0.435 5.435 7 C -0.328 4.328 8 H 0.102 0.898 9 C 0.043 3.957 10 N -0.884 5.884 11 Si 0.932 3.068 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.474 3.526 16 O -0.592 6.592 17 C -0.053 4.053 18 C -0.135 4.135 19 C 0.000 4.000 20 O -0.197 6.197 21 C 0.052 3.948 22 C -0.113 4.113 23 C -0.071 4.071 24 C -0.108 4.108 25 C -0.141 4.141 26 C -0.057 4.057 27 C -0.111 4.111 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.076 0.924 33 H 0.274 0.726 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.205 0.795 37 H 0.126 0.874 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.125 0.875 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 4.340 7.992 10.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.290 6.290 3 C 0.333 3.667 4 O -0.402 6.402 5 C 0.029 3.971 6 N -0.154 5.154 7 C -0.456 4.456 8 H 0.120 0.880 9 C -0.160 4.160 10 N -0.524 5.524 11 Si 0.759 3.241 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.263 3.737 16 O -0.477 6.477 17 C -0.093 4.093 18 C -0.136 4.136 19 C -0.064 4.064 20 O -0.099 6.099 21 C 0.005 3.995 22 C -0.132 4.132 23 C -0.071 4.071 24 C -0.165 4.165 25 C -0.159 4.159 26 C -0.075 4.075 27 C -0.112 4.112 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.155 0.845 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.222 0.778 37 H 0.144 0.856 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.143 0.857 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.824 4.375 8.560 10.755 hybrid contribution -0.536 0.343 -1.361 1.503 sum 4.288 4.718 7.198 9.615 Atomic orbital electron populations 1.22916 0.78972 1.01762 1.01448 1.86465 1.21422 1.35545 1.85604 1.23993 0.92381 0.80385 0.69891 1.90488 1.66754 1.36486 1.46485 1.20630 0.86859 0.85638 1.03944 1.43317 1.58457 1.08416 1.05259 1.19621 1.27738 1.13069 0.85124 0.88010 1.25290 0.94232 0.96277 1.00203 1.69597 1.36313 1.17843 1.28673 0.85909 0.78391 0.79785 0.80041 1.19814 1.20873 1.19722 1.20097 0.81647 0.88526 0.83393 1.90570 1.57148 1.68422 1.31582 1.19800 1.03979 0.94711 0.90788 1.20751 0.92518 1.03280 0.97077 1.23658 0.99541 1.01628 0.81575 1.83956 1.25094 1.68897 1.31943 1.19557 0.83530 1.00216 0.96217 1.19632 0.91797 1.05342 0.96418 1.19544 0.93363 0.98295 0.95874 1.20740 0.98068 1.02330 0.95340 1.20578 0.99970 1.02547 0.92854 1.20288 0.91322 0.96895 0.98990 1.19776 0.95178 1.02451 0.93819 0.93262 0.92805 0.89633 0.84453 0.90619 0.91504 0.88216 0.89037 0.77822 0.85590 0.91184 0.91584 0.91352 0.85738 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.37 -8.18 10.56 -39.23 -0.41 -8.60 16 3 C 0.49 12.23 5.92 36.01 0.21 12.45 16 4 O -0.52 -14.17 15.94 -18.75 -0.30 -14.47 16 5 C 0.15 3.74 5.29 -5.19 -0.03 3.71 16 6 N -0.43 -10.72 2.11 -116.10 -0.25 -10.96 16 7 C -0.33 -7.93 9.00 -14.93 -0.13 -8.06 16 8 H 0.10 2.25 6.72 -52.49 -0.35 1.90 16 9 C 0.04 1.05 5.41 -17.47 -0.09 0.95 16 10 N -0.88 -22.22 8.21 55.50 0.46 -21.76 16 11 Si 0.93 19.11 29.56 -169.99 -5.03 14.08 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 15 C 0.47 11.33 7.61 -10.99 -0.08 11.25 16 16 O -0.59 -15.65 15.60 5.54 0.09 -15.56 16 17 C -0.05 -1.04 4.80 -29.04 -0.14 -1.18 16 18 C -0.13 -2.54 4.85 -102.66 -0.50 -3.04 16 19 C 0.00 0.00 11.89 29.24 0.35 0.35 16 20 O -0.20 -3.44 10.58 3.92 0.04 -3.40 16 21 C 0.05 0.90 7.42 -38.47 -0.29 0.61 16 22 C -0.11 -1.61 9.70 -39.46 -0.38 -1.99 16 23 C -0.07 -0.90 5.88 -104.58 -0.61 -1.51 16 24 C -0.11 -0.95 9.99 36.00 0.36 -0.59 16 25 C -0.14 -1.90 9.62 -39.94 -0.38 -2.29 16 26 C -0.06 -0.92 10.05 -39.69 -0.40 -1.32 16 27 C -0.11 -2.03 6.38 -105.16 -0.67 -2.70 16 28 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.05 0.98 8.13 -51.93 -0.42 0.55 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.14 3.33 6.28 -51.93 -0.33 3.00 16 32 H 0.08 1.77 7.36 -51.93 -0.38 1.39 16 33 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 34 H 0.10 1.87 8.03 -51.93 -0.42 1.46 16 35 H 0.09 1.63 7.74 -51.93 -0.40 1.23 16 36 H 0.21 2.88 8.06 -52.49 -0.42 2.45 16 37 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 40 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 41 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 42 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -32.28 363.66 -6.88 -39.17 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.24 Total: 7.53 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.73 Total: 8.49 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.21 Total: -32.73 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.59 Total: -42.03 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.28 -6.88 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120668281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.121 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds