Wall clock time and date at job start Tue Mar 31 2020 15:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34220 * 117.00130 * 2 1 4 4 O 1.20827 * 120.00098 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00013 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.47333 * 180.02562 * 5 3 2 7 7 C 1.37098 * 120.00218 * 270.00429 * 6 5 3 8 8 H 1.07994 * 120.00056 * 202.99587 * 7 6 5 9 9 C 1.38950 * 119.99806 * 22.99421 * 7 6 5 10 10 N 1.31409 * 120.00074 * 351.25745 * 9 7 6 11 11 Si 1.86802 * 119.99677 * 171.26046 * 9 7 6 12 12 H 1.48505 * 109.47443 * 60.00040 * 11 9 7 13 13 H 1.48501 * 109.47077 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47199 * 299.99791 * 11 9 7 15 15 C 1.34772 * 119.99908 * 90.00018 * 6 5 3 16 16 O 1.21295 * 119.99893 * 5.02325 * 15 6 5 17 17 C 1.50693 * 120.00380 * 185.01943 * 15 6 5 18 18 C 1.50701 * 109.47449 * 174.83510 * 17 15 6 19 19 C 1.33995 * 126.90744 * 264.97583 * 18 17 15 20 20 O 1.34448 * 110.15198 * 180.02562 * 19 18 17 21 21 C 1.34807 * 110.88976 * 359.97438 * 20 19 18 22 22 C 1.38945 * 133.49570 * 180.28959 * 21 20 19 23 23 C 1.37849 * 119.82174 * 180.13284 * 22 21 20 24 24 C 1.50696 * 119.66411 * 179.75654 * 23 22 21 25 25 C 1.38743 * 120.68082 * 359.54657 * 23 22 21 26 26 C 1.36744 * 120.41832 * 0.23060 * 25 23 22 27 27 C 1.39409 * 119.71537 * 359.97438 * 26 25 23 28 28 H 1.09001 * 109.47264 * 299.99724 * 1 2 3 29 29 H 1.09005 * 109.47032 * 59.99468 * 1 2 3 30 30 H 1.09001 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46945 * 60.00333 * 5 3 2 32 32 H 1.09001 * 109.47429 * 300.00225 * 5 3 2 33 33 H 0.97005 * 119.99543 * 185.01036 * 10 9 7 34 34 H 1.08997 * 109.47148 * 54.83447 * 17 15 6 35 35 H 1.09007 * 109.47107 * 294.83561 * 17 15 6 36 36 H 1.07991 * 124.92082 * 0.04167 * 19 18 17 37 37 H 1.08000 * 120.09154 * 359.95579 * 22 21 20 38 38 H 1.09002 * 109.46970 * 269.79749 * 24 23 22 39 39 H 1.09005 * 109.46809 * 29.78766 * 24 23 22 40 40 H 1.08994 * 109.47513 * 149.79400 * 24 23 22 41 41 H 1.08004 * 119.79470 * 180.20919 * 25 23 22 42 42 H 1.08004 * 120.13943 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.1765 3.3374 -1.1860 8 1 4.8149 4.2076 -1.2227 9 6 3.5526 2.8842 -2.3418 10 7 2.9175 1.7337 -2.3378 11 14 3.6166 3.9103 -3.9014 12 1 5.0314 4.1030 -4.3095 13 1 2.8794 3.2112 -4.9845 14 1 2.9894 5.2327 -3.6501 15 6 4.1724 3.3255 1.1685 16 8 4.0892 2.7209 2.2167 17 6 4.4890 4.7988 1.1716 18 6 4.5292 5.3011 2.5919 19 6 3.5283 5.8797 3.2693 20 8 3.9325 6.1970 4.5117 21 6 5.2180 5.8397 4.7049 22 6 6.0859 5.9383 5.7854 23 6 7.3782 5.4721 5.6714 24 6 8.3182 5.5857 6.8437 25 6 7.8210 4.8952 4.4898 26 6 6.9814 4.7845 3.4162 27 6 5.6723 5.2543 3.5114 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9563 0.7805 -0.8892 32 1 3.9557 0.7808 0.8908 33 1 2.5445 1.3828 -3.1616 34 1 3.7199 5.3369 0.6175 35 1 5.4583 4.9632 0.7006 36 1 2.5401 6.0641 2.8747 37 1 5.7500 6.3816 6.7111 38 1 8.8513 6.5351 6.7912 39 1 7.7486 5.5399 7.7719 40 1 9.0346 4.7648 6.8160 41 1 8.8354 4.5316 4.4173 42 1 7.3310 4.3351 2.4984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120668281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:51 Heat of formation + Delta-G solvation = -97.411051 kcal Electronic energy + Delta-G solvation = -28368.329836 eV Core-core repulsion = 24279.982248 eV Total energy + Delta-G solvation = -4088.347588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.38225 -41.32026 -40.11981 -39.12048 -37.35617 -36.49293 -34.96921 -33.46565 -32.66038 -31.43026 -30.68523 -28.87354 -27.72016 -27.28258 -26.29961 -24.15928 -22.50364 -22.26238 -21.37687 -20.77236 -18.97111 -18.47080 -18.15239 -18.11657 -17.70003 -17.27239 -17.07733 -16.87752 -16.34809 -16.06054 -15.84874 -15.66769 -15.20599 -14.76716 -14.58066 -14.38025 -14.28035 -14.21479 -13.67468 -13.49861 -13.27517 -12.98653 -12.92861 -12.89712 -12.87818 -12.68897 -12.58345 -12.42047 -12.36510 -12.14517 -11.75859 -11.58571 -11.47390 -10.93487 -10.91466 -10.42334 -9.88728 -9.51531 -8.96654 -8.32420 -6.01244 -0.00522 0.42400 1.34045 1.42048 1.48711 1.57055 1.70199 1.84358 1.88249 2.21832 2.35096 2.72961 3.00736 3.14833 3.57018 3.67815 3.94885 4.04167 4.15597 4.25857 4.33362 4.35824 4.38432 4.39065 4.44593 4.52974 4.61696 4.67617 4.71431 4.76730 4.84566 4.91748 4.96933 5.01206 5.22289 5.29644 5.39973 5.44707 5.52947 5.57376 5.64265 5.75651 5.78352 6.23008 6.33991 7.07113 7.21926 7.47408 7.87577 8.68753 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003489 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.418208 B = 8022.669688 C = 8840.836075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.493 3.507 4 O -0.549 6.549 5 C 0.153 3.847 6 N -0.444 5.444 7 C -0.344 4.344 8 H 0.119 0.881 9 C 0.001 3.999 10 N -0.906 5.906 11 Si 0.996 3.004 12 H -0.257 1.257 13 H -0.289 1.289 14 H -0.273 1.273 15 C 0.464 3.536 16 O -0.625 6.625 17 C -0.040 4.040 18 C -0.165 4.165 19 C 0.001 3.999 20 O -0.203 6.203 21 C 0.027 3.973 22 C -0.120 4.120 23 C -0.064 4.064 24 C -0.106 4.106 25 C -0.135 4.135 26 C -0.082 4.082 27 C -0.142 4.142 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.076 0.924 33 H 0.272 0.728 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.228 0.772 37 H 0.151 0.849 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.156 0.844 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.607 5.058 8.681 12.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.337 3.663 4 O -0.438 6.438 5 C 0.027 3.973 6 N -0.163 5.163 7 C -0.470 4.470 8 H 0.136 0.864 9 C -0.200 4.200 10 N -0.546 5.546 11 Si 0.820 3.180 12 H -0.181 1.181 13 H -0.214 1.214 14 H -0.198 1.198 15 C 0.255 3.745 16 O -0.512 6.512 17 C -0.079 4.079 18 C -0.166 4.166 19 C -0.064 4.064 20 O -0.105 6.105 21 C -0.020 4.020 22 C -0.138 4.138 23 C -0.064 4.064 24 C -0.162 4.162 25 C -0.153 4.153 26 C -0.100 4.100 27 C -0.143 4.143 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.244 0.756 37 H 0.169 0.831 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.173 0.827 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.037 5.078 9.252 12.158 hybrid contribution -0.893 0.024 -1.487 1.735 sum 5.144 5.101 7.764 10.619 Atomic orbital electron populations 1.23283 0.76343 1.04814 1.01111 1.86429 1.23971 1.33909 1.84969 1.24035 0.92596 0.80655 0.69049 1.90454 1.67479 1.37639 1.48202 1.20625 0.86976 0.86074 1.03623 1.43553 1.58334 1.08568 1.05864 1.20053 1.28285 1.13593 0.85079 0.86388 1.26129 0.93784 0.97050 1.03003 1.69698 1.36867 1.19012 1.29071 0.84924 0.78983 0.77848 0.76215 1.18109 1.21428 1.19806 1.20815 0.80891 0.90116 0.82656 1.90528 1.58562 1.69531 1.32601 1.19668 1.04678 0.91614 0.91959 1.20840 0.93855 1.04861 0.97078 1.24100 1.00102 1.00722 0.81442 1.83934 1.25569 1.69081 1.31879 1.20053 0.83658 1.01184 0.97086 1.20098 0.91981 1.05206 0.96516 1.20083 0.93361 0.96108 0.96828 1.20843 0.97648 1.03886 0.93840 1.21002 1.00877 1.01229 0.92186 1.20491 0.91309 0.98011 1.00171 1.20037 0.95991 1.03932 0.94316 0.93159 0.93619 0.84893 0.84804 0.90638 0.91791 0.87693 0.87680 0.75614 0.83128 0.89330 0.90316 0.89890 0.82679 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.51 16 2 O -0.38 -16.53 10.56 -51.32 -0.54 -17.08 16 3 C 0.49 25.05 5.92 71.24 0.42 25.47 16 4 O -0.55 -30.78 15.94 21.96 0.35 -30.43 16 5 C 0.15 7.60 5.29 85.63 0.45 8.05 16 6 N -0.44 -22.36 2.11 -639.60 -1.35 -23.71 16 7 C -0.34 -16.65 9.00 84.04 0.76 -15.90 16 8 H 0.12 5.17 6.72 -2.91 -0.02 5.15 16 9 C 0.00 0.04 5.41 84.93 0.46 0.50 16 10 N -0.91 -45.98 8.21 21.66 0.18 -45.80 16 11 Si 1.00 38.75 29.56 68.60 2.03 40.78 16 12 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 13 H -0.29 -11.38 7.11 99.48 0.71 -10.67 16 14 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 15 C 0.46 22.79 7.61 87.66 0.67 23.46 16 16 O -0.62 -34.15 15.60 -3.08 -0.05 -34.20 16 17 C -0.04 -1.59 4.80 29.10 0.14 -1.45 16 18 C -0.16 -6.36 4.85 -18.59 -0.09 -6.45 16 19 C 0.00 0.02 11.89 66.85 0.79 0.81 16 20 O -0.20 -7.15 10.58 -8.90 -0.09 -7.24 16 21 C 0.03 0.93 7.42 22.99 0.17 1.10 16 22 C -0.12 -3.22 9.70 22.35 0.22 -3.00 16 23 C -0.06 -1.46 5.88 -19.84 -0.12 -1.57 16 24 C -0.11 -1.44 9.99 71.23 0.71 -0.73 16 25 C -0.14 -3.40 9.62 22.04 0.21 -3.18 16 26 C -0.08 -2.64 10.05 22.20 0.22 -2.42 16 27 C -0.14 -5.26 6.38 -20.21 -0.13 -5.39 16 28 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 29 H 0.04 1.64 8.13 -2.38 -0.02 1.62 16 30 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 31 H 0.13 6.69 6.28 -2.39 -0.01 6.68 16 32 H 0.08 3.67 7.36 -2.39 -0.02 3.66 16 33 H 0.27 13.34 8.32 -92.70 -0.77 12.57 16 34 H 0.10 4.00 8.03 -2.39 -0.02 3.98 16 35 H 0.11 3.80 7.74 -2.38 -0.02 3.78 16 36 H 0.23 6.44 8.06 -2.92 -0.02 6.42 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 0.92 8.08 -2.38 -0.02 0.90 16 40 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 41 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.12 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -71.34 363.66 7.66 -63.68 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 1.05 Total: 32.19 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 6.09 Total: 21.81 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -1.17 Total: -69.51 kcal Atomic # 8 Polarization: -88.61 SS G_CDS: -0.33 Total: -88.95 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -71.34 7.66 -63.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120668281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.732 kcal (2) G-P(sol) polarization free energy of solvation -71.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds